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|
Author: Andreas Tille <tille@debian.org>
Last-Update: 2014-04-21
Description: Make sure the main scripts will find the staden.profile
file when installed to the location where the wrapper will seek for
the scripts
--- a/gap5/gap5.in
+++ b/gap5/gap5.in
@@ -67,7 +67,10 @@ find_dir() {
echo $dir
}
-STADENROOT=`find_dir $0`/..; export STADENROOT
+STADENROOT=${STADENROOT:-`find_dir $0`/..}; export STADENROOT
+if [ ! -f "$STADENROOT"/share/staden/staden.profile ] ; then
+ STADENROOT=/usr
+fi
STADEN_PREPEND=1; export STADEN_PREPEND
. "$STADENROOT"/share/staden/staden.profile
--- a/gap4/gap4.in
+++ b/gap4/gap4.in
@@ -67,7 +67,10 @@ find_dir() {
echo $dir
}
-STADENROOT=`find_dir $0`/..; export STADENROOT
+STADENROOT=${STADENROOT:-`find_dir $0`/..}; export STADENROOT
+if [ ! -f "$STADENROOT"/share/staden/staden.profile ] ; then
+ STADENROOT=/usr
+fi
STADEN_PREPEND=1; export STADEN_PREPEND
. "$STADENROOT"/share/staden/staden.profile
--- a/pregap4/pregap4.in
+++ b/pregap4/pregap4.in
@@ -67,7 +67,10 @@ find_dir() {
echo $dir
}
-STADENROOT=`find_dir $0`/..; export STADENROOT
+STADENROOT=${STADENROOT:-`find_dir $0`/..}; export STADENROOT
+if [ ! -f "$STADENROOT"/share/staden/staden.profile ] ; then
+ STADENROOT=/usr
+fi
STADEN_PREPEND=1; export STADEN_PREPEND
. "$STADENROOT"/share/staden/staden.profile
--- a/spin/spin.in
+++ b/spin/spin.in
@@ -67,7 +67,10 @@ find_dir() {
echo $dir
}
-STADENROOT=`find_dir $0`/..; export STADENROOT
+STADENROOT=${STADENROOT:-`find_dir $0`/..}; export STADENROOT
+if [ ! -f "$STADENROOT"/share/staden/staden.profile ] ; then
+ STADENROOT=/usr
+fi
STADEN_PREPEND=1; export STADEN_PREPEND
. "$STADENROOT"/share/staden/staden.profile
--- a/trev/trev.in
+++ b/trev/trev.in
@@ -70,7 +70,10 @@ find_dir() {
#
# Run it!
#
-STADENROOT=`find_dir $0`/..; export STADENROOT
+STADENROOT=${STADENROOT:-`find_dir $0`/..}; export STADENROOT
+if [ ! -f "$STADENROOT"/share/staden/staden.profile ] ; then
+ STADENROOT=/usr
+fi
STADEN_PREPEND=1; export STADEN_PREPEND
. "$STADENROOT"/share/staden/staden.profile
--- a/gap5/gap5_cmd.in
+++ b/gap5/gap5_cmd.in
@@ -67,7 +67,10 @@ find_dir() {
echo $dir
}
-STADENROOT=`find_dir $0`/..; export STADENROOT
+STADENROOT=${STADENROOT:-`find_dir $0`/..}; export STADENROOT
+if [ ! -f "$STADENROOT"/share/staden/staden.profile ] ; then
+ STADENROOT=/usr
+fi
STADEN_PREPEND=1; export STADEN_PREPEND
. "$STADENROOT"/share/staden/staden.profile
--- a/gap5/tg_index.in
+++ b/gap5/tg_index.in
@@ -67,7 +67,10 @@ find_dir() {
echo $dir
}
-STADENROOT=`find_dir $0`/..; export STADENROOT
+STADENROOT=${STADENROOT:-`find_dir $0`/..}; export STADENROOT
+if [ ! -f "$STADENROOT"/share/staden/staden.profile ] ; then
+ STADENROOT=/usr
+fi
STADEN_PREPEND=1; export STADEN_PREPEND
. "$STADENROOT"/share/staden/staden.profile
--- a/gap5/tg_view.in
+++ b/gap5/tg_view.in
@@ -67,7 +67,10 @@ find_dir() {
echo $dir
}
-STADENROOT=`find_dir $0`/..; export STADENROOT
+STADENROOT=${STADENROOT:-`find_dir $0`/..}; export STADENROOT
+if [ ! -f "$STADENROOT"/share/staden/staden.profile ] ; then
+ STADENROOT=/usr
+fi
STADEN_PREPEND=1; export STADEN_PREPEND
. "$STADENROOT"/share/staden/staden.profile
--- a/prefinish/finish_sanger
+++ b/prefinish/finish_sanger
@@ -70,7 +70,10 @@ find_dir() {
#
# Run it!
#
-STADENROOT=`find_dir $0`/..; export STADENROOT
+STADENROOT=${STADENROOT:-`find_dir $0`/..}; export STADENROOT
+if [ ! -f "$STADENROOT"/share/staden/staden.profile ] ; then
+ STADENROOT=/usr
+fi
STADLIB=$STADENROOT/lib/staden/; export STADLIB
STADTABL=$STADENROOT/share/staden/etc; export STADTABL
STADTCL=$STADENROOT/share/staden/tcl; export STADTCL
--- a/prefinish/prefinish.in
+++ b/prefinish/prefinish.in
@@ -70,7 +70,10 @@ find_dir() {
#
# Run it!
#
-STADENROOT=`find_dir $0`/..; export STADENROOT
+STADENROOT=${STADENROOT:-`find_dir $0`/..}; export STADENROOT
+if [ ! -f "$STADENROOT"/share/staden/staden.profile ] ; then
+ STADENROOT=/usr
+fi
STADEN_PREPEND=1; export STADEN_PREPEND
. "$STADENROOT"/share/staden/staden.profile
--- a/copy_reads/copy_reads.in
+++ b/copy_reads/copy_reads.in
@@ -67,7 +67,10 @@ find_dir() {
echo $dir
}
-STADENROOT=`find_dir $0`/..; export STADENROOT
+STADENROOT=${STADENROOT:-`find_dir $0`/..}; export STADENROOT
+if [ ! -f "$STADENROOT"/share/staden/staden.profile ] ; then
+ STADENROOT=/usr
+fi
STADEN_PREPEND=1; export STADEN_PREPEND
. "$STADENROOT"/share/staden/staden.profile
--- a/spin_emboss/create_emboss_files
+++ b/spin_emboss/create_emboss_files
@@ -70,7 +70,10 @@ find_dir() {
#
# Run it!
#
-STADENROOT=`find_dir $0`/..; export STADENROOT
+STADENROOT=${STADENROOT:-`find_dir $0`/..}; export STADENROOT
+if [ ! -f "$STADENROOT"/share/staden/staden.profile ] ; then
+ STADENROOT=/usr
+fi
STADLIB=$STADENROOT/lib/staden/; export STADLIB
STADTABL=$STADENROOT/share/staden/etc; export STADTABL
STADTCL=$STADENROOT/share/staden/tcl; export STADTCL
|
