File: stdio_hack.h

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/*
 * Copyright (c) 2005, 2007 Genome Research Ltd.
 * Author(s): James Bonfield
 * 
 * Redistribution and use in source and binary forms, with or without 
 * modification, are permitted provided that the following conditions are met:
 * 
 *    1. Redistributions of source code must retain the above copyright notice,
 *       this list of conditions and the following disclaimer.
 * 
 *    2. Redistributions in binary form must reproduce the above
 *       copyright notice, this list of conditions and the following
 *       disclaimer in the documentation and/or other materials provided
 *       with the distribution.
 * 
 *    3. Neither the names Genome Research Ltd and Wellcome Trust Sanger
 *    Institute nor the names of its contributors may be used to endorse
 *    or promote products derived from this software without specific
 *    prior written permission.
 * 
 * THIS SOFTWARE IS PROVIDED BY GENOME RESEARCH LTD AND CONTRIBUTORS "AS
 * IS" AND ANY EXPRESS OR IMPLIED WARRANTIES, INCLUDING, BUT NOT LIMITED
 * TO, THE IMPLIED WARRANTIES OF MERCHANTABILITY AND FITNESS FOR A
 * PARTICULAR PURPOSE ARE DISCLAIMED. IN NO EVENT SHALL GENOME RESEARCH
 * LTD OR CONTRIBUTORS BE LIABLE FOR ANY DIRECT, INDIRECT, INCIDENTAL,
 * SPECIAL, EXEMPLARY, OR CONSEQUENTIAL DAMAGES (INCLUDING, BUT NOT
 * LIMITED TO, PROCUREMENT OF SUBSTITUTE GOODS OR SERVICES; LOSS OF USE,
 * DATA, OR PROFITS; OR BUSINESS INTERRUPTION) HOWEVER CAUSED AND ON ANY
 * THEORY OF LIABILITY, WHETHER IN CONTRACT, STRICT LIABILITY, OR TORT
 * (INCLUDING NEGLIGENCE OR OTHERWISE) ARISING IN ANY WAY OUT OF THE USE
 * OF THIS SOFTWARE, EVEN IF ADVISED OF THE POSSIBILITY OF SUCH DAMAGE.
 */

#ifndef _STDIO_HACK_H_
#define _STDIO_HACK_H_

#include <stdio.h>
#include "io_lib/mFILE.h"

#ifdef __cplusplus
extern "C" {
#endif

/*
 * This file will define many of the stdio functions to use the
 * in-memory versions here. These are sufficient to allow the abi,
 * scf, etc reading code (but not writing) to transparently operate by
 * loading the entire file into memory and then doing in-memory
 * manipulation instead of on-disk manipulation.
 *
 * The key use for this though is to allow generation of fake FILE pointers
 * so that reading from tar files does not requiring writing to disk and
 * reading back again.
 */

#define FILE mFILE
#define fopen mfopen
#define fclose mfclose
#define fseek mfseek
#define ftell mftell
#define rewind mrewind
#ifdef feof
#    undef feof
#endif
#define feof mfeof
#define fread mfread
#define fwrite mfwrite
#define fgetc mfgetc
#define ungetc mungetc
#define fgets mfgets
#define fflush mfflush
#define fprintf mfprintf

#ifdef stdin
#    undef stdin
#    undef stdout
#    undef stderr
#endif
#define stdin mstdin()
#define stdout mstdout()
#define stderr mstderr()

#define fread_abi  mfread_abi
#define fwrite_abi mfwrite_abi
#define fread_alf  mfread_alf
#define fwrite_alf mfwrite_alf
#define fread_pln  mfread_pln
#define fwrite_pln mfwrite_pln
#define fread_scf  mfread_scf
#define fwrite_scf mfwrite_scf
#define fread_ztr  mfread_ztr
#define fwrite_ztr mfwrite_ztr

#define exp_fread_info exp_mfread_info
#define exp_print_file exp_print_mfile

#define open_trace_file open_trace_mfile
#define fread_reading mfread_reading
#define fwrite_reading mfwrite_reading

#ifdef __cplusplus
}
#endif

#endif /* _STDIO_HACK_H_ */