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Source: subread
Maintainer: Debian Med Packaging Team <debian-med-packaging@lists.alioth.debian.org>
Uploaders: Alexandre Mestiashvili <mestia@debian.org>,
Andreas Tille <tille@debian.org>
Section: science
Priority: optional
Build-Depends: bc <!nocheck>,
debhelper-compat (= 13),
architecture-is-little-endian,
python3 <!nocheck>,
zlib1g-dev
Standards-Version: 4.7.2
Vcs-Browser: https://salsa.debian.org/med-team/subread
Vcs-Git: https://salsa.debian.org/med-team/subread.git
Homepage: http://sourceforge.net/projects/subread/
Rules-Requires-Root: no
Package: subread
Architecture: any
Depends: ${misc:Depends},
${shlibs:Depends}
Description: toolkit for processing next-gen sequencing data
Subread aligner can be used to align both gDNA-seq and RNA-seq reads.
Subjunc aligner was specified designed for the detection of exon-exon
junction. For the mapping of RNA-seq reads, Subread performs local
alignments and Subjunc performs global alignments.
Package: subread-data
Architecture: all
Depends: ${misc:Depends},
${shlibs:Depends}
Multi-Arch: foreign
Description: data files for subread package
This package provides data files from the original tarball:
- annotation: Directory including NCBI RefSeq gene annotations for
genomes 'hg19', 'hg39', 'mm9', 'mm10', and 'mm39'. Each row is an exon.
Entrez gene identifiers and chromosomal coordinates are provided for
each exon.
- test: Directory including test data and scripts.
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