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//------------------------------------------------------------------------------
// gb_get_shallow: create a shallow copy of a built-in sparse matrix
//------------------------------------------------------------------------------
// SuiteSparse:GraphBLAS, Timothy A. Davis, (c) 2017-2022, All Rights Reserved.
// SPDX-License-Identifier: Apache-2.0
//------------------------------------------------------------------------------
// A = gb_get_shallow (X) constructs a shallow GrB_Matrix from a built-in
// mxArray, which can either be a built-in sparse matrix (double, complex, or
// logical) or a built-in struct that contains a GraphBLAS matrix.
// X must not be NULL, but it can be an empty matrix, as X = [ ] or even X = ''
// (the empty string). In this case, A is returned as NULL. This is not an
// error here, since the caller might be getting an optional input matrix, such
// as Cin or the Mask.
// For v4, iso is false, and the s component has length 9.
// For v5, iso is present but false, and the s component has length 10.
// For v5_1, iso is true/false, and the s component has length 10.
// For v7_3: the same content as v5_1, except that Yp, Yi, and Yx are added.
// mxGetData is used instead of the MATLAB-recommended mxGetDoubles, etc,
// because mxGetData works best for Octave, and it works fine for MATLAB
// since GraphBLAS requires R2018a with the interleaved complex data type.
#include "gb_interface.h"
#include "GB_make_shallow.h"
#define IF(error,message) \
CHECK_ERROR (error, "invalid GraphBLAS struct (" message ")" ) ;
GrB_Matrix gb_get_shallow // return a shallow copy of built-in sparse matrix
(
const mxArray *X
)
{
//--------------------------------------------------------------------------
// check inputs
//--------------------------------------------------------------------------
CHECK_ERROR (X == NULL, "matrix missing") ;
//--------------------------------------------------------------------------
// construct the shallow GrB_Matrix
//--------------------------------------------------------------------------
GrB_Matrix A = NULL, Y = NULL ;
if (gb_mxarray_is_empty (X))
{
//----------------------------------------------------------------------
// matrix is empty
//----------------------------------------------------------------------
// X is a 0-by-0 built-in matrix. Create a new 0-by-0 matrix of the
// same type as X, with the default format.
OK (GrB_Matrix_new (&A, gb_mxarray_type (X), 0, 0)) ;
}
else if (mxIsStruct (X))
{
//----------------------------------------------------------------------
// construct a shallow GrB_Matrix copy from a built-in struct
//----------------------------------------------------------------------
bool GraphBLASv4 = false ;
bool GraphBLASv3 = false ;
// get the type
mxArray *mx_type = mxGetField (X, 0, "GraphBLASv7_3") ;
if (mx_type == NULL)
{
// check if it is a GraphBLASv5_1 struct
mx_type = mxGetField (X, 0, "GraphBLASv5_1") ;
}
if (mx_type == NULL)
{
// check if it is a GraphBLASv5 struct
mx_type = mxGetField (X, 0, "GraphBLASv5") ;
}
if (mx_type == NULL)
{
// check if it is a GraphBLASv4 struct
mx_type = mxGetField (X, 0, "GraphBLASv4") ;
GraphBLASv4 = true ;
}
if (mx_type == NULL)
{
// check if it is a GraphBLASv3 struct
mx_type = mxGetField (X, 0, "GraphBLAS") ;
GraphBLASv3 = true ;
}
CHECK_ERROR (mx_type == NULL, "not a GraphBLAS struct") ;
GrB_Type type = gb_mxstring_to_type (mx_type) ;
size_t type_size ;
OK (GxB_Type_size (&type_size, type)) ;
// get the scalar info
mxArray *opaque = mxGetField (X, 0, "s") ;
IF (opaque == NULL, ".s missing") ;
IF (mxGetM (opaque) != 1, ".s wrong size") ;
size_t s_size = mxGetN (opaque) ;
if (GraphBLASv3)
{
IF (s_size != 8, ".s wrong size") ;
}
else if (GraphBLASv4)
{
IF (s_size != 9, ".s wrong size") ;
}
else
{
IF (s_size != 10, ".s wrong size") ;
}
int64_t *s = (int64_t *) mxGetData (opaque) ;
int64_t plen = s [0] ;
int64_t vlen = s [1] ;
int64_t vdim = s [2] ;
int64_t nvec = s [3] ;
int64_t nvec_nonempty = s [4] ;
bool by_col = (bool) (s [6]) ;
int64_t nzmax = s [7] ;
int sparsity_status, sparsity_control ;
int64_t nvals ;
bool iso ;
if (GraphBLASv3)
{
// GraphBLASv3 struct: sparse or hypersparse only
sparsity_control = GxB_AUTO_SPARSITY ;
nvals = 0 ;
iso = false ;
}
else
{
// GraphBLASv4 or v5 struct: sparse, hypersparse, bitmap, or full
sparsity_control = (int) (s [5]) ;
nvals = s [8] ;
if (GraphBLASv4)
{
// GraphBLASv4: iso is always false
iso = false ;
}
else
{
// GraphBLASv5 and GraphBLASv5_1: iso is present as s [9]
// GraphBLASv5: iso is present as s [9] but always false
iso = (bool) s [9] ;
}
}
int nfields = mxGetNumberOfFields (X) ;
switch (nfields)
{
case 3 :
// A is full, with 3 fields: GraphBLAS*, s, x
sparsity_status = GxB_FULL ;
break ;
case 5 :
// A is sparse, with 5 fields: GraphBLAS*, s, x, p, i
sparsity_status = GxB_SPARSE ;
break ;
case 6 :
case 9 :
// A is hypersparse, with 6 fields: GraphBLAS*, s, x, p, i, h
// or with 9 fields: Yp, Yi, and Yx added.
sparsity_status = GxB_HYPERSPARSE ;
break ;
case 4 :
// A is bitmap, with 4 fields: GraphBLAS*, s, x, b
sparsity_status = GxB_BITMAP ;
break ;
default : ERROR ("invalid GraphBLAS struct") ;
}
// each component
uint64_t *Ap = NULL ; size_t Ap_size = 0 ;
uint64_t *Ah = NULL ; size_t Ah_size = 0 ;
int8_t *Ab = NULL ; size_t Ab_size = 0 ;
uint64_t *Ai = NULL ; size_t Ai_size = 0 ;
void *Ax = NULL ; size_t Ax_size = 0 ;
uint64_t *Yp = NULL ; size_t Yp_size = 0 ;
uint64_t *Yi = NULL ; size_t Yi_size = 0 ;
void *Yx = NULL ; size_t Yx_size = 0 ;
int64_t yvdim = 0 ;
if (sparsity_status == GxB_HYPERSPARSE || sparsity_status == GxB_SPARSE)
{
// A is hypersparse or sparse
// get Ap
mxArray *Ap_mx = mxGetField (X, 0, "p") ;
IF (Ap_mx == NULL, ".p missing") ;
IF (mxGetM (Ap_mx) != 1, ".p wrong size") ;
Ap = (int64_t *) mxGetData (Ap_mx) ;
Ap_size = mxGetN (Ap_mx) * sizeof (int64_t) ;
// get Ai
mxArray *Ai_mx = mxGetField (X, 0, "i") ;
IF (Ai_mx == NULL, ".i missing") ;
IF (mxGetM (Ai_mx) != 1, ".i wrong size") ;
Ai_size = mxGetN (Ai_mx) * sizeof (int64_t) ;
Ai = (Ai_size == 0) ? NULL : ((int64_t *) mxGetData (Ai_mx)) ;
}
// get the values
mxArray *Ax_mx = mxGetField (X, 0, "x") ;
IF (Ax_mx == NULL, ".x missing") ;
IF (mxGetM (Ax_mx) != 1, ".x wrong size") ;
Ax_size = mxGetN (Ax_mx) ;
Ax = (Ax_size == 0) ? NULL : ((void *) mxGetData (Ax_mx)) ;
if (sparsity_status == GxB_HYPERSPARSE)
{
// A is hypersparse
// get the hyperlist
mxArray *Ah_mx = mxGetField (X, 0, "h") ;
IF (Ah_mx == NULL, ".h missing") ;
IF (mxGetM (Ah_mx) != 1, ".h wrong size") ;
Ah_size = mxGetN (Ah_mx) * sizeof (uint64_t) ;
Ah = (Ah_size == 0) ? NULL : ((uint64_t *) mxGetData (Ah_mx)) ;
// get the A->Y hyper_hash, if it exists
if (nfields == 9)
{
// get Yp, Yi, and Yx
// Yp must be 1-by-(yvdim+1)
mxArray *Yp_mx = mxGetField (X, 0, "Yp") ;
IF (Yp_mx == NULL, ".Yp missing") ;
IF (mxGetM (Yp_mx) != 1, ".Yp wrong size") ;
yvdim = mxGetN (Yp_mx) - 1 ;
Yp_size = mxGetN (Yp_mx) * sizeof (uint64_t) ;
Yp = (Yp_size == 0) ? NULL : ((uint64_t *) mxGetData (Yp_mx)) ;
// Yi must be 1-by-nvec
mxArray *Yi_mx = mxGetField (X, 0, "Yi") ;
IF (Yi_mx == NULL, ".Yi missing") ;
IF (mxGetM (Yi_mx) != 1, ".Yi wrong size") ;
IF (mxGetN (Yi_mx) != nvec, ".Yi wrong size") ;
Yi_size = mxGetN (Yi_mx) * sizeof (uint64_t) ;
Yi = (Yi_size == 0) ? NULL : ((uint64_t *) mxGetData (Yi_mx)) ;
// Yx must be 1-by-nvec
mxArray *Yx_mx = mxGetField (X, 0, "Yx") ;
IF (Yx_mx == NULL, ".Yx missing") ;
IF (mxGetM (Yx_mx) != 1, ".Yx wrong size") ;
IF (mxGetN (Yx_mx) != nvec, ".Yx wrong size") ;
Yx_size = mxGetN (Yx_mx) * sizeof (int64_t) ;
Yx = (Yx_size == 0) ? NULL : ((void *) mxGetData (Yx_mx)) ;
}
}
if (sparsity_status == GxB_BITMAP)
{
// A is bitmap
// get the bitmap
mxArray *Ab_mx = mxGetField (X, 0, "b") ;
IF (Ab_mx == NULL, ".b missing") ;
IF (mxGetM (Ab_mx) != 1, ".b wrong size") ;
Ab_size = mxGetN (Ab_mx) ;
Ab = (Ab_size == 0) ? NULL : ((int8_t *) mxGetData (Ab_mx)) ;
}
//----------------------------------------------------------------------
// import the matrix
//----------------------------------------------------------------------
int64_t nrows = (by_col) ? vlen : vdim ;
int64_t ncols = (by_col) ? vdim : vlen ;
OK (GrB_Matrix_new (&A, type, nrows, ncols)) ;
switch (sparsity_status)
{
case GxB_FULL :
if (by_col)
{
OK (GxB_Matrix_pack_FullC (A,
&Ax, Ax_size, iso, NULL)) ;
}
else
{
OK (GxB_Matrix_pack_FullR (A,
&Ax, Ax_size, iso, NULL)) ;
}
break ;
case GxB_SPARSE :
if (by_col)
{
OK (GxB_Matrix_pack_CSC (A,
&Ap, &Ai, &Ax, Ap_size, Ai_size, Ax_size, iso,
false, NULL)) ;
}
else
{
OK (GxB_Matrix_pack_CSR (A,
&Ap, &Ai, &Ax, Ap_size, Ai_size, Ax_size, iso,
false, NULL)) ;
}
break ;
case GxB_HYPERSPARSE :
if (by_col)
{
OK (GxB_Matrix_pack_HyperCSC (A,
&Ap, &Ah, &Ai, &Ax,
Ap_size, Ah_size, Ai_size, Ax_size, iso,
nvec, false, NULL)) ;
}
else
{
OK (GxB_Matrix_pack_HyperCSR (A,
&Ap, &Ah, &Ai, &Ax,
Ap_size, Ah_size, Ai_size, Ax_size, iso,
nvec, false, NULL)) ;
}
break ;
case GxB_BITMAP :
if (by_col)
{
OK (GxB_Matrix_pack_BitmapC (A,
&Ab, &Ax, Ab_size, Ax_size, iso, nvals, NULL)) ;
}
else
{
OK (GxB_Matrix_pack_BitmapR (A,
&Ab, &Ax, Ab_size, Ax_size, iso, nvals, NULL)) ;
}
break ;
default: ;
}
//----------------------------------------------------------------------
// import the A->Y hyper_hash
//----------------------------------------------------------------------
if (yvdim > 0)
{
// A->Y is sparse, uint64, (A->vdim)-by-yvdim, held by column
OK (GrB_Matrix_new (&Y, GrB_UINT64, vdim, yvdim)) ;
OK (GxB_Matrix_Option_set (Y, GxB_FORMAT, GxB_BY_COL)) ;
OK (GxB_Matrix_pack_CSC (Y,
&Yp, &Yi, &Yx, Yp_size, Yi_size, Yx_size, false,
false, NULL)) ;
OK (GxB_Matrix_Option_set (Y, GxB_SPARSITY_CONTROL, GxB_SPARSE)) ;
OK (GxB_pack_HyperHash (A, &Y, NULL)) ;
}
// tell GraphBLAS the matrix is shallow
GB (make_shallow) (A) ;
}
else
{
//----------------------------------------------------------------------
// construct a shallow GrB_Matrix copy of a built-in matrix
//----------------------------------------------------------------------
// get the type and dimensions
bool X_is_sparse = mxIsSparse (X) ;
GrB_Type type = gb_mxarray_type (X) ;
GrB_Index nrows = (GrB_Index) mxGetM (X) ;
GrB_Index ncols = (GrB_Index) mxGetN (X) ;
OK (GrB_Matrix_new (&A, type, nrows, ncols)) ;
// get Xp, Xi, nzmax, or create them
GrB_Index *Xp, *Xi, nzmax ;
if (X_is_sparse)
{
// get the nzmax, Xp, and Xi from the built-in sparse matrix X
nzmax = (GrB_Index) mxGetNzmax (X) ;
Xp = (GrB_Index *) mxGetJc (X) ;
Xi = (GrB_Index *) mxGetIr (X) ;
}
else
{
// X is a built-in full matrix; so is the GrB_Matrix
nzmax = nrows * ncols ;
Xp = NULL ;
Xi = NULL ;
}
// get the numeric data
void *Xx = NULL ;
size_t type_size = 0 ;
if (type == GrB_FP64)
{
// built-in sparse or full double matrix
Xx = mxGetData (X) ;
type_size = sizeof (double) ;
}
else if (type == GxB_FC64)
{
// built-in sparse or full double complex matrix
Xx = mxGetData (X) ;
type_size = 2 * sizeof (double) ;
}
else if (type == GrB_BOOL)
{
// built-in sparse or full logical matrix
Xx = mxGetData (X) ;
type_size = sizeof (bool) ;
}
else if (X_is_sparse)
{
// Built-in sparse matrices do not support any other kinds
ERROR ("unsupported type") ;
}
else if (type == GrB_INT8)
{
// full int8 matrix
Xx = mxGetData (X) ;
type_size = sizeof (int8_t) ;
}
else if (type == GrB_INT16)
{
// full int16 matrix
Xx = mxGetData (X) ;
type_size = sizeof (int16_t) ;
}
else if (type == GrB_INT32)
{
// full int32 matrix
Xx = mxGetData (X) ;
type_size = sizeof (int32_t) ;
}
else if (type == GrB_INT64)
{
// full int64 matrix
Xx = mxGetData (X) ;
type_size = sizeof (int64_t) ;
}
else if (type == GrB_UINT8)
{
// full uint8 matrix
Xx = mxGetData (X) ;
type_size = sizeof (uint8_t) ;
}
else if (type == GrB_UINT16)
{
// full uint16 matrix
Xx = mxGetData (X) ;
type_size = sizeof (uint16_t) ;
}
else if (type == GrB_UINT32)
{
// full uint32 matrix
Xx = mxGetData (X) ;
type_size = sizeof (uint32_t) ;
}
else if (type == GrB_UINT64)
{
// full uint64 matrix
Xx = mxGetData (X) ;
type_size = sizeof (uint64_t) ;
}
else if (type == GrB_FP32)
{
// full single matrix
Xx = mxGetData (X) ;
type_size = sizeof (float) ;
}
else if (type == GxB_FC32)
{
// full single complex matrix
Xx = mxGetData (X) ;
type_size = 2 * sizeof (float) ;
}
else
{
ERROR ("unsupported type") ;
}
if (X_is_sparse)
{
// import the matrix in CSC format. This sets Xp, Xi, and Xx to
// NULL, but it does not change the built-in matrix they came from.
OK (GxB_Matrix_pack_CSC (A,
&Xp, &Xi, &Xx,
(ncols+1) * sizeof (int64_t),
nzmax * sizeof (int64_t),
nzmax * type_size, false, false, NULL)) ;
}
else
{
// import a full matrix
OK (GxB_Matrix_pack_FullC (A,
&Xx, nzmax * type_size, false, NULL)) ;
}
// tell GraphBLAS the matrix is shallow
GB (make_shallow) (A) ;
}
//--------------------------------------------------------------------------
// return the result
//--------------------------------------------------------------------------
return (A) ;
}
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