1 2 3 4 5 6 7 8 9 10 11 12 13 14 15 16 17 18 19 20 21 22 23 24 25 26 27 28 29 30 31 32 33 34 35 36 37 38 39 40 41 42 43 44 45 46 47 48 49 50 51 52 53 54 55 56 57 58 59 60 61 62 63 64 65 66 67 68 69 70 71 72 73 74 75 76 77 78 79 80 81 82 83 84 85 86 87 88 89 90 91 92 93 94 95 96 97 98 99 100 101 102 103 104 105 106 107 108 109 110 111 112 113 114 115 116 117 118 119 120 121 122 123 124 125 126 127 128 129 130 131 132 133 134 135 136 137 138 139 140 141 142 143 144 145 146 147 148 149 150 151 152 153 154 155 156 157 158 159 160 161 162 163 164 165 166 167 168 169 170 171 172 173 174 175 176 177 178 179 180 181 182 183 184 185 186 187 188 189 190 191 192 193 194 195 196 197 198 199 200 201 202 203 204 205 206 207 208 209 210 211 212 213 214 215 216 217 218 219 220 221 222 223 224 225 226 227 228 229 230 231 232 233 234 235 236 237 238 239 240 241 242 243 244 245 246 247 248 249 250 251 252 253 254 255 256 257 258 259 260 261 262 263 264 265 266 267 268 269 270 271 272 273 274 275 276 277 278 279 280 281 282 283 284 285 286 287 288 289 290 291 292 293 294 295 296 297 298 299 300 301 302 303 304 305 306 307 308 309 310 311 312 313 314 315 316 317 318 319 320 321 322 323 324 325 326 327 328 329 330 331 332 333 334 335 336 337
|
#global auto_path
#lappend auto_path $env(STADLIB)/../../tk_utils
set_def OUTPUT_SCROLL 1
# 17/03/99 johnt - use windows as default help viewer under windows
if {"$tcl_platform(platform)" == "windows"} {
set_def HELP_PROGRAM windows
} elseif {$tcl_platform(os) == "Darwin"} {
set_def HELP_PROGRAM macosx
} else {
set_def HELP_PROGRAM auto
}
set_def PRINT_COMMAND {lpr}
#Fonts
if {"$tcl_platform(platform)" == "windows"} {
set_def FONT.TEXT {-family Courier -size 8 -weight normal -slant roman -underline 0 -overstrike 0}
set_def FONT.LISTBOX {-family {MS Sans Serif} -size 8 -weight normal -slant roman -underline 0 -overstrike 0}
set_def FONT.ENZYME {-family {MS Sans Serif} -size 8 -weight normal -slant roman -underline 0 -overstrike 0}
set_def FONT.BUTTON {-family {MS Sans Serif} -size 8 -weight normal -slant roman -underline 0 -overstrike 0}
set_def FONT.MENU {-family {MS Sans Serif} -size 8 -weight normal -slant roman -underline 0 -overstrike 0}
set_def FONT.MENU_TITLE {-family {MS Sans Serif} -size 8 -weight normal -slant roman -underline 0 -overstrike 0}
set_def FONT.TITLE {-family Courier -size 12 -weight bold -slant roman -underline 0 -overstrike 0}
set_def FONT.SHEET {-family Courier -size 10 -weight normal -slant roman -underline 0 -overstrike 0}
set_def FONT.TRACE {-family Helvetica -size 8 -weight normal -slant roman -underline 0 -overstrike 0}
set_def FONT.TRACE_CONF {-family Fixed -size 7}
} elseif {$tcl_platform(os) == "Darwin"} {
set_def FONT.MENU {-family Helvetica -size -12}
set_def FONT.MENU_TITLE {-family Helvetica -slant italic -size -12}
set_def FONT.TEXT {-family Courier -size -12}
set_def FONT.BUTTON {-family Helvetica -size -12}
set_def FONT.LISTBOX {-family Helvetica -size -12}
set_def FONT.TITLE {-family Helvetica -size -16}
set_def FONT.SHEET {-family Fixed -size -15 -weight normal}
set_def FONT.TRACE {-family Helvetica -size -12}
set_def FONT.ENZYME {-family Helvetica -size -11}
set_def FONT.TRACE_CONF {-family Helvetica -size -9}
} else {
set_def FONT.MENU {-family Helvetica -weight bold -size -12}
set_def FONT.MENU_TITLE {-family Helvetica -weight bold -slant italic -size -12}
set_def FONT.TEXT {-family Courier -size -12}
set_def FONT.BUTTON {-family Helvetica -weight bold -size -12}
set_def FONT.LISTBOX {-family Helvetica -weight bold -size -12}
set_def FONT.TITLE {-family Helvetica -size -16 -weight bold}
set_def FONT.SHEET {-family Fixed -size -15 -weight normal}
set_def FONT.TRACE {-family Helvetica -size -12}
set_def FONT.ENZYME {-family Helvetica -size -11}
set_def FONT.TRACE_CONF {-family Helvetica -size -9}
}
#Colours. Blank implies tk defaults
set_def FOREGROUND {}
set_def BACKGROUND {}
#Window placement style. 1 => automatic, 0 => default WM mechanism.
set_def PLACE_WINDOWS 1
#text output display
set_def TEXT_REDIR.WIN .text_redir
set_def TEXT_OUTPUT.WIN .text_output
set_def TEXT_OUTPUT.LISTNAME "list name"
set_def TEXT_OUTPUT.FILENAME "file name"
set_def TEXT_REDIR.FILENAME "file name"
set_def TEXT_OUTPUT.OUTPUT.1.NAME "Output header"
set_def TEXT_OUTPUT.OUTPUT.1.VALUE 0
set_def TEXT_OUTPUT.OUTPUT.2.NAME "Output parameters"
set_def TEXT_OUTPUT.OUTPUT.2.VALUE 0
set_def TEXT_OUTPUT.OUTPUT.3.NAME "Output text"
set_def TEXT_OUTPUT.OUTPUT.3.VALUE 1
set_def ERROR_BELL 1
# Restriction enzyme selection box
set_def R_ENZ.WIN ".list_of_restriction_enzymes"
set_def R_ENZ.INFILE.NAME "File name"
set_def R_ENZ.SELFILE.NAME "Select input source"
set_def R_ENZ.SELFILE.VALUE 2
set_def R_ENZ.SELFILE.BUTTON.1 "All enzyme file "
set_def R_ENZ.SELFILE.BUTTON.2 "6 cutter file"
set_def R_ENZ.SELFILE.BUTTON.3 "4 cutter file"
set_def R_ENZ.SELFILE.BUTTON.4 "Personal"
set_def R_ENZ.E_NAME.NAME "Name of enzyme"
set_def R_ENZ.E_NAME.SEQ "Sequence of enzyme"
set_def R_ENZ.E_FILE.1 "\$STADTABL/RENZYM.ALL"
set_def R_ENZ.E_FILE.2 "\$STADTABL/RENZYM.6"
set_def R_ENZ.E_FILE.3 "\$STADTABL/RENZYM.4"
set_def R_ENZ.E_FILE.4 ""
# Restriction enzyme selection box
set_def R_ENZ.RANGE.NAME "plot range"
set_def R_ENZ.WIN .restriction_enzymes
set_def R_ENZ.PLOT_WIDTH 700
set_def R_ENZ.PLOT_HEIGHT 500
set_def R_ENZ.NAME_WIDTH 70
set_def R_ENZ.TICK_HEIGHT 12
set_def R_ENZ.TICK_WIDTH 0
set_def R_ENZ.TICK_COLOUR "black"
set_def R_ENZ.RULER.WIN .ruler
set_def R_ENZ.RULER.COLOUR "black"
set_def R_ENZ.RULER.LINE_WIDTH 2
set_def R_ENZ.RULER.PLOT_HEIGHT 50
set_def R_ENZ.RULER.OFFSET 15
set_def R_ENZ.RULER.TEXT_OFFSET 17
set_def R_ENZ.RULER.TICK_HEIGHT 10
set_def R_ENZ.RULER.TICK_WIDTH 0
set_def R_ENZ.RULER.TICK_COLOUR "black"
set_def R_ENZ.RULER.NUM_TICKS 4
set_def R_ENZ.BORDERWIDTH 2
set_def R_ENZ.CURSOR .cursor_t
set_def R_ENZ.CURSOR_COLOUR "black"
set_def R_ENZ.CURSOR_WIDTH 0
set_def R_ENZ.NAMES.PLOT_WIDTH 100
set_def R_ENZ.PLOT_HEIGHT 500
set_def R_ENZ.CUTS_COLOUR "black"
set_def R_ENZ.SELECT_COLOUR "pink2"
set_def R_ENZ.TEXT_COLOUR "black"
set_def R_ENZ.EDITOR.CROSSHAIR_COLOUR "black"
#-----------------------------------------------------------------------------
# Container and element
#-----------------------------------------------------------------------------
set_menu canvas_menu
add_menu File 1 0 left
add_menu View 1 0 left
add_menu Results 1 0 left
add_menu Help 1 0 right
add_command {File.Close} 1 0 {container_start_shutdown $c_win $c_id}
add_command {View.Results manager} 1 0 {container_results_manager {show_help spin {SPIN-Result-Manager}} $c_win}
set_def ELEMENT.SELECT_COLOUR white
#strand
set TOP_S 1
set BOTTOM_S 2
#orienation (of sequence, eg in dot plot)
set HORIZONTAL 1
set VERTICAL 2
set BOTH 3
set CIRCLE 4
set DNA 1
set PROTEIN 2
#types of element
set CANVAS 0
set RASTER 1
set SEQ_EDITOR 2
set RULER_AMP 3
set RULER_LEN 4
#position of element movement highlight
set TOP 1
set MIDDLE 2
set BOTTOM 3
set LEFT 4
set RIGHT 5
set_def CONTAINER.MAX_ROW 999
set_def CONTAINER.MAX_COL 999
set_def CONTAINER.RULER_ROW 500
set_def CONTAINER.RULER_COL 500
set_def CONTAINER.SEQ_EDITOR_ROW 999
set_def CONTAINER.WIN .container_win
set_def CONTAINER.RESULTS.WIN .container_results_win
set_def CONTAINER.BUTTONS.WIN .buttons
set_def CONTAINER.HSCROLL.WIN .sb_h
set_def CONTAINER.VSCROLL.WIN .sb_v
set_def CONTAINER.BRIEF.WIN .brief
set_def CONTAINER.KEYBOX.WIN .key
set_def CONTAINER.MENUBAR .menubar
set_def CONTAINER.POS1.NAME .pos1
set_def CONTAINER.POS2.NAME .pos2
set_def CONTAINER.POS1.WIDTH 8
set_def CONTAINER.POS2.WIDTH 8
set_def RULER_H.WIN .ruler_h
set_def RULER_V.WIN .ruler_v
set_def RULER.PLOT_HEIGHT 40
set_def RULER.PLOT_WIDTH 100
set_def CONTAINER.RULER.COLOUR "black"
set_def CONTAINER.RULER.LINE_WIDTH 2
set_def CONTAINER.RULER.PLOT_HEIGHT 50
set_def CONTAINER.RULER.OFFSET 15
set_def CONTAINER.RULER.TEXT_OFFSET 17
set_def CONTAINER.RULER.TICK_HEIGHT 10
set_def CONTAINER.RULER.TICK_WIDTH 0
set_def CONTAINER.RULER.TICK_COLOUR "black"
set_def CONTAINER.RULER.NUM_TICKS 4
set_def CONTAINER.TICK_HEIGHT 12
set_def CONTAINER.TICK_WIDTH 0
set_def CONTAINER.TICK_COLOUR "black"
set_def ELEMENT.WIN .element_win
set_def ELEMENT.PLOT_HEIGHT 200
set_def ELEMENT.PLOT_WIDTH 500
set_def ELEMENT.SINGLE.PLOT_HEIGHT 50
set_def DOT.PLOT_HEIGHT 500
set_def DOT.PLOT_WIDTH 500
set_def CURSOR.LINE_WIDTH 2
set_def CROSSHAIR.COLOUR "black"
set_def CROSSHAIR.LINE_WIDTH 2
#-----------------------------------------------------------------------------
# Window names
#-----------------------------------------------------------------------------
set_def RASTER.WIN .raster
set_def RASTER.R.WIN .r
set_def RASTER.RESULTS.WIN .raster_results
set_def RASTER.SCALEX.WIN .scale_x
set_def RASTER.SCALEY.WIN .scale_y
set_def RASTER.SCALEX.MIN 1
set_def RASTER.SCALEX.MAX 100
set_def RASTER.SCALEY.MIN 1
set_def RASTER.SCALEY.MAX 100
set_def RASTER.SCALEX.MIN_BASES 10
# Trace colours
set_def TRACE.COLOUR_A #00c500
set_def TRACE.COLOUR_C blue
set_def TRACE.COLOUR_G black
set_def TRACE.COLOUR_T orangered
set_def TRACE.COLOUR_CURSOR navy
if { $tcl_platform(platform) == "windows" } {
set_def TRACE.COLOUR_QUALITY SystemButtonShadow
} else {
set_def TRACE.COLOUR_QUALITY grey
}
set_def TRACE.COLOUR_VECTOR #e8c8c0
set_def TRACE.LINE_WIDTH 0
# print options
set_def PS.PAGE_SIZES.A4 {"A4" 842 595}
set_def PS.PAGE_SIZES.A3 {"A3" 1191 842}
set_def PS.PAGE_SIZES.US_Letter {"US Letter" 792 612}
set_def PS.WIN .print_setup
set_def PS.PAGE "A4"
set_def PS.PAGE_HEIGHT 842
set_def PS.PAGE_WIDTH 595
set_def PS.ORIENTATION Portrait
set_def PS.TOP_MARGIN 72
set_def PS.BOTTOM_MARGIN 72
set_def PS.LEFT_MARGIN 72
set_def PS.RIGHT_MARGIN 72
set_def PS.PANEL_HEIGHT 103
set_def PS.PANEL_WIDTH 453
set_def PS.PANEL_SEPARATION 13
set_def PS.N_PANEL 6
set_def PS.FONTS { \
Courier \
Courier-Bold \
Courier-BoldOblique \
Courier-Oblique \
Helvetica \
Helvetica-Bold \
Helvetica-BoldOblique \
Helvetica-Oblique \
Symbol \
Times-Bold \
Times-BoldItalic \
Times-Italic \
Times-Roman \
AvantGarde-Book \
AvantGarde-BookOblique \
AvantGarde-Demi \
AvantGarde-DemiOblique \
Bookman-Demi \
Bookman-DemiItalic \
Bookman-Light \
Bookman-LightItalic \
Helvetica-Narrow \
Helvetica-Narrow-Bold \
Helvetica-Narrow-BoldOblique \
Helvetica-Narrow-Oblique \
NewCenturySchlbk-Bold \
NewCenturySchlbk-BoldItalic \
NewCenturySchlbk-Italic \
NewCenturySchlbk-Roman \
Palatino-Bold \
}
set_def PS.FONT Helvetica
set_def PS.FONT_MIN 5
set_def PS.FONT_MAX 24
set_def PS.FONT_SIZE 12
set_def PS.LW_MIN 0
set_def PS.LW_MAX 10
set_def PS.DASHES {"0" "5 5 0" "10 10 0" "5 5 10 10 0"}
set_defx defs_ps_trace LW [keylget tk_utils_defs TRACE.LINE_WIDTH]
set_defx defs_ps_trace DASH 0
set_def PS.A $defs_ps_trace
set_def PS.A.COLOUR [keylget tk_utils_defs TRACE.COLOUR_A]
set_def PS.C $defs_ps_trace
set_def PS.C.COLOUR [keylget tk_utils_defs TRACE.COLOUR_C]
set_def PS.G $defs_ps_trace
set_def PS.G.COLOUR [keylget tk_utils_defs TRACE.COLOUR_G]
set_def PS.T $defs_ps_trace
set_def PS.T.COLOUR [keylget tk_utils_defs TRACE.COLOUR_T]
set_def PS.N $defs_ps_trace
set_def PS.N.COLOUR black
set_def PS.TRACE_WIN .ps_trace_setup
# Borders for reducing the default maximum window size. (Eg to compensate
# for MS Windows start bars or Unix CDE windows).
if {"$tcl_platform(platform)" == "windows"} {
set_def X_BORDER_SIZE 8
set_def Y_BORDER_SIZE 55
} else {
set_def X_BORDER_SIZE 0
set_def Y_BORDER_SIZE 0
}
set_def FONT_METRICS ""
after idle catch tk_utils_init
|