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//------------------------------------------------------------------------------
// GB_mx_object_to_mxArray: convert a GrB_Matrix to MATLAB struct
//------------------------------------------------------------------------------
// SuiteSparse:GraphBLAS, Timothy A. Davis, (c) 2017-2025, All Rights Reserved.
// SPDX-License-Identifier: Apache-2.0
//------------------------------------------------------------------------------
// Convert a GraphBLAS GrB_Matrix to a MATLAB struct C containing
// C.matrix and a string C.class. The GraphBLAS matrix is destroyed.
// This could be done using only user-callable GraphBLAS functions, by
// extracting the tuples and converting them into a MATLAB sparse matrix. But
// that would be much slower and take more memory. Instead, most of the work
// can be done by pointers, and directly accessing the internal contents of C.
// If C has type GB_BOOL_code or GB_FP64_code, then C can be converted to a
// MATLAB matrix in constant time with essentially no extra memory allocated.
// This is faster, but it means that this Test interface will only work with
// this specific implementation of GraphBLAS.
// Note that the GraphBLAS matrix may contain explicit zeros.
// If the GraphBLAS matrix is iso, it is converted to non-iso, but if it is
// returned as a struct, the C.iso is set true. Then when the struct is read
// back into GraphBLAS, the flag can be used to restore the iso property of the
// GraphBLAS matrix .
#include "GB_mex.h"
#define GB_AS_IF_FREE(p) \
{ \
GBMDUMP ("test, as-if-free removing %p\n", (void *) p) ; \
GB_Global_memtable_remove (p) ; \
(p) = NULL ; \
}
static const char *MatrixFields [ ] = {
"matrix", // 0
"class", // 1
"iso", // 2
"is_csc", // 3
"p_is_32", // 4
"j_is_32", // 5
"i_is_32", // 6
"values" } ; // 7
mxArray *GB_mx_object_to_mxArray // returns the MATLAB mxArray
(
GrB_Matrix *handle, // handle of GraphBLAS matrix to convert
const char *name,
const bool create_struct // if true, then return a struct
)
{
//--------------------------------------------------------------------------
// get the inputs
//--------------------------------------------------------------------------
mxArray *A, *Astruct, *X = NULL ;
GrB_Matrix C = *handle ;
GrB_Type ctype = C->type ;
ASSERT_MATRIX_OK (C, "C for conversion to MATLAB matrix or struct", GB0) ;
//--------------------------------------------------------------------------
// save the integer status of the matrix
//--------------------------------------------------------------------------
bool is_csc = C->is_csc ;
bool Cp_is_32 = C->p_is_32 ;
bool Cj_is_32 = C->j_is_32 ;
bool Ci_is_32 = C->i_is_32 ;
//--------------------------------------------------------------------------
// check matrix
//--------------------------------------------------------------------------
// may have pending tuples
ASSERT_MATRIX_OK (C, name, GB0) ;
// C must not be shallow
ASSERT (!C->p_shallow) ;
ASSERT (!C->h_shallow) ;
ASSERT (!C->b_shallow) ;
ASSERT (!C->i_shallow) ;
ASSERT (!C->x_shallow) ;
//--------------------------------------------------------------------------
// make sure there are no pending computations
//--------------------------------------------------------------------------
if (GB_IS_FULL (C) || GB_IS_BITMAP (C))
{
ASSERT (!GB_JUMBLED (C)) ;
ASSERT (!GB_ZOMBIES (C)) ;
ASSERT (!GB_PENDING (C)) ;
}
else
{
// this may convert C to full
GrB_Matrix_wait (C, GrB_MATERIALIZE) ;
C = (*handle) ;
}
// must be done after GrB_Matrix_wait:
int64_t cnz = GB_nnz (C) ;
ASSERT_MATRIX_OK (C, "TO mxArray after assembling pending tuples", GB0) ;
// ensure C is sparse or full, not hypersparse or bitmap
GxB_Matrix_Option_set_(C, GxB_SPARSITY_CONTROL, GxB_FULL + GxB_SPARSE) ;
ASSERT_MATRIX_OK (C, "TO mxArray, sparse or full", GB0) ;
ASSERT (!GB_IS_HYPERSPARSE (C)) ;
ASSERT (!GB_IS_BITMAP (C)) ;
// get the current sparsity
int sparsity ;
GxB_Matrix_Option_get_(C, GxB_SPARSITY_STATUS, &sparsity) ;
ASSERT (sparsity == GxB_FULL || sparsity == GxB_SPARSE) ;
// make sure it's CSC
if (!C->is_csc)
{
GxB_Matrix_Option_set_(C, GxB_FORMAT, GxB_BY_COL) ;
}
// setting to CSC may have transposed the matrix
ASSERT (GB_JUMBLED_OK (C)) ;
GrB_Matrix_wait (C, GrB_MATERIALIZE) ;
ASSERT (!GB_JUMBLED (C)) ;
cnz = GB_nnz (C) ;
ASSERT_MATRIX_OK (C, "TO mxArray, non-hyper CSC", GB0) ;
ASSERT (!GB_JUMBLED (C)) ;
ASSERT (!GB_IS_HYPERSPARSE (C)) ;
ASSERT (!GB_IS_BITMAP (C)) ;
ASSERT (GB_IS_SPARSE (C) || GB_IS_FULL (C)) ;
ASSERT (C->is_csc) ;
// convert C to non-iso
bool C_iso = C->iso ;
if (C_iso)
{
GB_convert_any_to_non_iso (C, true) ;
ASSERT_MATRIX_OK (C, "TO mxArray, non-iso non-hyper CSC", GB0) ;
}
// convert to all-64-bit
GB_convert_int (C, false, false, false, false) ; // OK: for MATLAB mxArray
ASSERT_MATRIX_OK (C, "C converted to all-64", GB0) ;
ASSERT (!C->p_is_32) ;
ASSERT (!C->j_is_32) ;
ASSERT (!C->i_is_32) ;
// empty MATLAB matrices don't want NULL pointers
if (C->x == NULL)
{
ASSERT (cnz == 0) ;
C->x = (GB_void *) GB_malloc_memory (2 * sizeof (double),
sizeof (GB_void), &(C->x_size)) ;
memset (C->x, 0, 2 * sizeof (double)) ;
C->x_shallow = false ;
}
bool C_is_full = (sparsity == GxB_FULL) ;
if (!C_is_full)
{
// empty MATLAB sparse matrices don't want NULL pointers
if (C->i == NULL)
{
ASSERT (cnz == 0) ;
C->i = (int64_t *) GB_malloc_memory (1, sizeof (uint64_t),
&(C->i_size)) ;
uint64_t *Ci = C->i ;
Ci [0] = 0 ;
C->i_shallow = false ;
}
if (C->p == NULL)
{
ASSERT (cnz == 0) ;
C->p = (int64_t *) GB_malloc_memory (C->vdim + 1, sizeof (uint64_t),
&(C->p_size)) ;
memset (C->p, 0, (C->vdim + 1) * sizeof (int64_t)) ;
C->p_shallow = false ;
}
}
//--------------------------------------------------------------------------
// create the MATLAB matrix A and link in the numerical values of C
//--------------------------------------------------------------------------
if (C_is_full)
{
// C is full.
// allocate an empty dense matrix of the right type, then set content
void *Cx = (void *) C->x ;
if (ctype == GrB_BOOL)
{
A = mxCreateLogicalMatrix (0, 0) ;
mxSetData (A, Cx) ;
}
else if (ctype == GrB_FP32)
{
A = mxCreateNumericMatrix (0, 0, mxSINGLE_CLASS, mxREAL) ;
mxSetSingles (A, Cx) ;
}
else if (ctype == GrB_FP64)
{
A = mxCreateNumericMatrix (0, 0, mxDOUBLE_CLASS, mxREAL) ;
mxSetDoubles (A, Cx) ;
}
else if (ctype == GrB_INT8)
{
A = mxCreateNumericMatrix (0, 0, mxINT8_CLASS, mxREAL) ;
mxSetInt8s (A, Cx) ;
}
else if (ctype == GrB_INT16)
{
A = mxCreateNumericMatrix (0, 0, mxINT16_CLASS, mxREAL) ;
mxSetInt16s (A, Cx) ;
}
else if (ctype == GrB_INT32)
{
A = mxCreateNumericMatrix (0, 0, mxINT32_CLASS, mxREAL) ;
mxSetInt32s (A, Cx) ;
}
else if (ctype == GrB_INT64)
{
A = mxCreateNumericMatrix (0, 0, mxINT64_CLASS, mxREAL) ;
mxSetInt64s (A, Cx) ;
}
else if (ctype == GrB_UINT8)
{
A = mxCreateNumericMatrix (0, 0, mxUINT8_CLASS, mxREAL) ;
mxSetUint8s (A, Cx) ;
}
else if (ctype == GrB_UINT16)
{
A = mxCreateNumericMatrix (0, 0, mxUINT16_CLASS, mxREAL) ;
mxSetUint16s (A, Cx) ;
}
else if (ctype == GrB_UINT32)
{
A = mxCreateNumericMatrix (0, 0, mxUINT32_CLASS, mxREAL) ;
mxSetUint32s (A, Cx) ;
}
else if (ctype == GrB_UINT64)
{
A = mxCreateNumericMatrix (0, 0, mxUINT64_CLASS, mxREAL) ;
mxSetUint64s (A, Cx) ;
}
else if (ctype == GxB_FC32)
{
A = mxCreateNumericMatrix (0, 0, mxSINGLE_CLASS, mxCOMPLEX) ;
mxSetComplexSingles (A, Cx) ;
}
else if (ctype == Complex || ctype == GxB_FC64)
{
A = mxCreateNumericMatrix (0, 0, mxDOUBLE_CLASS, mxCOMPLEX) ;
mxSetComplexDoubles (A, Cx) ;
}
else
{
mexErrMsgTxt ("... unsupported type") ;
}
mexMakeMemoryPersistent (C->x) ;
C->x_shallow = false ;
GB_AS_IF_FREE (C->x) ; // unlink C->x from C; now in MATLAB C
}
else if (C->type == GrB_BOOL)
{
// C is boolean, which is the same as a MATLAB logical sparse matrix
A = mxCreateSparseLogicalMatrix (0, 0, 0) ;
mexMakeMemoryPersistent (C->x) ;
mxSetData (A, (bool *) C->x) ;
C->x_shallow = false ;
// C->x is treated as if it was freed
GB_AS_IF_FREE (C->x) ; // unlink C->x from C; now in MATLAB C
}
else if (C->type == GrB_FP64)
{
// C is double, which is the same as a MATLAB double sparse matrix
A = mxCreateSparse (0, 0, 0, mxREAL) ;
mexMakeMemoryPersistent (C->x) ;
mxSetData (A, C->x) ;
C->x_shallow = false ;
// C->x is treated as if it was freed
GB_AS_IF_FREE (C->x) ; // unlink C->x from C; in MATLAB C
}
else if (C->type == Complex || C->type == GxB_FC64)
{
// user-defined Complex type, or GraphBLAS GxB_FC64
A = mxCreateSparse (C->vlen, C->vdim, cnz, mxCOMPLEX) ;
memcpy (mxGetComplexDoubles (A), C->x, cnz * sizeof (GxB_FC64_t)) ;
}
else if (C->type == GxB_FC32)
{
// C is single complex, typecast to sparse double complex
A = mxCreateSparse (C->vlen, C->vdim, cnz, mxCOMPLEX) ;
GB_void *Ax = (GB_void *) mxGetComplexDoubles (A) ;
if (Ax == NULL && cnz > 0) mexErrMsgTxt ("Ax is NULL!\n") ;
GB_cast_array (Ax, GB_FC64_code, C, 1) ;
}
else
{
// otherwise C is cast into a MATLAB double sparse matrix
A = mxCreateSparse (0, 0, 0, mxREAL) ;
size_t Sx_size ;
double *Sx = (double *) GB_malloc_memory (cnz+1, sizeof (double),
&Sx_size) ;
if (Sx == NULL && cnz > 0) mexErrMsgTxt ("Sx is NULL!\n") ;
GB_cast_array ((GB_void *) Sx, GB_FP64_code, C, 1) ;
mexMakeMemoryPersistent (Sx) ;
mxSetPr (A, Sx) ;
// Sx was just malloc'd. Treat it as if GraphBLAS has freed it
GB_AS_IF_FREE (Sx) ;
if (create_struct)
{
// If C is int64 or uint64, then typecasting can lose information,
// so keep an uncasted copy of C->x as well.
X = GB_mx_create_full (0, 0, C->type) ;
mxSetM (X, cnz) ;
mxSetN (X, 1) ;
mxSetData (X, C->x) ;
mexMakeMemoryPersistent (C->x) ;
C->x_shallow = false ;
// treat C->x as if it were freed
GB_AS_IF_FREE (C->x) ;
}
}
// set nrows, ncols, nzmax, and the pattern of A
mxSetM (A, C->vlen) ;
mxSetN (A, C->vdim) ;
mxSetNzmax (A, cnz) ;
if (!C_is_full)
{
ASSERT (!C->p_is_32) ;
ASSERT (!C->j_is_32) ;
ASSERT (!C->i_is_32) ;
mxFree (mxGetJc (A)) ;
mxFree (mxGetIr (A)) ;
mexMakeMemoryPersistent (C->p) ;
mexMakeMemoryPersistent (C->i) ;
mxSetJc (A, (size_t *) C->p) ;
mxSetIr (A, (size_t *) C->i) ;
// treat C->p as if freed
GB_AS_IF_FREE (C->p) ;
// treat C->i as if freed
C->i_shallow = false ;
GB_AS_IF_FREE (C->i) ;
}
//--------------------------------------------------------------------------
// free C
//--------------------------------------------------------------------------
// free C, but leave any shallow components untouched
// since these have been transplanted into the MATLAB matrix.
GrB_Matrix_free_(handle) ;
//--------------------------------------------------------------------------
// return result as a MATLAB struct or a MATLAB matrix
//--------------------------------------------------------------------------
if (create_struct)
{
// create the type
mxArray *atype = GB_mx_Type_to_mxstring (ctype) ;
// create the iso flag
mxArray *c_iso = mxCreateLogicalScalar (C_iso) ;
// create the csc flag
mxArray *c_csc = mxCreateLogicalScalar (is_csc) ;
// create the *is_32 flags
mxArray *p_32 = mxCreateLogicalScalar (Cp_is_32) ;
mxArray *j_32 = mxCreateLogicalScalar (Cj_is_32) ;
mxArray *i_32 = mxCreateLogicalScalar (Ci_is_32) ;
// create the output struct
Astruct = mxCreateStructMatrix (1, 1,
(X == NULL) ? 7 : 8, MatrixFields) ;
mxSetFieldByNumber (Astruct, 0, 0, A) ; // matrix
mxSetFieldByNumber (Astruct, 0, 1, atype) ; // class
mxSetFieldByNumber (Astruct, 0, 2, c_iso) ; // iso
mxSetFieldByNumber (Astruct, 0, 3, c_csc) ; // is_csc
mxSetFieldByNumber (Astruct, 0, 4, p_32) ; // p_is_32
mxSetFieldByNumber (Astruct, 0, 5, j_32) ; // j_is_32
mxSetFieldByNumber (Astruct, 0, 6, i_32) ; // i_is_32
if (X != NULL)
{
mxSetFieldByNumber (Astruct, 0, 7, X) ; // values
}
return (Astruct) ;
}
else
{
return (A) ;
}
}
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