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Source: stacks
Maintainer: Debian Med Packaging Team <debian-med-packaging@lists.alioth.debian.org>
Uploaders: Tim Booth <tbooth@ceh.ac.uk>,
Andreas Tille <tille@debian.org>
Section: science
Priority: optional
Build-Depends: debhelper (>= 11~),
python,
zlib1g-dev,
libbam-dev,
libsparsehash-dev (>= 2.0),
samtools,
libhts-dev
Standards-Version: 4.2.1
Vcs-Browser: https://salsa.debian.org/med-team/stacks
Vcs-Git: https://salsa.debian.org/med-team/stacks.git
Homepage: http://creskolab.uoregon.edu/stacks/
Package: stacks
Architecture: any
Depends: ${shlibs:Depends},
${misc:Depends},
${python:Depends},
samtools,
libdbi-perl
Recommends: libspreadsheet-writeexcel-perl
Description: pipeline for building loci from short-read DNA sequences
Stacks is a software pipeline for building loci from short-read sequences,
such as those generated on the Illumina platform. Stacks was developed to work
with restriction enzyme-based data, such as RAD-seq, for the purpose of
building genetic maps and conducting population genomics and phylogeography.
.
Note that this package installs Stacks such that all commands must be run as:
$ stacks <cmdname> <args>
Package: stacks-web
Architecture: all
Depends: ${shlibs:Depends},
${misc:Depends},
apache2 | httpd,
default-mysql-server | virtual-mysql-server,
libapache2-mod-php | php-cgi,
libdbd-mysql-perl,
php-mdb2-driver-mysql
Recommends: stacks
Description: web interface for displaying loci from short-read sequences
Stacks is a software pipeline for building loci from short-read sequences,
such as those generated on the Illumina platform. Stacks was developed to work
with restriction enzyme-based data, such as RAD-seq, for the purpose of
building genetic maps and conducting population genomics and phylogeography.
.
This package provides the web-based viewer which you can use to examine Stacks
output that has been loaded into a MySQL database.
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