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#!/usr/bin/make -f
# DH_VERBOSE := 1
include /usr/share/dpkg/default.mk
%:
dh $@ --buildsystem=pybuild
execute_after_dh_auto_build:
markdown README.md > README.html
markdown database_clustering/README.md > database_clustering_README.html
execute_after_dh_install:
mv debian/$(DEB_SOURCE)/usr/lib/*/dist-packages/$(DEB_SOURCE)/* debian/$(DEB_SOURCE)/usr/share/$(DEB_SOURCE)
rm -rf debian/*/usr/bin/*.py debian/$(DEB_SOURCE)/usr/lib/*/dist-packages/
# fix line endings to make sure Python3 interpreter will be found
find debian/*/usr/share -name "VFDB*" -exec dos2unix \{\} \;
sed -i '1s:^#!/usr/local.*python[.0-9]*$$:#!/usr/bin/python3:' debian/$(DEB_SOURCE)/usr/share/$(DEB_SOURCE)/qsub_srst2.py
find debian -name __pycache__ -type d | xargs rm -rf
execute_after_dh_fixperms:
chmod +x debian/$(DEB_SOURCE)/usr/share/srst2/database_clustering/get_genus_vfdb.sh
chmod +x debian/$(DEB_SOURCE)/usr/share/srst2/database_clustering/get_all_vfdb.sh
chmod -x debian/$(DEB_SOURCE)/usr/share/srst2/database_clustering/align_plot_tree_min3.py
for py in `find debian -name "*.py"` ; do \
if head -n 1 $$py | grep -q '^#! */usr/bin/.*python' ; then chmod +x $$py ; fi ; \
done
override_dh_auto_test:
ifeq (,$(filter nocheck,$(DEB_BUILD_OPTIONS)))
cd tests && python3 test_slurm_srst2.py && python3 test_srst2.py
endif
execute_after_dh_installdocs:
sed -i "s?sys.path.append(os.path.abspath(os.path.join(os.path.dirname(__file__).*scripts.*?sys.path.append(os.path.abspath('/usr/share/$(DEB_SOURCE)'))?" debian/$(DEB_SOURCE)/usr/share/doc/$(DEB_SOURCE)/tests/*.py
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