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# GraphBLAS/GraphBLAS: MATLAB/Octave interface for SuiteSparse:GraphBLAS
SuiteSparse:GraphBLAS, Timothy A. Davis, (c) 2017-2022, All Rights Reserved.
SPDX-License-Identifier: Apache-2.0
The @GrB class provides an easy-to-use interface to SuiteSparse:GraphBLAS.
To install it for use in MATLAB/Octave, first compile the GraphBLAS library,
-lgraphblas (for Octave) or -lgraphblas_matlab (for MATLAB). See the
instructions in the top-level GraphBLAS folder for details. Be sure to use
OpenMP for best performance. The default installation process places the
GraphBLAS library in /usr/local/lib. If you do not have root access and cannot
install GraphBLAS into /usr/local/lib, then follow the instructions below to
modify your library path, but instead of /usr/local/lib, use
/home/me/SuiteSparse/GraphBLAS/build, where "/home/me/SuiteSparse/GraphBLAS" is
where you placed your copy of GraphBLAS.
MATLAB (not Octave) the gbmake script will link against the library
-lgraphblas_matlab, not -lgraphblas, because that version of MATLAB includes
its own version of SuiteSparse:GraphBLAS (v3.3.3, an earlier one). To avoid a
name conflict, you must compile the -lgraphblas_matlab library in
/home/me/SuiteSparse/GraphBLAS/GraphBLAS/build.
MATLAB/Octave needs to know where to find the compiled GraphBLAS library. On
Linux/Unix, if you are using the bash or korn shells, make sure that add the
following to your login profile (typically .bash_profile for bash, or .profile
for korn):
LD_LIBRARY_PATH=$LD_LIBRARY_PATH:/usr/local/lib
export LD_LIBRARY_PATH
On Linux/Unix with the csh, tcsh or related shells, use:
setenv PATH $PATH\:/usr/local/lib
On the Mac, use the following:
DYLD_LIBRARY_PATH=$DYLD_LIBRARY_PATH:/usr/local/lib
export DYLD_LIBRARY_PATH
If you don't have system priveledges to change /usr/local/lib, then add the
build folder to your LD_LIBRARY_PATH instead, either. For Octave, use
/home/me/SuiteSparse/GraphBLAS/build for libgraphblas.so,
For MATLAB, use: /home/me/SuiteSparse/GraphBLAS/GraphBLAS/build for
libgraphblas_matlab.so.
On Windows 10, on the Search bar type env and hit enter; (or you can
right-click My Computer or This PC and select Properties, and then select
Advanced System Settings). Select "Edit the system environment variables",
then "Environment Variables". Under "System Variables" select "Path" and click
"Edit". These "New" to add a path and then "Browse". Browse to the folder
(for example: C:/Users/me/Documents/SuiteSparse/GraphBLAS/build/Release) and
add it to your path. For MATLAB, you must use the
libgraphblas_matlab.dll, in:
/User/me/SuiteSparse/GraphBLAS/GraphBLAS/build/Release instead. Then close the
editor, sign out of Windows and sign back in again.
Next, start MATLAB/Octave and go to this GraphBLAS/GraphBLAS folder. Type
addpath (pwd)
to add the GraphBLAS interface to your path. Then do
savepath
Or, if that function is not allowed because of file permissions, add this
command to your startup.m file:
% add the MATLAB/Octave interface to the MATLAB/Octave path
addpath ('/home/me/SuiteSparse/GraphBLAS/GraphBLAS') :
where the path /home/me/SuiteSparse/GraphBLAS/GraphBLAS is the full path to
this folder.
The name "GraphBLAS/GraphBLAS" is used for this folder so that this can be done
in MATLAB/Octave:
help GraphBLAS
To get additional help, type:
methods GrB
help GrB
Next, go to the GraphBLAS/GraphBLAS/@GrB/private folder and compile the
MATLAB/Octave mexFunctions. Assuming your working directory is
GraphBLAS/GraphBLAS (where this README.md file is located), do the following:
cd @GrB/private
gbmake
To run the demos, go to the GraphBLAS/GraphBLAS/demo folder and type:
gbdemo
gbdemo2
The output of these demos on a Dell XPS 13 laptop and an NVIDIA DGX Station can
also be found in GraphBLAS/GraphBLAS/demo/html, in both PDF and HTML formats.
To test your installation, go to GraphBLAS/GraphBLAS/test and type:
gbtest
If everything is successful, it should report 'gbtest: all tests passed'. Note
that gbtest tests all features of the MATLAB/Octave interface to
SuiteSparse/GraphBLAS, including error handling, so you can expect to see error
messages during the test. This is expected.
# FUTURE: Not yet supported for GrB matrices in MATLAB/Octave:
linear indexing, except for C=A(:) to index the whole matrix A
or C(:)=A to index the whole matrix C.
2nd output for [x,i] = max (...) and [x,i] = min (...):
use GrB.argmin and GrB.argmax instead.
'includenan' for min and max
min and max for complex matrices
singleton expansion
saturating element-wise binary and unary operators for integers.
See also the discussion in the User Guide.
These functions are supported, but are not yet as fast as they could be:
eps, ishermitian, issymmetric, spfun.
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