1
2
3
4
5
6
7
8
9
10
11
12
13
14
15
16
17
18
19
20
21
22
23
24
25
26
27
28
29
30
31
32
33
34
35
36
37
38
39
40
41
42
43
44
45
46
47
48
49
50
51
52
53
54
55
56
57
58
59
60
61
62
63
64
65
66
67
68
69
70
71
72
73
74
75
76
77
78
79
80
81
82
83
84
85
86
87
88
89
90
91
92
93
94
95
96
97
98
99
100
101
102
103
104
105
106
107
108
109
110
111
112
113
114
115
116
117
118
119
120
121
122
123
124
125
126
127
128
129
130
131
132
133
134
135
136
137
138
139
140
141
142
143
144
145
146
147
148
149
150
151
152
153
154
155
156
157
158
159
160
161
162
163
164
165
166
167
168
169
170
171
172
173
174
175
176
177
178
179
180
181
182
183
184
185
186
187
188
189
190
191
192
193
194
195
196
197
198
199
200
201
202
203
204
205
206
207
208
209
210
211
212
213
214
215
216
217
218
219
220
221
222
223
224
225
226
227
228
229
230
231
232
233
234
235
236
237
238
239
240
241
242
243
244
245
246
247
248
249
250
251
252
253
254
255
256
257
258
259
260
261
262
263
264
265
266
267
268
269
270
271
272
273
274
275
276
277
278
279
280
281
282
283
284
285
286
287
288
289
290
291
292
293
294
295
|
function cholmod_make
%CHOLMOD_MAKE compiles the CHOLMOD mexFunctions
%
% Example:
% cholmod_make
%
% CHOLMOD relies on AMD and COLAMD, and optionally CCOLAMD, CAMD, and
% METIS. You must type the cholmod_make command while in the
% CHOLMOD/MATLAB directory.
%
% See also analyze, bisect, chol2, cholmod2, etree2, lchol, ldlchol,
% ldlsolve, ldlupdate, metis, spsym, nesdis, septree, resymbol, sdmult,
% symbfact2, mread, mwrite, ldlrowmod.
% Copyright 2006-2023, Timothy A. Davis, All Rights Reserved.
% SPDX-License-Identifier: GPL-2.0+
if verLessThan ('matlab', '9.4')
error ('MATLAB 9.4 (R2018a) or later is required') ;
end
details = 0 ; % 1 if details of each command are to be printed
% -R2018a: interleaved complex is required
flags = '-O -R2018a -silent ' ;
if (ispc)
% MSVC does not define ssize_t
flags = [flags ' -DNO_SSIZE_T'] ;
% disable the SuiteSparse_config timer
flags = ['-DNTIMER ' flags] ;
end
include = '-I. -I.. -I../../AMD/Include -I../../COLAMD/Include -I../../CCOLAMD/Include -I../../CAMD/Include -I../Include -I../../SuiteSparse_config' ;
if (~ispc)
% Linux/Unix require these flags for large file support
include = [include ' -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE'] ;
end
% Determine if METIS is available
if (exist ('../SuiteSparse_metis', 'dir'))
fprintf ('Compiling CHOLMOD with METIS for MATLAB Version %s\n', version) ;
include = [include ' -I../SuiteSparse_metis/include'] ;
include = [include ' -I../SuiteSparse_metis/GKlib'] ;
include = [include ' -I../SuiteSparse_metis/libmetis'] ;
else
fprintf ('Compiling CHOLMOD without METIS for MATLAB Version %s\n', version) ;
include = ['-DNPARTITION ' include] ;
end
%---------------------------------------------------------------------------
% BLAS option
%---------------------------------------------------------------------------
if (ispc)
% BLAS/LAPACK functions have no underscore on Windows
flags = [flags ' -DBLAS_NO_UNDERSCORE'] ;
if (verLessThan ('matlab', '9.5'))
lapack = 'libmwlapack.lib libmwblas.lib' ;
else
lapack = '-lmwlapack -lmwblas' ;
end
else
% BLAS/LAPACK functions have an underscore suffix
flags = [flags ' -DBLAS_UNDERSCORE'] ;
lapack = '-lmwlapack -lmwblas' ;
end
% using the 64-bit BLAS
flags = [flags ' -DBLAS64'] ;
if (~(ispc || ismac))
% for POSIX timing routine
lapack = [lapack ' -lrt'] ;
end
%------------------------------------------------------------------------------
config_src = { '../../SuiteSparse_config/SuiteSparse_config' } ;
ordering_src = { ...
'../../AMD/Source/amd_l1', ...
'../../AMD/Source/amd_l2', ...
'../../AMD/Source/amd_l_aat', ...
'../../AMD/Source/amd_l_control', ...
'../../AMD/Source/amd_l_defaults', ...
'../../AMD/Source/amd_l_dump', ...
'../../AMD/Source/amd_l_info', ...
'../../AMD/Source/amd_l_order', ...
'../../AMD/Source/amd_l_postorder', ...
'../../AMD/Source/amd_l_post_tree', ...
'../../AMD/Source/amd_l_preprocess', ...
'../../AMD/Source/amd_l_valid', ...
'../../CAMD/Source/camd_l1', ...
'../../CAMD/Source/camd_l2', ...
'../../CAMD/Source/camd_l_aat', ...
'../../CAMD/Source/camd_l_control', ...
'../../CAMD/Source/camd_l_defaults', ...
'../../CAMD/Source/camd_l_dump', ...
'../../CAMD/Source/camd_l_info', ...
'../../CAMD/Source/camd_l_order', ...
'../../CAMD/Source/camd_l_postorder', ...
'../../CAMD/Source/camd_l_preprocess', ...
'../../CAMD/Source/camd_l_valid', ...
'../../COLAMD/Source/colamd_l', ...
'../../CCOLAMD/Source/ccolamd_l' } ;
sputil2 = { 'sputil2' } ;
cholmod_src = {
'../Utility/cholmod_l_aat', ...
'../Utility/cholmod_l_add', ...
'../Utility/cholmod_l_add_size_t', ...
'../Utility/cholmod_l_allocate_dense', ...
'../Utility/cholmod_l_allocate_factor', ...
'../Utility/cholmod_l_allocate_sparse', ...
'../Utility/cholmod_l_allocate_triplet', ...
'../Utility/cholmod_l_allocate_work', ...
'../Utility/cholmod_l_alloc_factor', ...
'../Utility/cholmod_l_alloc_work', ...
'../Utility/cholmod_l_band', ...
'../Utility/cholmod_l_band_nnz', ...
'../Utility/cholmod_l_calloc', ...
'../Utility/cholmod_l_change_factor', ...
'../Utility/cholmod_l_clear_flag', ...
'../Utility/cholmod_l_copy', ...
'../Utility/cholmod_l_copy_dense2', ...
'../Utility/cholmod_l_copy_dense', ...
'../Utility/cholmod_l_copy_factor', ...
'../Utility/cholmod_l_copy_sparse', ...
'../Utility/cholmod_l_copy_triplet', ...
'../Utility/cholmod_l_cumsum', ...
'../Utility/cholmod_l_dbound', ...
'../Utility/cholmod_l_defaults', ...
'../Utility/cholmod_l_dense_nnz', ...
'../Utility/cholmod_l_dense_to_sparse', ...
'../Utility/cholmod_l_divcomplex', ...
'../Utility/cholmod_l_ensure_dense', ...
'../Utility/cholmod_l_error', ...
'../Utility/cholmod_l_eye', ...
'../Utility/cholmod_l_factor_to_sparse', ...
'../Utility/cholmod_l_finish', ...
'../Utility/cholmod_l_free', ...
'../Utility/cholmod_l_free_dense', ...
'../Utility/cholmod_l_free_factor', ...
'../Utility/cholmod_l_free_sparse', ...
'../Utility/cholmod_l_free_triplet', ...
'../Utility/cholmod_l_free_work', ...
'../Utility/cholmod_l_hypot', ...
'../Utility/cholmod_l_malloc', ...
'../Utility/cholmod_l_maxrank', ...
'../Utility/cholmod_l_mult_size_t', ...
'../Utility/cholmod_l_nnz', ...
'../Utility/cholmod_l_ones', ...
'../Utility/cholmod_l_pack_factor', ...
'../Utility/cholmod_l_ptranspose', ...
'../Utility/cholmod_l_reallocate_column', ...
'../Utility/cholmod_l_reallocate_factor', ...
'../Utility/cholmod_l_reallocate_sparse', ...
'../Utility/cholmod_l_reallocate_triplet', ...
'../Utility/cholmod_l_realloc', ...
'../Utility/cholmod_l_realloc_multiple', ...
'../Utility/cholmod_l_sbound', ...
'../Utility/cholmod_l_score_comp', ...
'../Utility/cholmod_l_set_empty', ...
'../Utility/cholmod_l_sort', ...
'../Utility/cholmod_l_sparse_to_dense', ...
'../Utility/cholmod_l_sparse_to_triplet', ...
'../Utility/cholmod_l_speye', ...
'../Utility/cholmod_l_spzeros', ...
'../Utility/cholmod_l_start', ...
'../Utility/cholmod_l_transpose', ...
'../Utility/cholmod_l_transpose_sym', ...
'../Utility/cholmod_l_transpose_unsym', ...
'../Utility/cholmod_l_triplet_to_sparse', ...
'../Utility/cholmod_l_version', ...
'../Utility/cholmod_l_xtype', ...
'../Utility/cholmod_l_zeros', ...
'../Utility/cholmod_mult_uint64_t', ...
'../Utility/cholmod_memdebug', ...
'../Check/cholmod_l_check', ...
'../Check/cholmod_l_read', ...
'../Check/cholmod_l_write', ...
'../Cholesky/cholmod_l_amd', ...
'../Cholesky/cholmod_l_analyze', ...
'../Cholesky/cholmod_l_colamd', ...
'../Cholesky/cholmod_l_etree', ...
'../Cholesky/cholmod_l_factorize', ...
'../Cholesky/cholmod_l_postorder', ...
'../Cholesky/cholmod_l_rcond', ...
'../Cholesky/cholmod_l_resymbol', ...
'../Cholesky/cholmod_l_rowcolcounts', ...
'../Cholesky/cholmod_l_rowfac', ...
'../Cholesky/cholmod_l_solve', ...
'../Cholesky/cholmod_l_spsolve', ...
'../MatrixOps/cholmod_l_drop', ...
'../MatrixOps/cholmod_l_horzcat', ...
'../MatrixOps/cholmod_l_norm', ...
'../MatrixOps/cholmod_l_scale', ...
'../MatrixOps/cholmod_l_sdmult', ...
'../MatrixOps/cholmod_l_ssmult', ...
'../MatrixOps/cholmod_l_submatrix', ...
'../MatrixOps/cholmod_l_vertcat', ...
'../MatrixOps/cholmod_l_symmetry', ...
'../Modify/cholmod_l_rowadd', ...
'../Modify/cholmod_l_rowdel', ...
'../Modify/cholmod_l_updown', ...
'../Supernodal/cholmod_l_super_numeric', ...
'../Supernodal/cholmod_l_super_solve', ...
'../Supernodal/cholmod_l_super_symbolic', ...
'../Partition/cholmod_metis_wrapper', ...
'../Partition/cholmod_l_ccolamd', ...
'../Partition/cholmod_l_csymamd', ...
'../Partition/cholmod_l_camd', ...
'../Partition/cholmod_l_metis', ...
'../Partition/cholmod_l_nesdis' } ;
cholmod_mex_src = { ...
'analyze', ...
'bisect', ...
'chol2', ...
'cholmod2', ...
'etree2', ...
'lchol', ...
'ldlchol', ...
'ldlsolve', ...
'ldlupdate', ...
'ldlrowmod', ...
'metis', ...
'spsym', ...
'nesdis', ...
'septree', ...
'resymbol', ...
'sdmult', ...
'symbfact2', ...
'mread', ...
'mwrite', ...
'lxbpattern', 'lsubsolve' } ; % <=== these 2 are just for testing
if (ispc)
obj_extension = '.obj' ;
else
obj_extension = '.o' ;
end
% compile each library source file
obj = '' ;
source = [sputil2 ordering_src config_src cholmod_src ] ;
kk = 0 ;
for f = source
ff = f {1} ;
slash = strfind (ff, '/') ;
if (isempty (slash))
slash = 1 ;
else
slash = slash (end) + 1 ;
end
o = ff (slash:end) ;
% fprintf ('%s\n', o) ;
o = [o obj_extension] ; %#ok
obj = [obj ' ' o] ; %#ok
s = sprintf ('mex %s %s -c %s.c', flags, include, ff) ;
kk = do_cmd (s, kk, details, '.') ;
end
% compile each mexFunction
for f = cholmod_mex_src
s = sprintf ('mex %s %s %s.c', flags, include, f{1}) ;
s = [s obj ' ' lapack] ; %#ok
kk = do_cmd (s, kk, details, ':') ;
end
% clean up
s = ['delete ' obj] ;
do_cmd (s, kk, details, '.') ;
fprintf ('\nCHOLMOD successfully compiled\n') ;
%-----------------------------------------------------------------------------
function kk = do_cmd (s, kk, details, progress)
%DO_CMD: evaluate a command, and either print it or print a "."
if (details)
fprintf ('%s\n', s) ;
else
if (mod (kk, 60) == 0)
fprintf ('\n') ;
end
kk = kk + 1 ;
fprintf (progress) ;
end
eval (s) ;
|
