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Source: ssake
Maintainer: Debian Med Packaging Team <debian-med-packaging@lists.alioth.debian.org>
Uploaders: Andreas Tille <tille@debian.org>,
Charles Plessy <plessy@debian.org>
Section: science
Testsuite: autopkgtest
Priority: optional
Build-Depends: debhelper (>= 9)
Standards-Version: 3.9.6
Vcs-Browser: https://anonscm.debian.org/viewvc/debian-med/trunk/packages/ssake/trunk/
Vcs-Svn: svn://anonscm.debian.org/debian-med/trunk/packages/ssake/trunk/
Homepage: http://www.bcgsc.ca/platform/bioinfo/software/ssake
Package: ssake
Architecture: all
Depends: ${misc:Depends},
${perl:Depends},
python,
libperl4-corelibs-perl | perl (<< 5.12.3-7)
Suggests: ssake-examples
Description: genomics application for assembling millions of very short DNA sequences
The Short Sequence Assembly by K-mer search and 3′ read Extension
(SSAKE) is a genomics application for aggressively assembling
millions of short nucleotide sequences by progressively searching for
perfect 3′-most k-mers using a DNA prefix tree. SSAKE is designed to
help leverage the information from short sequences reads by
stringently clustering them into contigs that can be used to
characterize novel sequencing targets.
Package: ssake-examples
Architecture: all
Depends: ${misc:Depends}
Suggests: ssake
Description: example data for SSAKE, a genomic assembler of short reads
This package contains test sequences for SSAKE, a genomics application for
assembling millions of very short DNA sequences.
.
Instructions about how to use the test data can be found in
/usr/share/doc/ssake/SSAKE.readme.gz after the package `ssake' is installed.
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