File: sumaclust.h

package info (click to toggle)
sumaclust 1.0.20-1
  • links: PTS, VCS
  • area: main
  • in suites: stretch
  • size: 632 kB
  • ctags: 705
  • sloc: ansic: 4,257; lex: 174; makefile: 95
file content (34 lines) | stat: -rw-r--r-- 618 bytes parent folder | download | duplicates (2)
1
2
3
4
5
6
7
8
9
10
11
12
13
14
15
16
17
18
19
20
21
22
23
24
25
26
27
28
29
30
31
32
33
34
/*
 * sumaclust.h
 *
 *  Created on: april 2, 2012
 *      Author: mercier
 */


#ifndef SUMACLUST_H_
#define SUMACLUST_H_

typedef struct {
    int32_t			next;
    int32_t			threads_number;
    int*			potential_nexts_list;
	fastaSeqPtr*    db;
	int				n;
	int             normalize;
	int 			reference;
	BOOL			lcsmode;
	BOOL			fast;
	double			threshold;
    BOOL 			stop;
    int				sizeForSeqs;
    int16_t**		addresses;
    int16_t**		iseqs1;
    int16_t**		iseqs2;
    int				seeds_counter;
    double			worstscore;
    double			max_ratio;
    int64_t 		elapsedtime;
} thread_control_t;

#endif /* SUMACLUST_H_ */