File: stl_decomposition.py

package info (click to toggle)
statsmodels 0.14.6%2Bdfsg-1
  • links: PTS, VCS
  • area: main
  • in suites: sid
  • size: 49,956 kB
  • sloc: python: 254,365; f90: 612; sh: 560; javascript: 337; asm: 156; makefile: 145; ansic: 32; xml: 9
file content (554 lines) | stat: -rw-r--r-- 10,964 bytes parent folder | download | duplicates (2)
1
2
3
4
5
6
7
8
9
10
11
12
13
14
15
16
17
18
19
20
21
22
23
24
25
26
27
28
29
30
31
32
33
34
35
36
37
38
39
40
41
42
43
44
45
46
47
48
49
50
51
52
53
54
55
56
57
58
59
60
61
62
63
64
65
66
67
68
69
70
71
72
73
74
75
76
77
78
79
80
81
82
83
84
85
86
87
88
89
90
91
92
93
94
95
96
97
98
99
100
101
102
103
104
105
106
107
108
109
110
111
112
113
114
115
116
117
118
119
120
121
122
123
124
125
126
127
128
129
130
131
132
133
134
135
136
137
138
139
140
141
142
143
144
145
146
147
148
149
150
151
152
153
154
155
156
157
158
159
160
161
162
163
164
165
166
167
168
169
170
171
172
173
174
175
176
177
178
179
180
181
182
183
184
185
186
187
188
189
190
191
192
193
194
195
196
197
198
199
200
201
202
203
204
205
206
207
208
209
210
211
212
213
214
215
216
217
218
219
220
221
222
223
224
225
226
227
228
229
230
231
232
233
234
235
236
237
238
239
240
241
242
243
244
245
246
247
248
249
250
251
252
253
254
255
256
257
258
259
260
261
262
263
264
265
266
267
268
269
270
271
272
273
274
275
276
277
278
279
280
281
282
283
284
285
286
287
288
289
290
291
292
293
294
295
296
297
298
299
300
301
302
303
304
305
306
307
308
309
310
311
312
313
314
315
316
317
318
319
320
321
322
323
324
325
326
327
328
329
330
331
332
333
334
335
336
337
338
339
340
341
342
343
344
345
346
347
348
349
350
351
352
353
354
355
356
357
358
359
360
361
362
363
364
365
366
367
368
369
370
371
372
373
374
375
376
377
378
379
380
381
382
383
384
385
386
387
388
389
390
391
392
393
394
395
396
397
398
399
400
401
402
403
404
405
406
407
408
409
410
411
412
413
414
415
416
417
418
419
420
421
422
423
424
425
426
427
428
429
430
431
432
433
434
435
436
437
438
439
440
441
442
443
444
445
446
447
448
449
450
451
452
453
454
455
456
457
458
459
460
461
462
463
464
465
466
467
468
469
470
471
472
473
474
475
476
477
478
479
480
481
482
483
484
485
486
487
488
489
490
491
492
493
494
495
496
497
498
499
500
501
502
503
504
505
506
507
508
509
510
511
512
513
514
515
516
517
518
519
520
521
522
523
524
525
526
527
528
529
530
531
532
533
534
535
536
537
538
539
540
541
542
543
544
545
546
547
548
549
550
551
552
553
554
#!/usr/bin/env python
# coding: utf-8

# DO NOT EDIT
# Autogenerated from the notebook stl_decomposition.ipynb.
# Edit the notebook and then sync the output with this file.
#
# flake8: noqa
# DO NOT EDIT

# # Seasonal-Trend decomposition using LOESS (STL)
#
# This note book illustrates the use of `STL` to decompose a time series
# into three components: trend, season(al) and residual. STL uses LOESS
# (locally estimated scatterplot smoothing) to extract smooths estimates of
# the three components.  The key inputs into `STL` are:
#
# * `season` - The length of the seasonal smoother. Must be odd.
# * `trend` - The length of the trend smoother, usually around 150% of
# `season`.  Must be odd and larger than `season`.
# * `low_pass` - The length of the low-pass estimation window, usually the
# smallest odd number larger than the periodicity of the data.
#
# First we import the required packages, prepare the graphics environment,
# and prepare the data.

import matplotlib.pyplot as plt
import pandas as pd
import seaborn as sns
from pandas.plotting import register_matplotlib_converters

register_matplotlib_converters()
sns.set_style("darkgrid")

plt.rc("figure", figsize=(16, 12))
plt.rc("font", size=13)

# ## Atmospheric CO2
#
# The example in Cleveland, Cleveland, McRae, and Terpenning (1990) uses
# CO2 data, which is in the list below.  This monthly data (January 1959 to
# December 1987) has a clear trend and seasonality across the sample.

co2 = [
    315.58,
    316.39,
    316.79,
    317.82,
    318.39,
    318.22,
    316.68,
    315.01,
    314.02,
    313.55,
    315.02,
    315.75,
    316.52,
    317.10,
    317.79,
    319.22,
    320.08,
    319.70,
    318.27,
    315.99,
    314.24,
    314.05,
    315.05,
    316.23,
    316.92,
    317.76,
    318.54,
    319.49,
    320.64,
    319.85,
    318.70,
    316.96,
    315.17,
    315.47,
    316.19,
    317.17,
    318.12,
    318.72,
    319.79,
    320.68,
    321.28,
    320.89,
    319.79,
    317.56,
    316.46,
    315.59,
    316.85,
    317.87,
    318.87,
    319.25,
    320.13,
    321.49,
    322.34,
    321.62,
    319.85,
    317.87,
    316.36,
    316.24,
    317.13,
    318.46,
    319.57,
    320.23,
    320.89,
    321.54,
    322.20,
    321.90,
    320.42,
    318.60,
    316.73,
    317.15,
    317.94,
    318.91,
    319.73,
    320.78,
    321.23,
    322.49,
    322.59,
    322.35,
    321.61,
    319.24,
    318.23,
    317.76,
    319.36,
    319.50,
    320.35,
    321.40,
    322.22,
    323.45,
    323.80,
    323.50,
    322.16,
    320.09,
    318.26,
    317.66,
    319.47,
    320.70,
    322.06,
    322.23,
    322.78,
    324.10,
    324.63,
    323.79,
    322.34,
    320.73,
    319.00,
    318.99,
    320.41,
    321.68,
    322.30,
    322.89,
    323.59,
    324.65,
    325.30,
    325.15,
    323.88,
    321.80,
    319.99,
    319.86,
    320.88,
    322.36,
    323.59,
    324.23,
    325.34,
    326.33,
    327.03,
    326.24,
    325.39,
    323.16,
    321.87,
    321.31,
    322.34,
    323.74,
    324.61,
    325.58,
    326.55,
    327.81,
    327.82,
    327.53,
    326.29,
    324.66,
    323.12,
    323.09,
    324.01,
    325.10,
    326.12,
    326.62,
    327.16,
    327.94,
    329.15,
    328.79,
    327.53,
    325.65,
    323.60,
    323.78,
    325.13,
    326.26,
    326.93,
    327.84,
    327.96,
    329.93,
    330.25,
    329.24,
    328.13,
    326.42,
    324.97,
    325.29,
    326.56,
    327.73,
    328.73,
    329.70,
    330.46,
    331.70,
    332.66,
    332.22,
    331.02,
    329.39,
    327.58,
    327.27,
    328.30,
    328.81,
    329.44,
    330.89,
    331.62,
    332.85,
    333.29,
    332.44,
    331.35,
    329.58,
    327.58,
    327.55,
    328.56,
    329.73,
    330.45,
    330.98,
    331.63,
    332.88,
    333.63,
    333.53,
    331.90,
    330.08,
    328.59,
    328.31,
    329.44,
    330.64,
    331.62,
    332.45,
    333.36,
    334.46,
    334.84,
    334.29,
    333.04,
    330.88,
    329.23,
    328.83,
    330.18,
    331.50,
    332.80,
    333.22,
    334.54,
    335.82,
    336.45,
    335.97,
    334.65,
    332.40,
    331.28,
    330.73,
    332.05,
    333.54,
    334.65,
    335.06,
    336.32,
    337.39,
    337.66,
    337.56,
    336.24,
    334.39,
    332.43,
    332.22,
    333.61,
    334.78,
    335.88,
    336.43,
    337.61,
    338.53,
    339.06,
    338.92,
    337.39,
    335.72,
    333.64,
    333.65,
    335.07,
    336.53,
    337.82,
    338.19,
    339.89,
    340.56,
    341.22,
    340.92,
    339.26,
    337.27,
    335.66,
    335.54,
    336.71,
    337.79,
    338.79,
    340.06,
    340.93,
    342.02,
    342.65,
    341.80,
    340.01,
    337.94,
    336.17,
    336.28,
    337.76,
    339.05,
    340.18,
    341.04,
    342.16,
    343.01,
    343.64,
    342.91,
    341.72,
    339.52,
    337.75,
    337.68,
    339.14,
    340.37,
    341.32,
    342.45,
    343.05,
    344.91,
    345.77,
    345.30,
    343.98,
    342.41,
    339.89,
    340.03,
    341.19,
    342.87,
    343.74,
    344.55,
    345.28,
    347.00,
    347.37,
    346.74,
    345.36,
    343.19,
    340.97,
    341.20,
    342.76,
    343.96,
    344.82,
    345.82,
    347.24,
    348.09,
    348.66,
    347.90,
    346.27,
    344.21,
    342.88,
    342.58,
    343.99,
    345.31,
    345.98,
    346.72,
    347.63,
    349.24,
    349.83,
    349.10,
    347.52,
    345.43,
    344.48,
    343.89,
    345.29,
    346.54,
    347.66,
    348.07,
    349.12,
    350.55,
    351.34,
    350.80,
    349.10,
    347.54,
    346.20,
    346.20,
    347.44,
    348.67,
]
co2 = pd.Series(co2,
                index=pd.date_range("1-1-1959", periods=len(co2), freq="ME"),
                name="CO2")
co2.describe()

# The decomposition requires 1 input, the data series. If the data series
# does not have a frequency, then you must also specify `period`. The
# default value for `seasonal` is 7, and so should also be changed in most
# applications.

from statsmodels.tsa.seasonal import STL

stl = STL(co2, seasonal=13)
res = stl.fit()
fig = res.plot()

# ## Robust Fitting
# Setting `robust` uses a data-dependent weighting function that re-
# weights data when estimating the LOESS (and so is using LOWESS). Using
# robust estimation allows the model to tolerate larger errors that are
# visible on the bottom plot.
#
# Here we use a series the measures the production of electrical equipment
# in the EU.

from statsmodels.datasets import elec_equip as ds

elec_equip = ds.load().data.iloc[:, 0]

# Next, we estimate the model with and without robust weighting.  The
# difference is minor and is most pronounced during the financial crisis of
# 2008. The non-robust estimate places equal weights on all observations and
# so produces smaller errors, on average.  The weights vary between 0 and 1.


def add_stl_plot(fig, res, legend):
    """Add 3 plots from a second STL fit"""
    axs = fig.get_axes()
    comps = ["trend", "seasonal", "resid"]
    for ax, comp in zip(axs[1:], comps):
        series = getattr(res, comp)
        if comp == "resid":
            ax.plot(series, marker="o", linestyle="none")
        else:
            ax.plot(series)
            if comp == "trend":
                ax.legend(legend, frameon=False)


stl = STL(elec_equip, period=12, robust=True)
res_robust = stl.fit()
fig = res_robust.plot()
res_non_robust = STL(elec_equip, period=12, robust=False).fit()
add_stl_plot(fig, res_non_robust, ["Robust", "Non-robust"])

fig = plt.figure(figsize=(16, 5))
lines = plt.plot(res_robust.weights, marker="o", linestyle="none")
ax = plt.gca()
xlim = ax.set_xlim(elec_equip.index[0], elec_equip.index[-1])

# ## LOESS degree
# The default configuration estimates the LOESS model with both a constant
# and a trend.  This can be changed to only include a constant by setting
# `COMPONENT_deg` to 0. Here the degree makes little difference except in
# the trend around the financial crisis of 2008.

stl = STL(elec_equip,
          period=12,
          seasonal_deg=0,
          trend_deg=0,
          low_pass_deg=0,
          robust=True)
res_deg_0 = stl.fit()
fig = res_robust.plot()
add_stl_plot(fig, res_deg_0, ["Degree 1", "Degree 0"])

# ## Performance
# Three options can be used to reduce the computational cost of the STL
# decomposition:
#
# * `seasonal_jump`
# * `trend_jump`
# * `low_pass_jump`
#
# When these are non-zero, the LOESS for component `COMPONENT` is only
# estimated ever `COMPONENT_jump` observations, and linear interpolation is
# used between points. These values should not normally be more than 10-20%
# of the size of `seasonal`, `trend` or `low_pass`, respectively.
#
# The example below shows how these can reduce the computational cost by a
# factor of 15 using simulated data with both a low-frequency cosinusoidal
# trend and a sinusoidal seasonal pattern.

import numpy as np

rs = np.random.RandomState(0xA4FD94BC)
tau = 2000
t = np.arange(tau)
period = int(0.05 * tau)
seasonal = period + ((period % 2) == 0)  # Ensure odd
e = 0.25 * rs.standard_normal(tau)
y = np.cos(t / tau * 2 * np.pi) + 0.25 * np.sin(t / period * 2 * np.pi) + e
plt.plot(y)
plt.title("Simulated Data")
xlim = plt.gca().set_xlim(0, tau)

# First, the base line model is estimated with all jumps equal to 1.

mod = STL(y, period=period, seasonal=seasonal)
res = mod.fit()
fig = res.plot(observed=False, resid=False)

# The jumps are all set to 15% of their window length. Limited linear
# interpolation makes little difference to the fit of the model.

low_pass_jump = seasonal_jump = int(0.15 * (period + 1))
trend_jump = int(0.15 * 1.5 * (period + 1))
mod = STL(
    y,
    period=period,
    seasonal=seasonal,
    seasonal_jump=seasonal_jump,
    trend_jump=trend_jump,
    low_pass_jump=low_pass_jump,
)
res = mod.fit()
fig = res.plot(observed=False, resid=False)

# ## Forecasting with STL
#
# ``STLForecast`` simplifies the process of using STL to remove
# seasonalities and then using a standard time-series model to forecast the
# trend and cyclical components.
#
# Here we use STL to handle the seasonality and then an ARIMA(1,1,0) to
# model the deseasonalized data. The seasonal component is forecast from the
# find full cycle where
#
# $$E[S_{T+h}|\mathcal{F}_T]=\hat{S}_{T-k}$$
#
# where $k= m - h + m \lfloor \frac{h-1}{m} \rfloor$. The forecast
# automatically adds the seasonal component forecast to the ARIMA forecast.

from statsmodels.tsa.arima.model import ARIMA
from statsmodels.tsa.forecasting.stl import STLForecast

elec_equip.index.freq = elec_equip.index.inferred_freq
stlf = STLForecast(elec_equip,
                   ARIMA,
                   model_kwargs=dict(order=(1, 1, 0), trend="t"))
stlf_res = stlf.fit()

forecast = stlf_res.forecast(24)
plt.plot(elec_equip)
plt.plot(forecast)
plt.show()

# ``summary`` contains information about both the time-series model and
# the STL decomposition.

print(stlf_res.summary())