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/*
* Copyright (c) Medical Research Council 2001. All rights reserved.
*
* Permission to use, copy, modify and distribute this software and its
* documentation for any purpose is hereby granted without fee, provided that
* this copyright and notice appears in all copies.
*
* This file was written as part of the Staden Package at the MRC Laboratory
* of Molecular Biology, Hills Road, Cambridge, CB2 2QH, United Kingdom.
*
* MRC disclaims all warranties with regard to this software.
*
*/
#ifndef _MUTLIB_TAGARRAY_HPP_
#define _MUTLIB_TAGARRAY_HPP_
#include <mutlib.h>
#include <list.hpp>
#include <muttag.hpp>
class TagArray
{
public:
// Constructor/Destructor
TagArray() { Init(); }
~TagArray() { Empty(); }
public:
// Services
mutlib_tag_t* Raw() { return m_pArray; }
void Empty();
int Length() const { return m_nLength; }
void AutoDestroy( bool s ) { m_bAutoDestroy=s; }
void Create( int nLength );
void ReadTags( List<MutTag>& rList, int nPositionIndex, bool bComplement );
void Wrap( mutlib_tag_t* a, int nLength );
public:
// Operators
mutlib_tag_t& operator[]( int n ) { assert(n<m_nLength); return m_pArray[n]; }
private:
// Services
void Init();
private:
// Data
mutlib_tag_t* m_pArray;
int m_nLength;
bool m_bAutoDestroy;
};
#endif
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