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#!/usr/bin/make -f
export DH_VERBOSE=1
export DEB_BUILD_MAINT_OPTIONS = hardening=+all
include /usr/share/dpkg/architecture.mk
ifeq ($(origin CC),default)
CC = $(DEB_HOST_GNU_TYPE)-gcc
endif
ifeq ($(DEB_HOST_ARCH),$(filter $(DEB_HOST_ARCH),amd64 i386))
CFLAGS += -mtune=generic -msse3
endif
ifeq ($(DEB_HOST_ARCH_OS), kfreebsd)
CFLAGS += -D KFREEBSD
endif
%:
dh $@ --buildsystem=makefile
override_dh_auto_clean:
dh_auto_clean
rm -f test/subread-align/data/test-err-mut-r1.fq.gz test/subread-align/data/test-err-mut-r2.fq.gz
rm -rf bin src/longread-one/make.version
find . -name "*.o" -delete
dh_auto_clean --sourcedirectory=src -- -f Makefile.Linux
override_dh_auto_build:
dh_auto_build --sourcedirectory=src -- -f Makefile.Linux CC=$(CC) ; \
override_dh_auto_test:
ifeq (,$(filter nocheck,$(DEB_BUILD_OPTIONS)))
debian/tests/subread-tests $(CURDIR)
endif
override_dh_auto_install:
#fix for gzip-file-is-not-multi-arch-same-safe
cp annotation/mm39_RefSeq_exon.txt.gz debian/mm39_RefSeq_exon.txt.gz.orig
find $(CURDIR) -name "*.gz" -exec bash -c 'name="{}"; gzip -d "{}"; gzip -n "$${name%.*}"' \;
dh_auto_install
mv debian/mm39_RefSeq_exon.txt.gz.orig annotation/mm39_RefSeq_exon.txt.gz
override_dh_installexamples-indep:
tar --sort=name \
--mtime="@${SOURCE_DATE_EPOCH}" \
--owner=root --group=root --numeric-owner \
--mode=go=rX,u+rw,a-s \
-cJf $(CURDIR)/debian/subread-data/usr/share/doc/subread/examples/test.tar.xz test/
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