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//------------------------------------------------------------------------------
// gb_interface.h: definitions the SuiteSparse:GraphBLAS interface
//------------------------------------------------------------------------------
// SuiteSparse:GraphBLAS, Timothy A. Davis, (c) 2017-2022, All Rights Reserved.
// SPDX-License-Identifier: Apache-2.0
//------------------------------------------------------------------------------
// This interface depends heavily on internal details of the
// SuiteSparse:GraphBLAS library. Thus, GB.h is #include'd, not just
// GraphBLAS.h.
#ifndef GB_INTERFACE_H
#define GB_INTERFACE_H
#include "GB_helper.h"
#include "mex.h"
#include <ctype.h>
//------------------------------------------------------------------------------
// error handling and test coverage
//------------------------------------------------------------------------------
#ifdef GBCOV
#define GBCOV_MAX 1000
extern int64_t gbcov [GBCOV_MAX] ;
extern int gbcov_max ;
void gbcov_get (void) ;
void gbcov_put (void) ;
#define GB_COV_PUT gbcov_put ( )
#else
#define GB_COV_PUT
#endif
#define GB_WRAPUP \
{ \
GB_COV_PUT ; \
if (GB_Global_memtable_n ( ) != 0) \
{ \
printf ("GrB memory leak!\n") ; \
GB_Global_memtable_dump ( ) ; \
mexErrMsgIdAndTxt ("GrB:error", "memory leak") ; \
} \
}
#define ERROR2(message, arg) \
{ \
GB_COV_PUT ; \
mexErrMsgIdAndTxt ("GrB:error", message, arg) ; \
}
#define ERROR(message) \
{ \
GB_COV_PUT ; \
mexErrMsgIdAndTxt ("GrB:error", message) ; \
}
#define CHECK_ERROR(error,message) if (error) ERROR (message) ;
#define OK(method) \
{ \
GrB_Info info = method ; \
if (info != GrB_SUCCESS) \
{ \
ERROR (gb_error (info)) ; \
} \
}
#define OK0(method) \
{ \
GrB_Info info = method ; \
if (!(info == GrB_SUCCESS || info == GrB_NO_VALUE)) \
{ \
ERROR (gb_error (info)) ; \
} \
}
#define OK1(C,method) \
{ \
if ((method) != GrB_SUCCESS) \
{ \
const char *message ; \
GrB_Matrix_error (&message, C) ; \
ERROR (message) ; \
} \
}
//------------------------------------------------------------------------------
// basic macros
//------------------------------------------------------------------------------
// MATCH(s,t) compares two strings and returns true if equal
#define MATCH(s,t) (strcmp(s,t) == 0)
#define MAX(a,b) (((a) > (b)) ? (a) : (b))
// largest integer representable as a double
#define FLINTMAX (((int64_t) 1) << 53)
//------------------------------------------------------------------------------
// typedefs
//------------------------------------------------------------------------------
typedef enum // output of GrB.methods
{
KIND_GRB = 0, // return a struct containing a GrB_Matrix
KIND_SPARSE = 1, // return a built-in sparse matrix
KIND_FULL = 2, // return a built-in full matrix
KIND_BUILTIN = 3 // return a built-in sparse or full matrix (full if all
// entries present, sparse otherwise)
}
kind_enum_t ;
// [I,J,X] = GrB.extracttuples (A, desc) can return I and J in three ways:
//
// one-based double: just like [I,J,X] = find (A)
// one-based int64: I and J are one-based, as built-in but int64.
// zero-based int64: I and J are zero-based, and int64. This is meant
// for internal use in GrB methods, but it is also
// the
//
// The descriptor is also used for GrB.build, GrB.extract, GrB.assign, and
// GrB.subassign. In that case, the type is determined by the input arrays I
// and J.
//
// desc.base can be one of several strings:
//
// 'default' the default is used
// 'zero-based' the type is always int64
// 'one-based' the type is inferred from the inputs I and J
// 'one-based int' the type is int64, and one-based
// 'one-based double' the type is double, and one-based
//
// Note that there is no option for zero-based double.
typedef enum // type of indices
{
BASE_DEFAULT = 0, // The type is determined automatically. It is
// BASE_1_DOUBLE, unless the dimensions are
// too big for a flint (max(size(A)) > flintmax). In
// that case, BASE_1_INT64 is used.
BASE_0_INT64 = 1, // indices are returned as zero-based int64 values
BASE_1_INT64 = 2, // indices are returned as one-based int64
BASE_1_DOUBLE = 3 // this is the typical default: one-based double
}
base_enum_t ;
//------------------------------------------------------------------------------
// gb_double_to_integer: convert a double to int64_t and check conversion
//------------------------------------------------------------------------------
static inline int64_t gb_double_to_integer (double x)
{
int64_t i = (int64_t) x ;
CHECK_ERROR (x != (double) i, "index must be integer") ;
return (i) ;
}
//------------------------------------------------------------------------------
// function prototypes
//------------------------------------------------------------------------------
GrB_Type gb_mxarray_type // return the GrB_Type of a built-in matrix
(
const mxArray *X
) ;
GrB_Type gb_mxstring_to_type // return the GrB_Type from a built-in string
(
const mxArray *S // built-in mxArray containing a string
) ;
void gb_mxstring_to_string // copy a built-in string into a C string
(
char *string, // size at least maxlen+1
const size_t maxlen, // length of string
const mxArray *S, // built-in mxArray containing a string
const char *name // name of the mxArray
) ;
GrB_Matrix gb_get_shallow // return a shallow copy of built-in sparse matrix
(
const mxArray *X
) ;
GrB_Matrix gb_get_deep // return a deep GrB_Matrix copy of a built-in X
(
const mxArray *X // input built-in matrix (sparse or struct)
) ;
mxArray * gb_type_to_mxstring // return the built-in string from a GrB_Type
(
const GrB_Type type
) ;
GrB_Matrix gb_typecast // C = (type) A, where C is deep
(
GrB_Matrix A, // may be shallow
GrB_Type type, // if NULL, copy but do not typecast
GxB_Format_Value fmt, // format of C
int sparsity // sparsity control for C, if 0 use A
) ;
GrB_Matrix gb_new // create and empty matrix C
(
GrB_Type type, // type of C
GrB_Index nrows, // # of rows
GrB_Index ncols, // # of rows
GxB_Format_Value fmt, // requested format
int sparsity // sparsity control for C, 0 for default
) ;
void gb_abort ( void ) ; // failure
int gb_flush ( void ) ; // flush mexPrintf output to Command Window
void gb_usage // check usage and make sure GxB_init has been called
(
bool ok, // if false, then usage is not correct
const char *message // error message if usage is not correct
) ;
const char *gb_error // return an error string from a GrB_Info value
(
GrB_Info info
) ;
void gb_find_dot // find 1st and 2nd dot ('.') in a string
(
int32_t position [2], // positions of one or two dots
const char *s // null-terminated string to search
) ;
GrB_Type gb_string_to_type // return the GrB_Type from a string
(
const char *classname
) ;
GrB_UnaryOp gb_mxstring_to_unop // return unary operator from a string
(
const mxArray *mxstring, // built-in string
const GrB_Type default_type // default type if not in the string
) ;
GrB_UnaryOp gb_string_to_unop // return unary operator from a string
(
char *opstring, // string defining the operator
const GrB_Type default_type // default type if not in the string
) ;
GrB_UnaryOp gb_string_and_type_to_unop // return op from string and type
(
const char *op_name, // name of the operator, as a string
const GrB_Type type, // type of the x,y inputs to the operator
const bool type_not_given // true if no type present in the string
) ;
GrB_BinaryOp gb_mxstring_to_binop // return binary operator from a string
(
const mxArray *mxstring, // built-in string
const GrB_Type atype, // type of A
const GrB_Type btype // type of B
) ;
void gb_mxstring_to_binop_or_idxunop // binop or idxunop from a string
(
const mxArray *mxstring, // built-in string
const GrB_Type atype, // type of A
const GrB_Type btype, // type of B
// output:
GrB_BinaryOp *op2, // binary op
GrB_IndexUnaryOp *idxunop, // idxunop
int64_t *ithunk // thunk for idxunop
) ;
GrB_BinaryOp gb_string_to_binop_or_idxunop
(
char *opstring, // string defining the operator
const GrB_Type atype, // type of A
const GrB_Type btype, // type of B
GrB_IndexUnaryOp *idxunop, // idxunop from the string
int64_t *ithunk // thunk for idxunop
) ;
GrB_BinaryOp gb_string_and_type_to_binop_or_idxunop
(
const char *op_name, // name of the operator, as a string
const GrB_Type type, // type of the x,y inputs to the operator
const bool type_not_given, // true if no type present in the string
GrB_IndexUnaryOp *idxunop, // idxunop from the string
int64_t *ithunk // thunk for idxunop
) ;
GrB_Semiring gb_mxstring_to_semiring // return semiring from a string
(
const mxArray *mxstring, // built-in string
const GrB_Type atype, // type of A
const GrB_Type btype // type of B
) ;
GrB_Semiring gb_string_to_semiring // return a semiring from a string
(
char *semiring_string, // string defining the semiring
const GrB_Type atype, // type of A
const GrB_Type btype // type of B
) ;
GrB_Semiring gb_semiring // built-in semiring, or NULL if error
(
const GrB_BinaryOp add, // add operator
const GrB_BinaryOp mult // multiply operator
) ;
GrB_Descriptor gb_mxarray_to_descriptor // new descriptor, or NULL if none
(
const mxArray *desc_builtin,// built-in struct with possible descriptor
kind_enum_t *kind, // GrB, sparse, or full
GxB_Format_Value *fmt, // by row or by col
int *sparsity, // hypersparse/sparse/bitmap/full
base_enum_t *base // 0-based int, 1-based int, or 1-based double
) ;
GrB_Matrix gb_expand_to_full // C = full (A), and typecast
(
const GrB_Matrix A, // input matrix to expand to full
GrB_Type type, // type of C, if NULL use the type of A
GxB_Format_Value fmt, // format of C
GrB_Matrix id // identity value, use zero if NULL
) ;
mxArray *gb_export_to_mxstruct // return exported built-in struct G
(
GrB_Matrix *A_handle // matrix to export; freed on output
) ;
mxArray *gb_export_to_mxsparse // return exported built-in sparse matrix S
(
GrB_Matrix *A_handle // matrix to export; freed on output
) ;
mxArray *gb_export_to_mxfull // return exported built-in full matrix F
(
void **X_handle, // pointer to array to export
const GrB_Index nrows, // dimensions of F
const GrB_Index ncols,
GrB_Type type // type of the array
) ;
mxArray *gb_export // return the exported built-in matrix or struct
(
GrB_Matrix *C_handle, // GrB_Matrix to export and free
kind_enum_t kind // GrB, sparse, or full
) ;
void gb_string_to_selectop
(
// outputs: one of the outputs is non-NULL and the other NULL
GrB_IndexUnaryOp *idxunop, // GrB_IndexUnaryOp, if found
GxB_SelectOp *selop, // GxB_SelectOp if found
bool *thunk_required, // true if op requires a thunk scalar
bool *op_is_positional, // true if op is positional
// input/output:
int64_t *ithunk,
// inputs:
char *opstring, // string defining the operator
const GrB_Type atype // type of A, or NULL if not present
) ;
void gb_mxstring_to_selectop
(
// outputs: one of the outputs is non-NULL and the other NULL
GrB_IndexUnaryOp *idxunop, // GrB_IndexUnaryOp, if found
GxB_SelectOp *selop, // GxB_SelectOp if found
bool *thunk_required, // true if op requires a thunk scalar
bool *op_is_positional, // true if op is positional
// input/output:
int64_t *ithunk,
// inputs:
const mxArray *mxstring, // built-in string
const GrB_Type atype // type of A, or NULL if not present
) ;
bool gb_mxarray_is_scalar // true if built-in array is a scalar
(
const mxArray *S
) ;
uint64_t gb_mxget_uint64_scalar // return uint64 value of a MATLAB scalar
(
const mxArray *mxscalar, // MATLAB scalar to extract
char *name // name of the scalar
) ;
bool gb_mxarray_is_empty // true if built-in array is NULL, or 2D and 0-by-0
(
const mxArray *S
) ;
void gb_mxfree // mxFree wrapper
(
void **p_handle // handle to pointer to be freed
) ;
int64_t *gb_mxarray_to_list // return List of integers
(
const mxArray *mxList, // list to extract
base_enum_t base, // input is zero-based or one-based
bool *allocated, // true if output list was allocated
int64_t *len, // length of list
int64_t *List_max // max entry in the list, if computed
) ;
GrB_Index *gb_mxcell_to_index // return index list I
(
const mxArray *I_cell, // built-in cell array
base_enum_t base, // I is one-based or zero-based
const GrB_Index n, // dimension of matrix being indexed
bool *I_allocated, // true if output array I is allocated
GrB_Index *ni, // length (I)
int64_t *I_max // max (I) is computed if I_max is not NULL
) ;
GrB_BinaryOp gb_first_binop // return GrB_FIRST_[type] operator
(
const GrB_Type type
) ;
GrB_Monoid gb_binop_to_monoid // return monoid from a binary op
(
GrB_BinaryOp op
) ;
GrB_Monoid gb_string_to_monoid // return monoid from a string
(
char *opstring, // string defining the operator
const GrB_Type type // default type if not in the string
) ;
GrB_Monoid gb_mxstring_to_monoid // return monoid from a string
(
const mxArray *mxstring, // built-in string
const GrB_Type type // default type if not in the string
) ;
bool gb_mxstring_to_format // true if a valid format is found
(
// input
const mxArray *mxformat, // built-in string, 'by row' or 'by col'
// output
GxB_Format_Value *fmt,
int *sparsity
) ;
void gb_assign // gbassign or gbsubassign mexFunctions
(
int nargout, // # output arguments for mexFunction
mxArray *pargout [ ], // output arguments for mexFunction
int nargin, // # input arguments for mexFunction
const mxArray *pargin [ ], // input arguments for mexFunction
bool do_subassign, // true: do subassign, false: do assign
const char *usage // usage string to print if error
) ;
GrB_Matrix gb_by_col // return the matrix by column
(
GrB_Matrix *A_copy_handle, // copy made of A, stored by column, or NULL
GrB_Matrix A_input // input matrix, by row or column
) ;
GxB_Format_Value gb_default_format // GxB_BY_ROW or GxB_BY_COL
(
GrB_Index nrows, // row vectors are stored by row
GrB_Index ncols // column vectors are stored by column
) ;
bool gb_is_vector // true if A is a row or column vector
(
GrB_Matrix A // GrB_Matrix to query
) ;
GxB_Format_Value gb_get_format // GxB_BY_ROW or GxB_BY_COL
(
GrB_Index cnrows, // C is cnrows-by-cncols
GrB_Index cncols,
GrB_Matrix A, // may be NULL
GrB_Matrix B, // may be NULL
GxB_Format_Value fmt_descriptor // may be GxB_NO_FORMAT
) ;
GxB_Format_Value gb_get_sparsity // 1 to 15
(
GrB_Matrix A, // may be NULL
GrB_Matrix B, // may be NULL
int sparsity_default // may be 0
) ;
bool gb_is_equal // true if A == B, false if A ~= B
(
GrB_Matrix A,
GrB_Matrix B
) ;
bool gb_is_all // true if op (A,B) is all true, false otherwise
(
GrB_Matrix A,
GrB_Matrix B,
GrB_BinaryOp op
) ;
void gb_isnan32 (bool *z, const float *aij,
int64_t i, int64_t j, const void *thunk) ;
void gb_isnan64 (bool *z, const double *aij,
int64_t i, int64_t j, const void *thunk) ;
void gb_isnotnan32 (bool *z, const float *aij,
int64_t i, int64_t j, const void *thunk) ;
void gb_isnotnan64 (bool *z, const double *aij,
int64_t i, int64_t j, const void *thunk) ;
void gb_isnanfc32 (bool *z, const GxB_FC32_t *x,
int64_t i, int64_t j, const void *thunk) ;
void gb_isnanfc64 (bool *z, const GxB_FC64_t *aij,
int64_t i, int64_t j, const void *thunk) ;
void gb_isnotnanfc32 (bool *z, const GxB_FC32_t *aij,
int64_t i, int64_t j, const void *thunk) ;
void gb_isnotnanfc64 (bool *z, const GxB_FC64_t *aij,
int64_t i, int64_t j, const void *thunk) ;
void gb_get_mxargs
(
// input:
int nargin, // # input arguments for mexFunction
const mxArray *pargin [ ], // input arguments for mexFunction
const char *usage, // usage to print, if too many args appear
// output:
mxArray *Matrix [4], // matrix arguments
int *nmatrices, // # of matrix arguments
mxArray *String [2], // string arguments
int *nstrings, // # of string arguments
mxArray *Cell [2], // cell array arguments
int *ncells, // # of cell array arguments
GrB_Descriptor *desc, // last argument is always the descriptor
base_enum_t *base, // desc.base
kind_enum_t *kind, // desc.kind
GxB_Format_Value *fmt, // desc.format : by row or by col
int *sparsity // desc.format : hypersparse/sparse/bitmap/full
) ;
int64_t gb_norm_kind (const mxArray *arg) ;
double gb_norm // compute norm (A,kind)
(
GrB_Matrix A,
int64_t norm_kind // 0, 1, 2, INT64_MAX, or INT64_MIN
) ;
GrB_Type gb_default_type // return the default type to use
(
const GrB_Type atype, // type of the A matrix
const GrB_Type btype // type of the B matrix
) ;
bool gb_is_integer (const GrB_Type type) ;
bool gb_is_float (const GrB_Type type) ;
GrB_UnaryOp gb_round_op (const GrB_Type type) ;
mxArray *gb_mxclass_to_mxstring (mxClassID class, bool is_complex) ;
#endif
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