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#!/usr/bin/make -f
# debian/rules file for ssake
# (C) Andreas Tille
# GPL
include /usr/share/dpkg/pkg-info.mk
examples=$(DEB_SOURCE)-examples
%:
dh $@
BINDIR := $(CURDIR)/debian/$(DEB_SOURCE)/usr/bin
DOCDIR := $(CURDIR)/debian/$(examples)/usr/share/doc/$(DEB_SOURCE)
override_dh_install:
dh_install
cp -a ssake/SSAKE $(BINDIR)/ssake
# Fix totally broken interpreter definitions
for pl in `grep -Rl '#!/home/.\+/perl' debian/*/usr/*` ; do \
sed -i '1s?^#!/home/.\+/perl?#!/usr/bin/perl?' $${pl} ; \
done
for sh in `grep -Rl '#!/usr/bin/bash' debian/*/usr/*` ; do \
sed -i '1s?^#!/usr/bin/bash?#!/bin/bash?' $${sh} ; \
done
override_dh_installexamples:
dh_installexamples
find $(DOCDIR)/examples -name "*.sh" -type f -exec sed -i '1 i #!/bin/sh' \{\} \;
override_dh_installdocs:
dh_installdocs
markdown ssake/readme.md > $(CURDIR)/debian/$(DEB_SOURCE)/usr/share/doc/$(DEB_SOURCE)/README.html
override_dh_auto_test:
ifeq (,$(filter nocheck,$(DEB_BUILD_OPTIONS)))
TESTDIR=$$(mktemp -d) ; \
cp -a ssake/test/* $${TESTDIR} ; \
cd $${TESTDIR} && $(CURDIR)/ssake/SSAKE -f Herpesvirus_3.60kb.reads.fa -m 16 -o 2 -r 0.6 -p 0 -t 0 -c 1 -w 5 -b myFirstSSAKErun
rm -rf $${TESTDIR}
endif
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