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/*
* Copyright (c) Medical Research Council 2001. All rights reserved.
*
* Permission to use, copy, modify and distribute this software and its
* documentation for any purpose is hereby granted without fee, provided that
* this copyright and notice appears in all copies.
*
* This file was written as part of the Staden Package at the MRC Laboratory
* of Molecular Biology, Hills Road, Cambridge, CB2 2QH, United Kingdom.
*
* MRC disclaims all warranties with regard to this software.
*
*/
#include <cassert>
#include <cstring> // For std::memset()
#include <mutlib.h>
#include <trace.hpp>
#include <tracealign_cache.hpp>
void TraceAlignDestroyResults( tracealign_t* ta )
{
assert(ta != NULL);
// Reset result code/string
ta->ResultCode = MUTLIB_RESULT_SUCCESS;
ta->ResultString[0] = 0;
// Delete alignments, trace object destructor disposes of the Read* pointers
if( ta->Alignment[MUTLIB_INPUT].Trace )
{
Trace t1;
t1.Wrap( ta->Alignment[MUTLIB_INPUT].Trace, true );
std::memset( &ta->Alignment[MUTLIB_INPUT], 0, sizeof(mutlib_trace_t) );
}
if( ta->Alignment[MUTLIB_INPUT_REFERENCE].Trace )
{
Trace t2;
t2.Wrap( ta->Alignment[MUTLIB_INPUT_REFERENCE].Trace, true );
std::memset( &ta->Alignment[MUTLIB_INPUT_REFERENCE], 0, sizeof(mutlib_trace_t) );
}
}
void TraceAlignDestroyCache( tracealign_t* ta )
{
assert(ta != NULL);
// Delete reference cache data
TraceAlignCache* pCache = static_cast<TraceAlignCache*>( ta->Cache );
if( pCache )
delete pCache;
ta->Cache = 0;
}
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