1
2
3
4
5
6
7
8
9
10
11
12
13
14
15
16
17
18
19
20
21
22
23
24
25
26
27
28
29
30
31
32
33
34
35
36
37
38
39
40
41
42
43
44
45
46
47
48
49
50
51
|
/*
* Copyright (c) Medical Research Council 2001. All rights reserved.
*
* Permission to use, copy, modify and distribute this software and its
* documentation for any purpose is hereby granted without fee, provided that
* this copyright and notice appears in all copies.
*
* This file was written as part of the Staden Package at the MRC Laboratory
* of Molecular Biology, Hills Road, Cambridge, CB2 2QH, United Kingdom.
*
* MRC disclaims all warranties with regard to this software.
*
*/
#ifndef _TRACEALIGN_CACHE_HPP_
#define _TRACEALIGN_CACHE_HPP_
#include <matrix.hpp>
#include <tracealign_preprocess.hpp>
class TraceAlignCache
{
public:
// Constructor/Destructor
TraceAlignCache() { }
~TraceAlignCache() { }
public:
// Services
void Flush();
void CreateAlignmentMatrix( int nMatrixSize, int nLevels, int nOffset );
public:
// Cached data
TraceAlignPreprocessor RefData[2];
SimpleMatrix<int> AlignmentMatrix;
};
#endif
|
