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.. (parent) |
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- |
rw-r--r-- |
607 |
across_genes.gtf
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rw-r--r-- |
231 |
across_genes_r1.bam
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rw-r--r-- |
192 |
across_genes_r1.bam.ora
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rw-r--r-- |
391 |
across_genes_r1.sam
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rw-r--r-- |
192 |
across_genes_r1.sam.ora
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rw-r--r-- |
226 |
across_genes_r2.bam
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rw-r--r-- |
192 |
across_genes_r2.bam.ora
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rw-r--r-- |
385 |
across_genes_r2.sam
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- |
rw-r--r-- |
192 |
across_genes_r2.sam.ora
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- |
rw-r--r-- |
226 |
across_intron.gtf
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rw-r--r-- |
245 |
across_intron_r1.bam
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- |
rw-r--r-- |
70 |
across_intron_r1.bam.ora
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rw-r--r-- |
406 |
across_intron_r1.sam
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- |
rw-r--r-- |
70 |
across_intron_r1.sam.ora
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- |
rw-r--r-- |
245 |
across_intron_r2.bam
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- |
rw-r--r-- |
70 |
across_intron_r2.bam.ora
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- |
rw-r--r-- |
407 |
across_intron_r2.sam
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- |
rw-r--r-- |
70 |
across_intron_r2.sam.ora
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- |
rw-r--r-- |
1,562 |
compare.sh
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- |
rw-r--r-- |
172 |
corner-BINS.SAF
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- |
rw-r--r-- |
2,133 |
corner-BINS.sam
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- |
rw-r--r-- |
104 |
corner-BothEnds.ora
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- |
rw-r--r-- |
104 |
corner-Chimeric.ora
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rw-r--r-- |
104 |
corner-DoNotSort.ora
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rw-r--r-- |
149 |
corner-EXON-ONLY.ora
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rw-r--r-- |
104 |
corner-Extend3.ora
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rw-r--r-- |
104 |
corner-Extend5.ora
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- |
rw-r--r-- |
107 |
corner-Fraction.ora
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rw-r--r-- |
271 |
corner-INDEL.ora
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- |
rw-r--r-- |
4,418 |
corner-INDEL.sam
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- |
rw-r--r-- |
103 |
corner-IgnoreDup.ora
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rw-r--r-- |
944 |
corner-JUNC-ONLY.ora
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rw-r--r-- |
274 |
corner-JUNC.ora
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- |
rw-r--r-- |
10,834 |
corner-JUNC.sam
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rw-r--r-- |
104 |
corner-Jcounts-FA.ora
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- |
rw-r--r-- |
11,447 |
corner-Jcounts-FA.ora.jcounts
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rw-r--r-- |
104 |
corner-Jcounts.ora
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rw-r--r-- |
11,975 |
corner-Jcounts.ora.jcounts
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rw-r--r-- |
104 |
corner-LargestOverlap.ora
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rw-r--r-- |
104 |
corner-MaxOPs.ora
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rw-r--r-- |
104 |
corner-MinMAPQ.ora
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rw-r--r-- |
121 |
corner-MinOverlap.ora
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rw-r--r-- |
104 |
corner-MultiMapping.ora
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rw-r--r-- |
252 |
corner-NH-PM.ora
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rw-r--r-- |
265 |
corner-NH.ora
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- |
rw-r--r-- |
27,542 |
corner-NH.sam
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- |
rw-r--r-- |
283 |
corner-ONEEND-BOTH.ora
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- |
rw-r--r-- |
278 |
corner-ONEEND.ora
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- |
rw-r--r-- |
9,749 |
corner-ONEEND.sam
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- |
rw-r--r-- |
104 |
corner-PEdist.ora
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- |
rw-r--r-- |
104 |
corner-Read2Pos3.ora
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- |
rw-r--r-- |
104 |
corner-Read2Pos5.ora
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- |
rw-r--r-- |
122 |
corner-fractions.SAF
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- |
rw-r--r-- |
24 |
corner-fractions.ora
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- |
rw-r--r-- |
304 |
corner-fractions.sam
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- |
rw-r--r-- |
10,918 |
corner-reduction.sam
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- |
rw-r--r-- |
221 |
intron_between.bam
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rw-r--r-- |
48 |
intron_between.bam.ora
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rw-r--r-- |
151 |
intron_between.gtf
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rw-r--r-- |
379 |
intron_between.sam
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- |
rw-r--r-- |
48 |
intron_between.sam.ora
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- |
rw-r--r-- |
206 |
intron_between_nointron.bam
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- |
rw-r--r-- |
48 |
intron_between_nointron.bam.ora
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- |
rw-r--r-- |
374 |
intron_between_nointron.sam
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- |
rw-r--r-- |
48 |
intron_between_nointron.sam.ora
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- |
rw-r--r-- |
2,683 |
test-chralias.GTF
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- |
rw-r--r-- |
907 |
test-chralias.SAF
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- |
rw-r--r-- |
334 |
test-chralias.ora
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- |
rw-r--r-- |
369,952 |
test-chralias.sam
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- |
rw-r--r-- |
16 |
test-chralias.txt
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- |
rw-r--r-- |
898 |
test-chrname.SAF
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- |
rw-r--r-- |
301 |
test-chrname.ora
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- |
rw-r--r-- |
373,760 |
test-chrname.sam
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rw-r--r-- |
316,634 |
test-dup.sam
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rw-r--r-- |
43 |
test-fracOverlap.ora
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rw-r--r-- |
218 |
test-fracOverlap.sam
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- |
rw-r--r-- |
1,468,627 |
test-junc.sam
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- |
rw-r--r-- |
292 |
test-minimum-35ext.ora
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rw-r--r-- |
290 |
test-minimum-3ext.ora
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rw-r--r-- |
290 |
test-minimum-5ext.ora
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rw-r--r-- |
847 |
test-minimum-5reduce.ora
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rw-r--r-- |
936 |
test-minimum-FL.ora
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rw-r--r-- |
282 |
test-minimum-O.ora
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rw-r--r-- |
278 |
test-minimum-PE.ora
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rw-r--r-- |
275 |
test-minimum-SE.ora
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rw-r--r-- |
284 |
test-minimum-STR.ora
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rw-r--r-- |
285 |
test-minimum-UNSTR.ora
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rw-r--r-- |
278 |
test-minimum-dup.ora
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- |
rw-r--r-- |
2,039 |
test-minimum.GTF
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rw-r--r-- |
756 |
test-minimum.SAF
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- |
rw-r--r-- |
58,158 |
test-minimum.bam
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rw-r--r-- |
275 |
test-minimum.ora
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- |
rw-r--r-- |
316,184 |
test-minimum.sam
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