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Author: Andreas Tille <tille@debian.org>
Last-Update: 2015-12-07
Description: Check command line arguments before processing
--- a/database_clustering/get_all_vfdb.sh
+++ b/database_clustering/get_all_vfdb.sh
@@ -5,6 +5,11 @@
#example usage:
#/srst2/database_clustering/get_all_vfdb.sh ./CP_VFs.ffn ./VFDB
+if [ $# != 2 ] ; then
+ echo "Usage: `basename $0` <vfdbfile> <outputfolder>"
+ exit 1
+fi
+
VFDBFILE=$(readlink -e $1)
OUTPUTFOLDER=$2
#get the srst2/database_clustering folder where all the other python scripts live side-by-side with this one
--- a/database_clustering/get_genus_vfdb.sh
+++ b/database_clustering/get_genus_vfdb.sh
@@ -4,6 +4,11 @@
#example usage:
#/srst2/database_clustering/get_genus_vfdb.sh ./CP_VFs.ffn Bacillus ./VFDB
+if [ $# != 3 ] ; then
+ echo "Usage: `basename $0` <vfdbfile> <genus> <outputfolder>"
+ exit 1
+fi
+
VFDBFILE=$(readlink -e $1)
GENUS=$2
OUTPUTFOLDER=$3
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