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Source: srst2
Maintainer: Debian Med Packaging Team <debian-med-packaging@lists.alioth.debian.org>
Uploaders: Andreas Tille <tille@debian.org>
Section: science
Priority: optional
Build-Depends: debhelper (>= 9),
dh-python,
python-all,
python-setuptools,
python-markdown,
dos2unix,
python-mock,
python-scipy,
bowtie2,
samtools
Standards-Version: 3.9.8
Vcs-Browser: https://anonscm.debian.org/viewvc/debian-med/trunk/packages/srst2/trunk/
Vcs-Svn: svn://anonscm.debian.org/debian-med/trunk/packages/srst2/trunk/
Homepage: https://katholt.github.io/srst2/
Package: srst2
Architecture: any
Depends: ${python:Depends},
${misc:Depends},
bowtie2,
cd-hit,
samtools,
python-scipy,
python-biopython
Recommends: python-rpy2
Description: Short Read Sequence Typing for Bacterial Pathogens
This program is designed to take Illumina sequence data, a MLST database
and/or a database of gene sequences (e.g. resistance genes, virulence
genes, etc) and report the presence of STs and/or reference genes.
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