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Bug-Database: https://sourceforge.net/p/subread/bugs/
Bug-Submit: https://support.bioconductor.org/
Changelog: https://subread.sourceforge.net/
Documentation: https://subread.sourceforge.net/SubreadUsersGuide.pdf
Archive: SourceForge
Reference:
- # If you use Rsubread, you can cite:
Author: Yang Lian and Gordon K. Smyth and Wei Shi
Title: The R package Rsubread is easier, faster, cheaper and better for alignment and quantification of RNA sequencing reads
Journal: Nucleic Acids Research
Year: 2019
Volume: 47
Number: 8
Pages: e47-e47
DOI: 10.1093/nar/gkz114
PMID: 30783653
URL: https://www.ncbi.nlm.nih.gov/pmc/articles/pmid/30783653/
- # If you use Subread or Subjunc aligners, you can cite:
Author: Yang Lian and Gordon K. Smyth and Wei Shi
Title: |
The Subread aligner: fast, accurate and scalable read mapping by seed-and-vote
Journal: Nucleic Acids Research
Year: 2013
Volume: 41
Number: 10
Pages: e108–e108
DOI: 10.1093/nar/gkt214
PMID: 23558742
URL: https://www.ncbi.nlm.nih.gov/pmc/articles/pmid/23558742/
Publisher: Oxford University Press (OUP)
Type: article
- # If you use featureCounts, you can cite:
Author: Yang Lian and Gordon K. Smyth and Wei Shi
Title: |
featureCounts: an efficient general purpose program for assigning sequence reads to genomic features
Journal: Bioinformatics
Year: 2014
Volume: 30
Number: 7
Pages: 923–930
DOI: 10.1093/bioinformatics/btt656
PMID: 24227677
URL: https://academic.oup.com/bioinformatics/article/30/7/923/232889?
- # If you use Rsubread inbuilt annotations, you can cite:
Author: David Chisanga and Yang Liao and Wei Shi}
Title: Impact of gene annotation choice on the quantification of RNA-seq data
Journal: BMC Bioinformatics
Year: 2022
Volume: 23
Number: 1
DOI: 10.1186/s12859-022-04644-8
PMID: 35354358
URL: https://www.ncbi.nlm.nih.gov/pmc/articles/pmid/35354358/
Registry:
- Name: OMICtools
Entry: OMICS_01255
- Name: SciCrunch
Entry: SCR_009803
- Name: bio.tools
Entry: subread
- Name: conda:bioconda
Entry: subread
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