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#!/usr/bin/python3
from distutils.core import setup
setup(
name='srst2',
version='0.2.0',
author='Kathryn Holt',
author_email='drkatholt@gmail.com',
packages=['srst2'],
scripts=['scripts/getmlst.py', 'scripts/slurm_srst2.py'],
entry_points={
'console_scripts': ['srst2 = srst2.srst2:main']
},
package_dir = {'srst2': 'scripts'},
package_data={'srst2': ['data/resistance.*']},
url='http://katholt.github.io/srst2/',
license='LICENSE.txt',
description='Short Read Sequence Typing for Bacterial Pathogens',
long_description=('This program is designed to take Illumina'
'sequence data, a MLST database and/or a database'
'of gene sequences (e.g. resistance genes, virulence'
'genes, etc) and report the presence of STs and/or'
'reference genes.'),
install_requires=[
# Although we depend on scipy, which depends on numpy, we don't
# specify the dependencies here because they don't play well with
# any Python installing system, such as pip or easy_install.
# So we assume the user has already installed the dependencies
# themselves.
#"numpy >= 1.7.1",
#"scipy >= 0.12.0",
],
)
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