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//------------------------------------------------------------------------------
// GB_wait: finish all pending computations on a single matrix
//------------------------------------------------------------------------------
// SuiteSparse:GraphBLAS, Timothy A. Davis, (c) 2017-2025, All Rights Reserved.
// SPDX-License-Identifier: Apache-2.0
//------------------------------------------------------------------------------
// CALLS: GB_builder
// The matrix A has zombies and/or pending tuples placed there by
// GrB_setElement, GrB_*assign, GB_mxm, or any other GraphBLAS method with an
// accum operator and a small update. Zombies must now be deleted, and pending
// tuples must now be assembled together and added into the matrix. The
// indices in A might also be jumbled; if so, they are sorted now.
// When the function returns, and all pending tuples and zombies have been
// deleted. This is true even the function fails due to lack of memory (in
// that case, the matrix is cleared as well).
// If A->nvec_nonempty is unknown (-1) it is computed.
// The A->Y hyper_hash is freed if the A->h hyperlist has to be constructed.
// Instead, it is not computed and left pending (as NULL). It is not modified
// if A->h doesn't change.
// If the method is successful, it does an OpenMP flush just before returning.
#define GB_FREE_WORKSPACE \
{ \
GB_Matrix_free (&Y) ; \
GB_Matrix_free (&T) ; \
GB_Matrix_free (&S) ; \
GB_Matrix_free (&W) ; \
}
#define GB_FREE_ALL \
{ \
GB_FREE_WORKSPACE ; \
GB_phybix_free (A) ; \
}
#include "select/GB_select.h"
#include "add/GB_add.h"
#include "binaryop/GB_binop.h"
#include "pending/GB_Pending.h"
#include "builder/GB_build.h"
#include "scalar/GB_Scalar_wrap.h"
GrB_Info GB_wait // finish all pending computations
(
GrB_Matrix A, // matrix with pending computations
const char *name, // name of the matrix
GB_Werk Werk
)
{
//--------------------------------------------------------------------------
// check inputs
//--------------------------------------------------------------------------
GrB_Info info = GrB_SUCCESS ;
struct GB_Matrix_opaque T_header, W_header, S_header ;
GrB_Matrix T = NULL, W = NULL, S = NULL, Y = NULL ;
ASSERT_MATRIX_OK (A, "A to wait", GB0_Z) ;
int64_t nvec_nonempty = GB_nvec_nonempty_get (A) ;
if (GB_IS_FULL (A) || GB_IS_BITMAP (A))
{
// full and bitmap matrices never have any pending work
ASSERT (!GB_ZOMBIES (A)) ;
ASSERT (!GB_JUMBLED (A)) ;
ASSERT (!GB_PENDING (A)) ;
ASSERT (nvec_nonempty >= 0) ;
// ensure the matrix is written to memory
#pragma omp flush
return (GrB_SUCCESS) ;
}
// only sparse and hypersparse matrices can have pending work
ASSERT (GB_IS_SPARSE (A) || GB_IS_HYPERSPARSE (A)) ;
ASSERT (GB_ZOMBIES_OK (A)) ;
ASSERT (GB_JUMBLED_OK (A)) ;
ASSERT (GB_PENDING_OK (A)) ;
//--------------------------------------------------------------------------
// get the zombie and pending count, and burble if work needs to be done
//--------------------------------------------------------------------------
int64_t nzombies = A->nzombies ;
int64_t npending = GB_Pending_n (A) ;
const bool A_iso = A->iso ;
if (nzombies > 0 || npending > 0 || A->jumbled || nvec_nonempty < 0)
{
GB_BURBLE_MATRIX (A, "(%swait:%s " GBd " %s, " GBd " pending%s%s) ",
A_iso ? "iso " : "", name, nzombies,
(nzombies == 1) ? "zombie" : "zombies", npending,
A->jumbled ? ", jumbled" : "",
nvec_nonempty < 0 ? ", nvec" : "") ;
}
//--------------------------------------------------------------------------
// determine the max # of threads to use
//--------------------------------------------------------------------------
int nthreads_max = GB_Context_nthreads_max ( ) ;
double chunk = GB_Context_chunk ( ) ;
//--------------------------------------------------------------------------
// check if only A->nvec_nonempty is needed
//--------------------------------------------------------------------------
if (npending == 0 && nzombies == 0 && !A->jumbled)
{
// A->Y is not modified. If not NULL, it remains valid
GB_nvec_nonempty_update (A) ;
#pragma omp flush
return (GrB_SUCCESS) ;
}
//--------------------------------------------------------------------------
// check if A only needs to be unjumbled
//--------------------------------------------------------------------------
if (npending == 0 && nzombies == 0)
{
// A is not conformed, so the sparsity structure of A is not modified.
// That is, if A has no pending tuples and no zombies, but is just
// jumbled, then it stays sparse or hypersparse. A->Y is not modified
// nor accessed, and remains NULL if it is NULL on input. If it is
// present, it remains valid.
GB_RETURN_IF_OUTPUT_IS_READONLY (A) ;
GB_OK (GB_unjumble (A, Werk)) ;
ASSERT (GB_nvec_nonempty_get (A) >= 0) ;
#pragma omp flush
return (GrB_SUCCESS) ;
}
//--------------------------------------------------------------------------
// assemble the pending tuples into T
//--------------------------------------------------------------------------
int64_t anz_orig = GB_nnz (A) ;
int64_t asize = A->type->size ;
int64_t tnz = 0 ;
if (npending > 0)
{
//----------------------------------------------------------------------
// construct a new hypersparse matrix T with just the pending tuples
//----------------------------------------------------------------------
// T has the same type as A->type, which can differ from the type of
// the pending tuples, A->Pending->type. The Pending->op can be NULL
// (an implicit SECOND function), or it can be any accum operator. The
// z=accum(x,y) operator can have any types, and it does not have to be
// associative. T is constructed as iso if A is iso.
GB_RETURN_IF_OUTPUT_IS_READONLY (A) ;
GB_void *S_input = (A_iso) ? ((GB_void *) A->x) : NULL ;
GrB_Type stype = (A_iso) ? A->type : A->Pending->type ;
GB_CLEAR_MATRIX_HEADER (T, &T_header) ;
info = GB_builder (
T, // create T using a static header
A->type, // T->type = A->type
A->vlen, // T->vlen = A->vlen
A->vdim, // T->vdim = A->vdim
A->is_csc, // T->is_csc = A->is_csc
&(A->Pending->i), // iwork_handle, becomes T->i on output
&(A->Pending->i_size),
&(A->Pending->j), // jwork_handle, free on output
&(A->Pending->j_size),
&(A->Pending->x), // Swork_handle, free on output
&(A->Pending->x_size),
A->Pending->sorted, // tuples may or may not be sorted
false, // there might be duplicates; look for them
A->Pending->nmax, // size of Pending->[ijx] arrays
true, // is_matrix: unused
NULL, NULL, S_input, // original I,J,S_input tuples
A_iso, // pending tuples are iso if A is iso
npending, // # of tuples
A->Pending->op, // dup operator for assembling duplicates,
// NULL if A is iso
stype, // type of Pending->x
true, // burble is allowed
Werk,
A->i_is_32, A->j_is_32, // true if Pending->[ij] are 32-bit,
// false if 64-bit
true, true, true // create T with 32/64 bits
) ;
//----------------------------------------------------------------------
// free pending tuples
//----------------------------------------------------------------------
// The tuples have been converted to T, which is more compact, and
// duplicates have been removed. The following work needs to be done
// even if the builder fails.
// GB_builder frees A->Pending->j and A->Pending->x. If successful,
// A->Pending->i is now T->i. Otherwise A->Pending->i is freed. In
// both cases, A->Pending->i is NULL.
ASSERT (A->Pending->i == NULL) ;
ASSERT (A->Pending->j == NULL) ;
ASSERT (A->Pending->x == NULL) ;
// free the list of pending tuples
GB_Pending_free (&(A->Pending)) ;
ASSERT (!GB_PENDING (A)) ;
ASSERT_MATRIX_OK (A, "A after moving pending tuples to T", GB0) ;
//----------------------------------------------------------------------
// check the status of the builder
//----------------------------------------------------------------------
// Finally check the status of the builder. The pending tuples, must
// be freed (just above), whether or not the builder is successful.
GB_OK (info) ;
ASSERT_MATRIX_OK (T, "T = hypersparse matrix of pending tuples", GB0) ;
ASSERT (GB_IS_HYPERSPARSE (T)) ;
ASSERT (!GB_ZOMBIES (T)) ;
ASSERT (!GB_JUMBLED (T)) ;
ASSERT (!GB_PENDING (T)) ;
tnz = GB_nnz (T) ;
ASSERT (tnz > 0) ;
}
//--------------------------------------------------------------------------
// delete zombies
//--------------------------------------------------------------------------
// A zombie is an entry A(i,j) in the matrix that as been marked for
// deletion, but hasn't been deleted yet. It is marked by replacing its
// index i with GB_ZOMBIE (i).
ASSERT_MATRIX_OK (A, "A before zombies removed", GB0) ;
if (nzombies > 0)
{
// remove all zombies from A
GB_RETURN_IF_OUTPUT_IS_READONLY (A) ;
struct GB_Scalar_opaque scalar_header ;
int64_t k = 0 ;
GrB_Scalar scalar = GB_Scalar_wrap (&scalar_header, GrB_INT64, &k) ;
GB_CLEAR_MATRIX_HEADER (W, &W_header) ;
GB_OK (GB_selector (W, GxB_NONZOMBIE, false, A, scalar, Werk)) ;
GB_OK (GB_transplant (A, A->type, &W, Werk)) ;
A->nzombies = 0 ;
}
ASSERT_MATRIX_OK (A, "A after zombies removed", GB0) ;
// all the zombies are gone, and pending tuples are now in T
ASSERT (!GB_ZOMBIES (A)) ;
ASSERT (GB_JUMBLED_OK (A)) ;
ASSERT (!GB_PENDING (A)) ;
//--------------------------------------------------------------------------
// unjumble the matrix
//--------------------------------------------------------------------------
GB_OK (GB_unjumble (A, Werk)) ;
ASSERT (!GB_ZOMBIES (A)) ;
ASSERT (!GB_JUMBLED (A)) ;
ASSERT (!GB_PENDING (A)) ;
//--------------------------------------------------------------------------
// check for pending tuples
//--------------------------------------------------------------------------
if (npending == 0)
{
// conform A to its desired sparsity structure and return result
GB_OK (GB_conform (A, Werk)) ;
ASSERT (GB_nvec_nonempty_get (A) >= 0) ;
#pragma omp flush
return (GrB_SUCCESS) ;
}
//--------------------------------------------------------------------------
// check for quick transplant
//--------------------------------------------------------------------------
int64_t anz = GB_nnz (A) ;
if (anz == 0)
{
// A has no entries so just transplant T into A, then free T and
// conform A to its desired hypersparsity.
GB_OK (GB_transplant_conform (A, A->type, &T, Werk)) ;
ASSERT (GB_nvec_nonempty_get (A) >= 0) ;
#pragma omp flush
return (GrB_SUCCESS) ;
}
//--------------------------------------------------------------------------
// S = A+T using the SECOND_ATYPE binary operator
//--------------------------------------------------------------------------
// A single parallel add: S=A+T, free T, and then transplant S back into A.
// FUTURE:: if GB_add could tolerate zombies in A, then the initial
// prune of zombies can be skipped.
// T->Y is not present (GB_builder does not create it). The old A->Y
// is still valid, if present, for the matrix A prior to added the
// pending tuples in T. GB_add may need A->Y to compute S, but it does
// not compute S->Y.
struct GB_BinaryOp_opaque op_header ;
GrB_BinaryOp op_2nd = GB_binop_second (A->type, &op_header) ;
// If anz > 0, T is hypersparse, even if A is a GrB_Vector
ASSERT (GB_IS_HYPERSPARSE (T)) ;
ASSERT (tnz > 0) ;
ASSERT (T->nvec > 0) ;
ASSERT (A->nvec > 0) ;
int64_t anvec = A->nvec ;
bool ignore ;
GB_CLEAR_MATRIX_HEADER (S, &S_header) ;
GB_OK (GB_add (S, A->type, A->is_csc, NULL, 0, 0, &ignore, A, T,
false, NULL, NULL, op_2nd, false, true, Werk)) ;
GB_Matrix_free (&T) ;
ASSERT_MATRIX_OK (S, "S after GB_wait:add", GB0) ;
//--------------------------------------------------------------------------
// check if the A->Y hyper-hash can be kept
//--------------------------------------------------------------------------
if (A->no_hyper_hash)
{
// A does not want the hyper_hash, so free A->Y and S->Y if present
GB_hyper_hash_free (A) ;
GB_hyper_hash_free (S) ;
}
bool Ai_is_32 = A->i_is_32 ;
bool Aj_is_32 = A->j_is_32 ;
if (GB_IS_HYPERSPARSE (A) && GB_IS_HYPERSPARSE (S) && A->Y != NULL
&& S->Y == NULL && !A->Y_shallow && !GB_is_shallow (A->Y)
&& Aj_is_32 == S->j_is_32 && S->nvec == anvec)
{
// A and S are both hypersparse, and the old A->Y exists and is not
// shallow. Check if S->h and A->h are identical. If so, remove A->Y
// from A and save it. Then after the transplant of S into A, below,
// if A is still hyperparse, transplant Y back into A->Y.
GB_Ah_DECLARE (Ah, const) ; GB_Ah_PTR (Ah, A) ;
GB_Sh_DECLARE (Sh, const) ; GB_Sh_PTR (Sh, S) ;
bool hsame = true ;
int nthreads = GB_nthreads (anvec, chunk, nthreads_max) ;
if (nthreads == 1)
{
// compare Ah and Sh with a single thread
if (Aj_is_32)
{
hsame = (memcmp (Ah32, Sh32, anvec * sizeof (uint32_t)) == 0) ;
}
else
{
hsame = (memcmp (Ah64, Sh64, anvec * sizeof (uint64_t)) == 0) ;
}
}
else
{
// compare Ah and Sh with several threads
int ntasks = 64 * nthreads ;
int tid ;
#pragma omp parallel for num_threads(nthreads) schedule(dynamic)
for (tid = 0 ; tid < ntasks ; tid++)
{
int64_t kstart, kend ;
GB_PARTITION (kstart, kend, anvec, tid, ntasks) ;
bool my_hsame ;
GB_ATOMIC_READ
my_hsame = hsame ;
if (my_hsame)
{
// compare this task's region of Ah and Sh
if (Aj_is_32)
{
my_hsame = (memcmp (Ah32 + kstart, Sh32 + kstart,
(kend - kstart) * sizeof (uint32_t)) == 0) ;
}
else
{
my_hsame = (memcmp (Ah64 + kstart, Sh64 + kstart,
(kend - kstart) * sizeof (uint64_t)) == 0) ;
}
if (!my_hsame)
{
// tell other tasks to exit early
GB_ATOMIC_WRITE
hsame = false ;
}
}
}
}
if (hsame)
{
// Ah and Sh are the same, so keep A->Y
Y = A->Y ;
A->Y = NULL ;
A->Y_shallow = false ;
}
}
//--------------------------------------------------------------------------
// transplant S into A, and conform it to its desired sparsity structure
//--------------------------------------------------------------------------
GB_OK (GB_transplant_conform (A, A->type, &S, Werk)) ;
ASSERT (GB_nvec_nonempty_get (A) >= 0) ;
//--------------------------------------------------------------------------
// restore the A->Y hyper_hash, if A is still hypersparse
//--------------------------------------------------------------------------
if (Y != NULL && GB_IS_HYPERSPARSE (A) && A->Y == NULL &&
Aj_is_32 == A->j_is_32)
{
// The hyperlist of A has not changed. A is still hypersparse, and has
// no A->Y after the transplant/conform above. The integer sizes in
// the Y matrix still match the j integers of A, so the
// transplant/conform did not modify them. The original A->Y is thus
// valid, so transplant it back into A. If A is no longer hypersparse,
// Y is not transplanted into A, and is freed by GB_FREE_WORKSPACE.
A->Y = Y ;
A->Y_shallow = false ;
Y = NULL ;
ASSERT (A->Y->i_is_32 == A->j_is_32) ;
ASSERT (A->Y->j_is_32 == A->j_is_32) ;
ASSERT (A->Y->p_is_32 == A->j_is_32) ;
}
//--------------------------------------------------------------------------
// free workspace and return result
//--------------------------------------------------------------------------
GB_FREE_WORKSPACE ;
ASSERT_MATRIX_OK (A, "A final for GB_wait", GB0) ;
#pragma omp flush
return (GrB_SUCCESS) ;
}
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