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Source: subread
Maintainer: Debian Med Packaging Team <debian-med-packaging@lists.alioth.debian.org>
Uploaders: Alexandre Mestiashvili <alex@biotec.tu-dresden.de>,
Andreas Tille <tille@debian.org>
Section: science
Testsuite: autopkgtest
Priority: optional
Build-Depends: bc, debhelper (>= 10), help2man, python, zlib1g-dev
Standards-Version: 3.9.8
Vcs-Browser: https://anonscm.debian.org/cgit/debian-med/subread.git
Vcs-Git: https://anonscm.debian.org/git/debian-med/subread.git
Homepage: http://sourceforge.net/projects/subread/
Package: subread
Architecture: amd64 arm64 armel armhf i386 kfreebsd-amd64 kfreebsd-i386 ppc64el
Depends: ${misc:Depends}, ${shlibs:Depends}
Description: toolkit for processing next-gen sequencing data
Subread aligner can be used to align both gDNA-seq and RNA-seq reads.
Subjunc aligner was specified designed for the detection of exon-exon
junction. For the mapping of RNA-seq reads, Subread performs local
alignments and Subjunc performs global alignments.
Package: subread-data
Architecture: all
Depends: ${misc:Depends}, ${shlibs:Depends}
Description: data files for subread package
This package provides data files from the original tarball:
- annotation: Directory including NCBI RefSeq gene annotations for
genomes 'hg19', 'mm10' and 'mm9'. Each row is an exon.
Entrez gene identifiers and chromosomal coordinates are provided for
each exon.
- test: Directory including test data and scripts.
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