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function cholmod_make (metis_path)
%CHOLMOD_MAKE compiles the CHOLMOD mexFunctions
%
% Example:
% cholmod_make
%
% CHOLMOD relies on AMD and COLAMD, and optionally CCOLAMD, CAMD, and METIS.
% You must type the cholmod_make command while in the CHOLMOD/MATLAB directory.
%
% See also analyze, bisect, chol2, cholmod2, etree2, lchol, ldlchol, ldlsolve,
% ldlupdate, metis, spsym, nesdis, septree, resymbol, sdmult, sparse2,
% symbfact2, mread, mwrite, ldlrowmod
% Copyright 2006-2015, Timothy A. Davis, http://www.suitesparse.com
details = 0 ; % 1 if details of each command are to be printed
v = version ;
try
% ispc does not appear in MATLAB 5.3
pc = ispc ;
mac = ismac ;
catch %#ok
% if ispc fails, assume we are on a Windows PC if it's not unix
pc = ~isunix ;
mac = 0 ;
end
flags = '' ;
is64 = ~isempty (strfind (computer, '64')) ;
if (is64)
% 64-bit MATLAB
flags = '-largeArrayDims' ;
end
% MATLAB 8.3.0 now has a -silent option to keep 'mex' from burbling too much
if (~verLessThan ('matlab', '8.3.0'))
flags = ['-silent ' flags] ;
end
include = '-I. -I../../AMD/Include -I../../COLAMD/Include -I../../CCOLAMD/Include -I../../CAMD/Include -I../Include -I../../SuiteSparse_config' ;
if (verLessThan ('matlab', '7.0'))
% do not attempt to compile CHOLMOD with large file support
include = [include ' -DNLARGEFILE'] ;
elseif (~pc)
% Linux/Unix require these flags for large file support
include = [include ' -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE'] ;
end
if (verLessThan ('matlab', '6.5'))
% logical class does not exist in MATLAB 6.1 or earlie
include = [include ' -DMATLAB6p1_OR_EARLIER'] ;
end
% Determine if METIS is available
if (nargin < 1)
metis_path = '../../metis-5.1.0' ;
end
have_metis = exist (metis_path, 'dir') ;
if (have_metis)
fprintf ('Compiling CHOLMOD with METIS 5.1.0 for MATLAB Version %s\n', v) ;
include = [include ' -I' metis_path '/include'] ;
include = [include ' -I' metis_path '/GKlib'] ;
include = [include ' -I' metis_path '/libmetis'] ;
else
fprintf ('Compiling CHOLMOD without METIS for MATLAB Version %s\n', v) ;
include = ['-DNPARTITION ' include] ;
end
%---------------------------------------------------------------------------
% BLAS option
%---------------------------------------------------------------------------
% This is exceedingly ugly. The MATLAB mex command needs to be told where to
% fine the LAPACK and BLAS libraries, which is a real portability nightmare.
if (pc)
if (verLessThan ('matlab', '7.5'))
lapack = 'libmwlapack.lib' ;
elseif (verLessThan ('matlab', '9.5'))
lapack = 'libmwlapack.lib libmwblas.lib' ;
else
lapack = '-lmwlapack -lmwblas' ;
end
else
if (verLessThan ('matlab', '7.5'))
lapack = '-lmwlapack' ;
else
lapack = '-lmwlapack -lmwblas' ;
end
end
if (is64 && ~verLessThan ('matlab', '7.8'))
% versions 7.8 and later on 64-bit platforms use a 64-bit BLAS
fprintf ('with 64-bit BLAS\n') ;
flags = [flags ' -DBLAS64'] ;
end
if (~(pc || mac))
% for POSIX timing routine
lapack = [lapack ' -lrt'] ;
end
%-------------------------------------------------------------------------------
config_src = { '../../SuiteSparse_config/SuiteSparse_config' } ;
ordering_src = { ...
'../../AMD/Source/amd_1', ...
'../../AMD/Source/amd_2', ...
'../../AMD/Source/amd_aat', ...
'../../AMD/Source/amd_control', ...
'../../AMD/Source/amd_defaults', ...
'../../AMD/Source/amd_dump', ...
'../../AMD/Source/amd_global', ...
'../../AMD/Source/amd_info', ...
'../../AMD/Source/amd_order', ...
'../../AMD/Source/amd_postorder', ...
'../../AMD/Source/amd_post_tree', ...
'../../AMD/Source/amd_preprocess', ...
'../../AMD/Source/amd_valid', ...
'../../CAMD/Source/camd_1', ...
'../../CAMD/Source/camd_2', ...
'../../CAMD/Source/camd_aat', ...
'../../CAMD/Source/camd_control', ...
'../../CAMD/Source/camd_defaults', ...
'../../CAMD/Source/camd_dump', ...
'../../CAMD/Source/camd_global', ...
'../../CAMD/Source/camd_info', ...
'../../CAMD/Source/camd_order', ...
'../../CAMD/Source/camd_postorder', ...
'../../CAMD/Source/camd_preprocess', ...
'../../CAMD/Source/camd_valid', ...
'../../COLAMD/Source/colamd', ...
'../../CCOLAMD/Source/ccolamd' } ;
if (have_metis)
metis_src = {
'GKlib/b64', ...
'GKlib/blas', ...
'GKlib/csr', ...
'GKlib/error', ...
'GKlib/evaluate', ...
'GKlib/fkvkselect', ...
'GKlib/fs', ...
'GKlib/getopt', ...
'GKlib/gkregex', ...
'GKlib/graph', ...
'GKlib/htable', ...
'GKlib/io', ...
'GKlib/itemsets', ...
'GKlib/mcore', ...
'GKlib/memory', ...
'GKlib/omp', ...
'GKlib/pdb', ...
'GKlib/pqueue', ...
'GKlib/random', ...
'GKlib/rw', ...
'GKlib/seq', ...
'GKlib/sort', ...
'GKlib/string', ...
'GKlib/timers', ...
'GKlib/tokenizer', ...
'GKlib/util', ...
'libmetis/auxapi', ...
'libmetis/balance', ...
'libmetis/bucketsort', ...
'libmetis/checkgraph', ...
'libmetis/coarsen', ...
'libmetis/compress', ...
'libmetis/contig', ...
'libmetis/debug', ...
'libmetis/fm', ...
'libmetis/fortran', ...
'libmetis/frename', ...
'libmetis/gklib', ...
'libmetis/graph', ...
'libmetis/initpart', ...
'libmetis/kmetis', ...
'libmetis/kwayfm', ...
'libmetis/kwayrefine', ...
'libmetis/mcutil', ...
'libmetis/mesh', ...
'libmetis/meshpart', ...
'libmetis/minconn', ...
'libmetis/mincover', ...
'libmetis/mmd', ...
'libmetis/ometis', ...
'libmetis/options', ...
'libmetis/parmetis', ...
'libmetis/pmetis', ...
'libmetis/refine', ...
'libmetis/separator', ...
'libmetis/sfm', ...
'libmetis/srefine', ...
'libmetis/stat', ...
'libmetis/timing', ...
'libmetis/util', ...
'libmetis/wspace', ...
} ;
for i = 1:length (metis_src)
metis_src {i} = [metis_path '/' metis_src{i}] ;
end
end
cholmod_matlab = { 'cholmod_matlab' } ;
cholmod_src = {
'../Core/cholmod_aat', ...
'../Core/cholmod_add', ...
'../Core/cholmod_band', ...
'../Core/cholmod_change_factor', ...
'../Core/cholmod_common', ...
'../Core/cholmod_complex', ...
'../Core/cholmod_copy', ...
'../Core/cholmod_dense', ...
'../Core/cholmod_error', ...
'../Core/cholmod_factor', ...
'../Core/cholmod_memory', ...
'../Core/cholmod_sparse', ...
'../Core/cholmod_transpose', ...
'../Core/cholmod_triplet', ...
'../Check/cholmod_check', ...
'../Check/cholmod_read', ...
'../Check/cholmod_write', ...
'../Cholesky/cholmod_amd', ...
'../Cholesky/cholmod_analyze', ...
'../Cholesky/cholmod_colamd', ...
'../Cholesky/cholmod_etree', ...
'../Cholesky/cholmod_factorize', ...
'../Cholesky/cholmod_postorder', ...
'../Cholesky/cholmod_rcond', ...
'../Cholesky/cholmod_resymbol', ...
'../Cholesky/cholmod_rowcolcounts', ...
'../Cholesky/cholmod_rowfac', ...
'../Cholesky/cholmod_solve', ...
'../Cholesky/cholmod_spsolve', ...
'../MatrixOps/cholmod_drop', ...
'../MatrixOps/cholmod_horzcat', ...
'../MatrixOps/cholmod_norm', ...
'../MatrixOps/cholmod_scale', ...
'../MatrixOps/cholmod_sdmult', ...
'../MatrixOps/cholmod_ssmult', ...
'../MatrixOps/cholmod_submatrix', ...
'../MatrixOps/cholmod_vertcat', ...
'../MatrixOps/cholmod_symmetry', ...
'../Modify/cholmod_rowadd', ...
'../Modify/cholmod_rowdel', ...
'../Modify/cholmod_updown', ...
'../Supernodal/cholmod_super_numeric', ...
'../Supernodal/cholmod_super_solve', ...
'../Supernodal/cholmod_super_symbolic', ...
'../Partition/cholmod_ccolamd', ...
'../Partition/cholmod_csymamd', ...
'../Partition/cholmod_camd', ...
'../Partition/cholmod_metis', ...
'../Partition/cholmod_nesdis' } ;
cholmod_mex_src = { ...
'analyze', ...
'bisect', ...
'chol2', ...
'cholmod2', ...
'etree2', ...
'lchol', ...
'ldlchol', ...
'ldlsolve', ...
'ldlupdate', ...
'ldlrowmod', ...
'metis', ...
'spsym', ...
'nesdis', ...
'septree', ...
'resymbol', ...
'sdmult', ...
'sparse2', ...
'symbfact2', ...
'mread', ...
'mwrite', ...
'lxbpattern', 'lsubsolve' } ; % <=== these 2 are just for testing
if (pc)
% Windows does not have drand48 and srand48, required by METIS. Use
% drand48 and srand48 in CHOLMOD/MATLAB/Windows/rand48.c instead.
% Also provide Windows with an empty <strings.h> include file.
obj_extension = '.obj' ;
cholmod_matlab = [cholmod_matlab {'Windows/rand48'}] ;
include = [include ' -IWindows'] ;
else
obj_extension = '.o' ;
end
% compile each library source file
obj = '' ;
source = [ordering_src config_src cholmod_src cholmod_matlab] ;
if (have_metis)
source = [metis_src source] ;
end
kk = 0 ;
for f = source
ff = f {1} ;
if (isequal (ff, [metis_path '/GKlib/util']))
% special case, since a file with the same name also exists in libmetis
copyfile ([ff '.c'], 'GKlib_util.c', 'f') ;
ff = 'GKlib_util' ;
o = 'GKlib_util' ;
elseif (isequal (ff, [metis_path '/GKlib/graph']))
% special case, since a file with the same name also exist in libmetis
copyfile ([ff '.c'], 'GKlib_graph.c', 'f') ;
ff = 'GKlib_graph' ;
o = 'GKlib_graph' ;
else
slash = strfind (ff, '/') ;
if (isempty (slash))
slash = 1 ;
else
slash = slash (end) + 1 ;
end
o = ff (slash:end) ;
end
% fprintf ('%s\n', o) ;
o = [o obj_extension] ;
obj = [obj ' ' o] ; %#ok
s = sprintf ('mex %s -DDLONG -O %s -c %s.c', flags, include, ff) ;
kk = do_cmd (s, kk, details) ;
end
% compile each mexFunction
for f = cholmod_mex_src
s = sprintf ('mex %s -DDLONG -O %s %s.c', flags, include, f{1}) ;
s = [s obj ' ' lapack] ; %#ok
kk = do_cmd (s, kk, details) ;
end
% clean up
s = ['delete ' obj] ;
do_cmd (s, kk, details) ;
fprintf ('\nCHOLMOD successfully compiled\n') ;
% remove the renamed METIS files, if they exist
if (exist ('GKlib_util.c', 'file'))
delete ('GKlib_util.c') ;
end
if (exist ('GKlib_graph.c', 'file'))
delete ('GKlib_graph.c') ;
end
%------------------------------------------------------------------------------
function kk = do_cmd (s, kk, details)
%DO_CMD: evaluate a command, and either print it or print a "."
if (details)
fprintf ('%s\n', s) ;
else
if (mod (kk, 60) == 0)
fprintf ('\n') ;
end
kk = kk + 1 ;
fprintf ('.') ;
end
eval (s) ;
|
