1
2
3
4
5
6
7
8
9
10
11
12
13
14
15
16
17
18
19
20
21
22
23
24
25
26
27
28
29
30
31
32
33
34
35
36
37
38
|
Source: stacks
Maintainer: Debian Med Packaging Team <debian-med-packaging@lists.alioth.debian.org>
Uploaders: Tim Booth <tbooth@ceh.ac.uk>,
Andreas Tille <tille@debian.org>
Section: science
Priority: optional
Build-Depends: debhelper-compat (= 13),
zlib1g-dev,
libbam-dev,
libsparsehash-dev,
samtools,
libhts-dev
Standards-Version: 4.5.1
Vcs-Browser: https://salsa.debian.org/med-team/stacks
Vcs-Git: https://salsa.debian.org/med-team/stacks.git
Homepage: https://creskolab.uoregon.edu/stacks/
Rules-Requires-Root: no
Package: stacks
Architecture: any
Depends: ${shlibs:Depends},
${misc:Depends},
samtools,
libdbi-perl
Recommends: libspreadsheet-writeexcel-perl,
python3,
littler
Conflicts: stacks-web
Provides: stacks-web
Replaces: stacks-web
Description: pipeline for building loci from short-read DNA sequences
Stacks is a software pipeline for building loci from short-read sequences,
such as those generated on the Illumina platform. Stacks was developed to work
with restriction enzyme-based data, such as RAD-seq, for the purpose of
building genetic maps and conducting population genomics and phylogeography.
.
Note that this package installs Stacks such that all commands must be run as:
$ stacks <cmdname> <args>
|
