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/* suitename.h */
#include <stdlib.h>
#include <stdio.h>
#include <math.h>
#include <string.h>
#include <ctype.h>
#define MAXBINS 14 /*1--12 named bins, bin 0 triaged, bin 13 incomplete*/
#define MAXCLST 16 /*practical, <observed, limit of clusters in a bin*/
/*clst indexed from 1: bin 33p had 10, index to 11, as of 070428 */
/* main defines EXTERN as nothing ( "" ), so really does the declarations */
/* if EXTERN not defined, then it is defined as "extern" so only referenced*/
#ifdef EXTERN
#undef EXTERN
#define EXTERN /*no prefix, so do definition */
#else
#undef EXTERN
#define EXTERN extern /*extern prefix so just declaration*/
#endif
#define EOLO "\n" /*for UNIX_X11 */
#define CRLF "\n" /*for UNIX_X11 */
EXTERN int Ltest;
EXTERN FILE *fpin,*fpout; /*070210 input stdin, output stdout*/
EXTERN char version[256];
EXTERN int LatEOF;
EXTERN int Lhitend;
EXTERN int itext;
EXTERN char texts[256];
typedef struct suitestruct {
char ptID[256];
char basechr[2]; /*070412*/
float chim;
float deltam;
float epsilon;
float zeta;
float alpha;
float beta;
float gamma;
float delta;
float chi;
float ang[9]; /*8 to allow count from 1, */
/*9 to save chi-1, chi OR theta, eta angles 070524*/
/*stores as names for readability, and indexed for computations*/
}suitestruct;
EXTERN struct suitestruct* suiteptr;
typedef struct residuestruct {
char ptID[10][32];
char basechr[2]; /*070412*/
float alpha;
float beta;
float gamma;
float delta;
float epsilon;
float zeta;
}residuestruct;
EXTERN residuestruct* residueptr;
EXTERN residuestruct* newresidueptr;
EXTERN residuestruct* oldresidueptr;
EXTERN float matches[MAXBINS][MAXCLST];
/*incl 1--12 named bins, # defined clsters070429*/
EXTERN float coordw[8]; /*general weightings*/
EXTERN float dominantw[8]; /*weights of dominant next to a satellite*/
EXTERN float satellitew[8]; /*weights of satellite next to a dominant*/
/*prototypes*/
/*main(int argc, char** argv)*/
int evaluatesuite(void);
void membership(int);
void clearmatches(void);
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