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function ccolamd_test
%CCOLAMD_TEST extensive test of ccolamd and csymamd
%
% Example:
% ccolamd_test
%
% See also csymamd, ccolamd, ccolamd_make.
% CCOLAMD, Copyright (c) 2005-2022, Univ. of Florida, All Rights Reserved.
% Authors: Timothy A. Davis, Sivasankaran Rajamanickam, and Stefan Larimore.
% SPDX-License-Identifier: BSD-3-clause
help ccolamd_test
global ccolamd_default_knobs csymamd_default_knobs
ccolamd_default_knobs = [0 10 10 1 0] ;
csymamd_default_knobs = [10 1 0] ;
fprintf ('Compiling ccolamd, csymamd, and test mexFunctions.\n') ;
ccolamd_make ;
d = '' ;
if (~isempty (strfind (computer, '64')))
d = '-largeArrayDims' ;
end
cmd = sprintf ( ...
'mex -O %s -I../../SuiteSparse_config -I../Include ', d) ;
src = '../Source/ccolamd_l.c ../../SuiteSparse_config/SuiteSparse_config.c' ;
if (~(ispc || ismac))
% for POSIX timing routine
src = [src ' -lrt'] ;
end
eval ([cmd 'ccolamdtestmex.c ' src]) ;
eval ([cmd 'csymamdtestmex.c ' src]) ;
fprintf ('Done compiling.\n') ;
fprintf ('\nThe following codes will be tested:\n') ;
which ccolamd
which csymamd
which ccolamdtestmex
which csymamdtestmex
fprintf ('\nStarting the tests. Please be patient.\n') ;
h = waitbar (0, 'COLAMD test') ;
rand ('state', 0) ;
randn ('state', 0) ;
A = sprandn (500,500,0.4) ;
p = ccolamd (A, [0 10 10 1 1]) ; check_perm (p, A) ;
p = ccolamd (A, [1 2 7 1 1]) ; check_perm (p, A) ;
p = ccolamd (A, [1 2 10 0 1]) ; check_perm (p, A) ;
p = ccolamd (A, [9 2 3 1 1]) ; check_perm (p, A) ;
p = csymamd (A, [10 1 1]) ; check_perm (p, A) ;
p = csymamd (A, [4 1 1]) ; check_perm (p, A) ;
p = csymamd (A, [9 0 1]) ; check_perm (p, A) ;
fprintf ('Null matrices') ;
A = zeros (0,0) ;
A = sparse (A) ;
p = ccolamd (A) ;
check_perm (p, A) ;
p = csymamd (A) ;
check_perm (p, A) ;
A = zeros (0, 100) ;
A = sparse (A) ;
p = ccolamd (A) ;
check_perm (p, A) ;
A = zeros (100, 0) ;
A = sparse (A) ;
p = ccolamd (A) ;
check_perm (p, A) ;
fprintf (' OK\n') ;
fprintf ('Matrices with a few dense row/cols\n') ;
for trial = 1:20
waitbar (trial/20, h, 'CCOLAMD: dense rows/cols') ;
% random square unsymmetric matrix
A = rand_matrix (1000, 1000, 1, 10, 20) ;
[m n] = size (A) ;
cmember = irand (min (trial,n), n) ;
for tol = [0:.1:2 3:20 1e6]
B = A + A' ;
fprintf ('.') ;
p = ccolamd (A, [ ]) ; check_perm (p, A) ;
p = ccolamd (A, [1 tol tol 1]) ; check_perm (p, A) ;
p = ccolamd (A, [0 tol tol 1]) ; check_perm (p, A) ;
p = ccolamd (A, [1 tol tol 0]) ; check_perm (p, A) ;
p = ccolamd (A, [0 tol tol 1]) ; check_perm (p, A) ;
p = csymamd (A, [tol 1]) ; check_perm (p, A) ;
p = csymamd (A, tol) ; check_perm (p, A) ;
p = csymamd (A, [ ]) ; check_perm (p, A) ;
p = csymamd (B, [tol 0]) ; check_perm (p, A) ;
p = ccolamd (A, [0 tol -1 1]) ; check_perm (p, A) ;
p = ccolamd (A, [0 -1 tol 1]) ; check_perm (p, A) ;
% check with non-null cmember
p = ccolamd (A, [ ], cmember) ; check_perm (p, A) ;
p = ccolamd (A, [1 tol tol 1], cmember) ; check_perm (p, A) ;
p = ccolamd (A, [0 tol tol 1], cmember) ; check_perm (p, A) ;
p = ccolamd (A, [1 tol tol 0], cmember) ; check_perm (p, A) ;
p = ccolamd (A, [0 tol tol 1], cmember) ; check_perm (p, A) ;
p = csymamd (A, [tol 1], cmember) ; check_perm (p, A) ;
p = csymamd (A, tol, cmember) ; check_perm (p, A) ;
p = csymamd (A, [ ], cmember) ; check_perm (p, A) ;
p = csymamd (B, [tol 0], cmember) ; check_perm (p, A) ;
p = ccolamd (A, [0 tol -1 1], cmember) ; check_perm (p, A) ;
p = ccolamd (A, [0 -1 tol 1], cmember) ; check_perm (p, A) ;
p = ccolamd (A, [ ], [ ]) ; check_perm (p, A) ;
p = ccolamd (A, [1 tol tol 1], [ ]) ; check_perm (p, A) ;
p = ccolamd (A, [0 tol tol 1], [ ]) ; check_perm (p, A) ;
p = ccolamd (A, [1 tol tol 0], [ ]) ; check_perm (p, A) ;
p = ccolamd (A, [0 tol tol 1], [ ]) ; check_perm (p, A) ;
p = csymamd (A, [tol 1], [ ]) ; check_perm (p, A) ;
p = csymamd (A, tol, [ ]) ; check_perm (p, A) ;
p = csymamd (A, [ ], [ ]) ; check_perm (p, A) ;
p = csymamd (B, [tol 0], [ ]) ; check_perm (p, A) ;
p = ccolamd (A, [0 tol -1 1], [ ]) ; check_perm (p, A) ;
p = ccolamd (A, [0 -1 tol 1], [ ]) ; check_perm (p, A) ;
end
end
fprintf (' OK\n') ;
fprintf ('General matrices\n') ;
for trial = 1:400
waitbar (trial/400, h, 'CCOLAMD: with dense rows/cols') ;
fprintf ('.') ;
% matrix of random mtype
mtype = irand (3) ;
A = rand_matrix (2000, 2000, mtype, 0, 0) ;
p = ccolamd (A) ;
check_perm (p, A) ;
if (mtype == 3)
p = csymamd (A) ;
check_perm (p, A) ;
end
end
fprintf (' OK\n') ;
fprintf ('Test error handling with invalid inputs\n') ;
% Check different erroneous input.
for trial = 1:30
waitbar (trial/30, h, 'CCOLAMD: error handling') ;
A = rand_matrix (1000, 1000, 2, 0, 0) ;
for err = 1:13
fprintf ('.') ;
p = Tcolamd (A, [ccolamd_default_knobs 1 err], [ ]) ;
if (p(1) ~= -1) %#ok
check_perm (p, A) ;
end
if (err == 1)
% check different (valid) input args to ccolamd
p = Acolamd (A) ;
p2 = Acolamd (A, [ccolamd_default_knobs 0 0]) ;
if (any (p ~= p2))
error ('ccolamd: mismatch 1!') ;
end
end
B = A'*A ;
p = Tsymamd (B, [-1 1 0 err], [ ]) ;
if (p(1) ~= -1) %#ok
check_perm (p, A) ;
end
if (err == 1)
% check different (valid) input args to csymamd
p = Asymamd (B) ;
check_perm (p, A) ;
p2 = Asymamd (B, [csymamd_default_knobs 0]) ;
if (any (p ~= p2))
error ('symamd: mismatch 1!') ;
end
end
end
end
fprintf (' OK\n') ;
fprintf ('Matrices with a few empty columns\n') ;
for trial = 1:400
waitbar (trial/400, h, 'CCOLAMD: with empty rows/cols') ;
% some are square, some are rectangular
n = 0 ;
while (n < 5)
A = rand_matrix (1000, 1000, irand (2), 0, 0) ;
[m n] = size (A) ;
end
% Add 5 null columns at random locations.
null_col = randperm (n) ;
A (:, null_col) = 0 ;
% Order the matrix and make sure that the null columns are ordered last.
p = ccolamd (A, [1 1e6 1e6 0]) ;
check_perm (p, A) ;
% find all null columns in A
null_col = find (sum (spones (A), 1) == 0) ;
nnull = length (null_col) ;
if (any (null_col ~= p ((n-nnull+1):n)))
error ('ccolamd: Null cols are not ordered last in natural order') ;
end
end
fprintf (' OK\n') ;
fprintf ('Matrices with a few empty rows and columns\n') ;
for trial = 1:400
waitbar (trial/400, h, 'CCOLAMD: with empty rows/cols') ;
fprintf ('.') ;
% symmetric matrices
n = 0 ;
while (n < 5)
A = rand_matrix (1000, 1000, 3, 0, 0) ;
[m n] = size (A) ;
end
% Add 5 null columns and rows at random locations.
null_col = randperm (n) ;
A (:, null_col) = 0 ;
A (null_col, :) = 0 ;
% Order the matrix and make sure that the null rows/cols are ordered last.
p = csymamd (A, -1) ;
check_perm (p, A) ;
% find all null rows/columns in A
Alo = tril (A, -1) ;
null_col = ...
find ((sum (spones (Alo), 1) == 0) & (sum (spones (Alo), 2) == 0)') ;
nnull = length (null_col) ;
if (any (null_col ~= p ((n-nnull+1):n)))
error ('csymamd: Null cols are not ordered last in natural order') ;
end
end
fprintf (' OK\n') ;
fprintf ('Matrices with a few empty rows\n') ;
% Test matrices with null rows inserted.
for trial = 1:400
waitbar (trial/400, h, 'CCOLAMD: with null rows') ;
fprintf ('.') ;
m = 0 ;
while (m < 5)
A = rand_matrix (1000, 1000, 2, 0, 0) ;
m = size (A,1) ;
end
% Add 5 null rows at random locations.
null_row = randperm (m) ;
null_row = sort (null_row (1:5)) ;
A (null_row, :) = 0 ;
p = ccolamd (A) ;
check_perm (p, A) ;
end
fprintf (' OK\n') ;
fprintf ('\nccolamd and csymamd: all tests passed\n\n') ;
close (h) ;
%-------------------------------------------------------------------------------
function p = Acolamd (S, knobs)
% Acolamd: compare ccolamd and Tcolamd results
global ccolamd_default_knobs
if (nargin < 2)
p = ccolamd (S) ;
p1 = Tcolamd (S, [ccolamd_default_knobs 0 0], [ ]) ;
else
p = ccolamd (S, knobs) ;
p1 = Tcolamd (S, knobs, [ ]) ;
end
check_perm (p, S) ;
check_perm (p1, S) ;
if (any (p1 ~= p))
narg = nargin ;
if (nargin == 2)
save bad S narg knobs
else
save bad S narg
end
error ('Acolamd mismatch!') ;
end
%-------------------------------------------------------------------------------
function p = Asymamd (S, knobs)
% Asymamd: compare csymamd and Tsymamd results
global csymamd_default_knobs
if (nargin < 2)
p = csymamd (S) ;
p1 = Tsymamd (S, [csymamd_default_knobs 0], [ ]) ;
else
p = csymamd (S, knobs) ;
p1 = Tsymamd (S, knobs, [ ]) ;
end
if (any (p1 ~= p))
error ('Asymamd mismatch!') ;
end
%-------------------------------------------------------------------------------
function check_perm (p, A, cmember)
% check_perm: check for a valid permutation vector
if (isempty (A) & isempty (p)) %#ok
% empty permutation vectors of empty matrices are OK
return
end
if (isempty (p))
error ('Bad permutation: cannot be empty') ;
end
[m n] = size (A) ;
[p_m p_n] = size (p) ;
if (p_n == 1)
% force p to be a row vector
p = p' ;
[p_m p_n] = size (p) ;
end
if (n ~= p_n)
error ('Bad permutation: wrong size') ;
end
if (p_m ~= 1) ;
% p must be a vector
error ('Bad permutation: not a vector') ;
else
if (any (sort (p) - (1:p_n)))
error ('Bad permutation') ;
end
end
if (nargin > 2)
% check cmember
c = cmember (p) ;
% c must be monotonically non-decreasing
c = diff (c) ;
if (any (c < 0))
error ('permutation breaks the cmember constraints') ;
end
end
%-------------------------------------------------------------------------------
function i = irand (n,s)
% irand: return a random vector of size s, with values between 1 and n
if (nargin == 1)
s = 1 ;
end
i = min (n, 1 + floor (rand (1,s) * n)) ;
%-------------------------------------------------------------------------------
function A = rand_matrix (n_max, m_max, mtype, d_rows, d_cols)
% rand_matrix: return a random sparse matrix
%
% A = rand_matrix (n_max, m_max, mtype, d_rows, d_cols)
%
% A binary matrix of random size, at most n_max-by-m_max, with d_rows dense rows
% and d_cols dense columns.
%
% mtype 1: square unsymmetric (m_max is ignored)
% mtype 2: rectangular
% mtype 3: symmetric (m_max is ignored)
n = irand (n_max) ;
if (mtype ~= 2)
% square
m = n ;
else
m = irand (m_max) ;
end
A = sprand (m, n, 10 / max (m,n)) ;
if (d_rows > 0)
% add dense rows
for k = 1:d_rows
i = irand (m) ;
nz = irand (n) ;
p = randperm (n) ;
p = p (1:nz) ;
A (i,p) = 1 ;
end
end
if (d_cols > 0)
% add dense cols
for k = 1:d_cols
j = irand (n) ;
nz = irand (m) ;
p = randperm (m) ;
p = p (1:nz) ;
A (p,j) = 1 ;
end
end
A = spones (A) ;
% ensure that there are no empty columns
d = find (full (sum (A,1)) == 0) ; %#ok
A (m,d) = 1 ; %#ok
% ensure that there are no empty rows
d = find (full (sum (A,2)) == 0) ; %#ok
A (d,n) = 1 ; %#ok
if (mtype == 3)
% symmetric
A = A + A' + speye (n) ;
end
A = spones (A) ;
%-------------------------------------------------------------------------------
% Tcolamd: run ccolamd in a testing mode
%-------------------------------------------------------------------------------
function p = Tcolamd (S, knobs, cmember)
% knobs (5) = 1 ;
p = ccolamdtestmex (S, knobs, cmember) ;
if (p (1) ~= -1)
check_perm (p, S) ;
end
%-------------------------------------------------------------------------------
% Tsymamd: run csymamd in a testing mode
%-------------------------------------------------------------------------------
function p = Tsymamd (S, knobs, cmember)
% knobs (2) = 1 ;
p = csymamdtestmex (S, knobs, cmember) ;
if (p (1) ~= -1)
check_perm (p, S) ;
end
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