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#!/usr/bin/env python
# Eclipse SUMO, Simulation of Urban MObility; see https://eclipse.dev/sumo
# Copyright (C) 2007-2023 German Aerospace Center (DLR) and others.
# This program and the accompanying materials are made available under the
# terms of the Eclipse Public License 2.0 which is available at
# https://www.eclipse.org/legal/epl-2.0/
# This Source Code may also be made available under the following Secondary
# Licenses when the conditions for such availability set forth in the Eclipse
# Public License 2.0 are satisfied: GNU General Public License, version 2
# or later which is available at
# https://www.gnu.org/licenses/old-licenses/gpl-2.0-standalone.html
# SPDX-License-Identifier: EPL-2.0 OR GPL-2.0-or-later
# @file plotXMLAttributes.py
# @author Jakob Erdmann
# @author Mirko Barthauer
# @date 2021-11-05
"""
This script plots arbitrary xml attributes from xml files
Individual trajectories can be clicked in interactive mode to print the data Id on the console
selects two attributs for x and y axis and a third (id-attribute) for grouping
of data points into lines
"""
from __future__ import absolute_import
from __future__ import print_function
import os
import re
import sys
from collections import defaultdict
import fnmatch
import matplotlib
if 'matplotlib.backends' not in sys.modules:
if 'TEXTTEST_SANDBOX' in os.environ or (os.name == 'posix' and 'DISPLAY' not in os.environ):
matplotlib.use('Agg')
import matplotlib.pyplot as plt # noqa
try:
import xml.etree.cElementTree as ET
except ImportError as e:
print("recovering from ImportError '%s'" % e)
import xml.etree.ElementTree as ET
sys.path.append(os.path.join(os.path.dirname(sys.argv[0]), '..'))
from sumolib import openz # noqa
from sumolib.miscutils import uMin, uMax, parseTime # noqa
from sumolib.options import ArgumentParser, RawDescriptionHelpFormatter # noqa
import sumolib.visualization.helpers # noqa
INDEX_ATTR = "@INDEX"
RANK_ATTR = "@RANK"
COUNT_ATTR = "@COUNT"
DENS_ATTR = "@DENSITY"
BOX_ATTR = "@BOX"
NONE_ATTR = "@NONE"
NONE_ATTR_DEFAULT = 0
POST_PROCESSING_ATTRS = [RANK_ATTR, COUNT_ATTR, BOX_ATTR, DENS_ATTR]
SYMBOLIC_ATTRS = POST_PROCESSING_ATTRS + [INDEX_ATTR]
def getOptions(args=None):
optParser = ArgumentParser(
description='Plot arbitrary attributes from xml files',
epilog='Individual trajectories can be clicked in interactive mode to print the data Id on the console\n'
'selects two attributs for x and y axis and optionally a third (id-attribute)\n'
'for grouping of data points into lines\n\n'
'Example\n'
' plotXMLAttributes.py -x started -y initialPersons -s stopout.xml\n'
' plots passengers over time for vehicles from SUMO stop output',
formatter_class=RawDescriptionHelpFormatter, conflict_handler='resolve')
optParser.add_option("files", nargs='+', category="input", type=optParser.file_list,
help="List of XML files to plot")
optParser.add_option("-x", "--xattr", help="attribute for x-axis")
optParser.add_option("-y", "--yattr", help="attribute for y-axis")
optParser.add_option("-i", "--idattr", default="id", help="attribute for grouping data points into lines")
optParser.add_option("--xelem", help="element for x-axis")
optParser.add_option("--yelem", help="element for y-axis")
optParser.add_option("--idelem", help="element for grouping data points into lines")
optParser.add_option("-s", "--show", action="store_true", category="output",
default=False, help="show plot directly")
optParser.add_option("--csv-output", dest="csv_output", category="output",
help="write plot as csv")
optParser.add_option("--filter-ids", dest="filterIDs", help="only plot data points from the given list of ids")
optParser.add_option("-p", "--pick-distance", dest="pickDist", type=float, default=1,
help="pick lines within the given distance in interactive plot mode")
optParser.add_option("--label", help="plot label (default input file name")
optParser.add_option("-j", "--join-files", action="store_true", dest="joinFiles", default=False,
help="Do not distinguis data points by file")
optParser.add_option("--join-x", action="store_true", dest="joinx", default=False,
help="if --xattr is a list concatenate the values")
optParser.add_option("--join-y", action="store_true", dest="joiny", default=False,
help="if --yattr is a list concatenate the values")
optParser.add_option("--xfactor", help="multiplier for x-data", type=float, default=1)
optParser.add_option("--yfactor", help="multiplier for y-data", type=float, default=1)
optParser.add_option("--xbin", help="binning size for x-data", type=float)
optParser.add_option("--ybin", help="binning size for y-data", type=float)
optParser.add_option("--xclamp", default=None,
help="clamp x values to range A:B or half-range A: / :B")
optParser.add_option("--yclamp", default=None,
help="clamp y values to range A:B or half-range A: / :B")
optParser.add_option("--invert-yaxis", dest="invertYAxis", action="store_true",
default=False, help="Invert the Y-Axis")
optParser.add_option("--scatterplot", action="store_true", category="visualization",
default=False, help="Draw a scatterplot instead of lines")
optParser.add_option("--barplot", action="store_true", category="visualization",
default=False, help="Draw a bar plot parallel to the y-axis")
optParser.add_option("--hbarplot", action="store_true", category="visualization",
default=False, help="Draw a bar plot parallel to the x-axis")
optParser.add_option("--legend", action="store_true", default=False, category="visualization", help="Add legend")
optParser.add_option("-v", "--verbose", action="store_true", default=False, help="tell me what you are doing")
sumolib.visualization.helpers.addPlotOptions(optParser)
sumolib.visualization.helpers.addInteractionOptions(optParser)
options = optParser.parse_args(args=args)
options.attrOptions = ['idattr', 'xattr', 'yattr']
options.attrElems = [options.idelem, options.xelem, options.yelem]
if options.filterIDs is not None:
options.filterIDs = set(options.filterIDs.split(','))
for a in options.attrOptions:
if getattr(options, a) is None:
sys.exit("mandatory argument --%s is missing" % a)
if options.xlabel is None:
if options.xattr == BOX_ATTR:
if options.idattr:
options.xlabel = options.idattr
else:
options.xlabel = "file"
else:
options.xlabel = options.xattr
if options.xclamp is not None:
options.xlabel += " clamp(%s)" % options.xclamp
if options.ylabel is None:
if options.yattr == BOX_ATTR:
if options.idattr:
options.ylabel = options.idattr
else:
options.ylabel = "file"
else:
options.ylabel = options.yattr
if options.yclamp is not None:
options.ylabel += " clamp(%s)" % options.yclamp
# keep old presets from before integration of common options
options.nolegend = not options.legend
if options.show:
sys.stderr.write("Option --show is now set by default and will be removed in the future." +
"Use --blind to disable the plot window\n")
if options.xattr == BOX_ATTR and options.yattr == BOX_ATTR:
sys.exit("Boxplot can only be specified for one dimension")
options.boxplot = options.xattr == BOX_ATTR or options.yattr == BOX_ATTR
if options.barplot and options.hbarplot:
sys.exit("Barplot can only be specified for one axis")
options.barbin = 0
if options.barplot:
if options.xbin is None:
options.xbin = 1.0
if options.verbose:
print("Binning set to %s for barplot. Use option --xbin to set a custom value." % options.xbin)
options.barbin = options.xbin
if options.hbarplot:
if options.ybin is None:
options.ybin = 1.0
if options.verbose:
print(("Binning set to %s for horizontal barplot." +
" Use option --ybin to set a custom value.") % options.xbin)
options.barbin = options.ybin
options.xclampRange = interpretClamp(options.xclamp)
options.yclampRange = interpretClamp(options.yclamp)
return options
def interpretClamp(clamp):
if clamp is None:
return None
clamp = clamp.split(":")
if len(clamp) != 2:
sys.exit("Clamp option requires a single ':' value")
cmin = float(clamp[0]) if clamp[0] else uMin
cmax = float(clamp[1]) if clamp[1] else uMax
return cmin, cmax
def write_csv(data, fname):
with open(fname, 'w') as f:
for dataID in sorted(data.keys(), key=str):
vals = data[dataID]
f.write('# "%s"\n' % dataID)
for x in zip(*vals):
f.write(" ".join(map(str, x)) + "\n")
# 2 blank lines indicate a new data block in gnuplot
f.write('\n\n')
def short_names(filenames, noEmpty):
if len(filenames) == 1:
return filenames
reversedNames = [''.join(reversed(f)) for f in filenames]
prefix = os.path.commonprefix(filenames)
suffix = os.path.commonprefix(reversedNames)
prefixLen = len(prefix)
suffixLen = len(suffix)
shortened = [f[prefixLen:-suffixLen] for f in filenames]
if noEmpty and any([not f for f in shortened]):
# make longer to avoid empty file names
base = os.path.basename(prefix)
shortened = [base + f for f in shortened]
return shortened
def onpick(event):
mevent = event.mouseevent
print("dataID=%s x=%d y=%d" % (event.artist.get_label(), mevent.xdata, mevent.ydata))
def getDataStream(options):
# determine elements and nesting for the given attributes
# by reading from the first file
attrOptions = options.attrOptions
attr2elem = {}
elem2level = {}
# handle attribute lists
allAttrs = set()
attr2parts = {}
for a in attrOptions:
attr = getattr(options, a)
parts = attr.split(',')
allAttrs.update(parts)
attr2parts[attr] = parts
splitX = len(attr2parts[options.xattr]) > 1 and not options.joinx
splitY = len(attr2parts[options.yattr]) > 1 and not options.joiny
level = 0
with openz(options.files[0]) as xmlf:
for event, elem in ET.iterparse(xmlf, ("start", "end")):
if event == "start":
level += 1
for a, e in zip(attrOptions, options.attrElems):
attrOrig = getattr(options, a)
for attr in attr2parts[attrOrig]:
if attr in elem.keys():
if e is not None and e != elem.tag:
# print("skipping attribute '%s' in element '%s' (required elem '%s'" %
# (attr, elem.tag, e))
continue
elem2level[elem.tag] = level
if attr in attr2elem:
oldTag = attr2elem[attr]
if oldTag != elem.tag:
if elem2level[oldTag] < level:
attr2elem[attr] = elem.tag
print("Warning: found %s '%s' in element '%s' (level %s) and "
"element '%s' (level %s). Using '%s'." %
(a, attr, oldTag, elem2level[oldTag], elem.tag, level, attr2elem[attr]))
else:
attr2elem[attr] = elem.tag
if len(attr2elem) == len(allAttrs):
# all attributes have been seen
break
elif event == "end":
level -= 1
if len(attr2elem) != len(allAttrs):
for a in attrOptions:
attrOrig = getattr(options, a)
for attr in attr2parts[attrOrig]:
if attr not in attr2elem:
lvlElem = [(lv, el) for el, lv in elem2level.items()]
minLevelElem = sorted(lvlElem)[-1][1]
if attr in SYMBOLIC_ATTRS:
attr2elem[attr] = minLevelElem
else:
msg = "%s '%s' not found in %s" % (a, attr, options.files[0])
if a == 'idattr':
if attr != NONE_ATTR:
print(msg, file=sys.stderr)
options.idattr = NONE_ATTR
attr2elem[attr] = minLevelElem
allAttrs.remove(attr)
allAttrs.add(NONE_ATTR)
attr2parts[NONE_ATTR] = [NONE_ATTR]
else:
sys.exit("Mandatory " + msg)
allElems = list(set(attr2elem.values()))
attrs = [getattr(options, a) for a in attrOptions]
# we don't know the order of the elements and we cannot get it from our xml parser
if len(allElems) == 2:
def datastream(xmlfile):
skippedLines = defaultdict(int)
elems = sorted(allElems, key=lambda e: elem2level[e])
mE0 = "<%s " % elems[0]
mE1 = "<%s " % elems[1]
attrs0 = [a for a in allAttrs if attr2elem[a] == elems[0]]
attrs1 = [a for a in allAttrs if attr2elem[a] == elems[1]]
mAs0 = [(a, re.compile('%s="([^"]*)"' % a)) for a in attrs0]
mAs1 = [(a, re.compile('%s="([^"]*)"' % a)) for a in attrs1]
values = {} # attr -> value
index = 0
with openz(xmlfile) as xmlf:
for line in xmlf:
if mE0 in line:
for a, r in mAs0:
values[a] = r.search(line).groups()[0]
if mE1 in line:
skip = False
for a, r in mAs1:
m = r.search(line)
if m:
values[a] = m.groups()[0]
elif a == INDEX_ATTR:
values[a] = index
elif a in POST_PROCESSING_ATTRS:
# set in post-processing
values[a] = 0
elif a == NONE_ATTR:
values[a] = NONE_ATTR_DEFAULT
else:
skip = True
skippedLines[a] += 1
if not skip:
for toYield in combineValues(attrs, attr2parts, values, splitX, splitY):
yield toYield
index += 1
for attr, count in skippedLines.items():
print("Warning: Skipped %s lines because of missing attributes '%s'." % (
count, attr), file=sys.stderr)
return datastream
elif len(allElems) == 1:
def datastream(xmlfile):
mE = "<%s " % allElems[0]
mAs = [re.compile('%s="([^"]*)"' % a) for a in allAttrs]
index = 0
with openz(xmlfile) as xmlf:
for line in xmlf:
if mE in line:
skip = False
values = {} # attr -> value
for a, r in zip(allAttrs, mAs):
if a == INDEX_ATTR:
values[a] = index
elif a in POST_PROCESSING_ATTRS:
# set in post-processing
values[a] = 0
elif a == NONE_ATTR:
values[a] = NONE_ATTR_DEFAULT
else:
m = r.search(line)
if m:
values[a] = m.groups()[0]
else:
skip = True
if not skip:
for toYield in combineValues(attrs, attr2parts, values, splitX, splitY):
yield toYield
index += 1
return datastream
else:
sys.exit("Found attributes at elements %s but at most 2 elements are supported" % allElems)
def combineValues(attrs, attr2parts, values, splitX, splitY):
needSplit = splitX or splitY
toYield = []
for a, split in zip(attrs, [False, splitX, splitY]):
if len(attr2parts[a]) == 1:
if needSplit:
toYield.append([values[a]])
else:
toYield.append(values[a])
else:
v = [values[ap] for ap in attr2parts[a]]
if needSplit and split:
toYield.append(v)
elif needSplit:
toYield.append(['|'.join(v)])
else:
toYield.append('|'.join(v))
if needSplit:
assert(len(toYield) == 3)
splitIndex = 0
for i in toYield[0]:
for ix, x in enumerate(toYield[1]):
for iy, y in enumerate(toYield[2]):
if attrs[0] == NONE_ATTR:
# build label from x or y parts
i = ""
if len(attr2parts[attrs[1]]) > 1:
i += attr2parts[attrs[1]][ix]
if len(attr2parts[attrs[2]]) > 1:
if i != "":
i += "|"
i += attr2parts[attrs[2]][iy]
yield [i, x, y]
splitIndex += 1
else:
yield toYield
def interpretValue(value):
try:
return parseTime(value)
except ValueError:
# use as category
return value
def isnumeric(value):
return type(value) == int or type(value) == float
def keepNumeric(d, xyIndex):
res_x = []
res_y = []
for i in range(len(d[xyIndex])):
if isnumeric(d[xyIndex][i]):
res_x.append(d[0][i])
res_y.append(d[1][i])
d[0][:] = res_x
d[1][:] = res_y
def useWildcards(labels):
for label in labels:
if "*" in label or "?" in label or ("[" in label and "]" in label):
return True
return False
def binned(value, binsize):
if binsize is not None:
return int(value / binsize) * binsize
else:
return value
def clamped(value, clamp):
if clamp is not None:
return max(clamp[0], min(clamp[1], value))
else:
return value
def countPoints(xvalues, normalize=False):
counts = defaultdict(lambda: 0)
for x in xvalues:
counts[x] += 1
xres = sorted(counts.keys())
yres = [counts[x] for x in xres]
if normalize:
total = float(sum(yres))
if total > 0:
yres = [c / total for c in yres]
return xres, yres
def makeNumeric(val):
if isnumeric(val):
return val
try:
return int(val)
except ValueError:
try:
return float(val)
except ValueError:
return val
def applyTicks(d, xyIndex, ticksFile):
offsets, labels = sumolib.visualization.helpers.parseTicks(ticksFile)
l2o = dict(zip(labels, offsets))
if useWildcards(labels):
def getOffset(val):
for label in labels:
if fnmatch.fnmatch(val, label):
return l2o[label]
return None
else:
def getOffset(val):
return l2o.get(val)
res_x = []
res_y = []
for i in range(len(d[xyIndex])):
val = d[xyIndex][i]
o = getOffset(val)
if o is not None:
point = [d[0][i], d[1][i]]
point[xyIndex] = o
res_x.append(point[0])
res_y.append(point[1])
d[0][:] = res_x
d[1][:] = res_y
def main(options):
dataStream = getDataStream(options)
fig = plt.figure(figsize=(14, 9), dpi=100)
fig.canvas.mpl_connect('pick_event', onpick)
shortFileNames = short_names(options.files, False)
titleFileNames = short_names(options.files, True)
plt.xlabel(options.xlabel)
plt.ylabel(options.ylabel)
plt.title(','.join(titleFileNames) if options.label is None else options.label)
xdata = 0
ydata = 1
data = defaultdict(lambda: list(([] for i in range(2))))
numericXCount = 0
stringXCount = 0
numericYCount = 0
stringYCount = 0
for fileIndex, datafile in enumerate(options.files):
totalIDs = 0
filteredIDs = 0
for dataID, x, y in dataStream(datafile):
totalIDs += 1
if options.filterIDs:
# Try for regular strings.
flag1 = dataID not in options.filterIDs
# Try for wildcards.
flag2 = False
for filterID in options.filterIDs:
if '*' in filterID:
if not fnmatch.fnmatch(dataID, filterID):
continue
flag2 = True
if flag1 and not flag2:
continue
if len(options.files) > 1 and not options.joinFiles:
suffix = shortFileNames[fileIndex]
if len(suffix) > 0:
dataID = str(dataID) + "#" + suffix
x = interpretValue(x)
y = interpretValue(y)
if isnumeric(x):
numericXCount += 1
x *= options.xfactor
x = clamped(x, options.xclampRange)
x = binned(x, options.xbin)
else:
stringXCount += 1
if isnumeric(y):
numericYCount += 1
y *= options.yfactor
y = clamped(y, options.yclampRange)
y = binned(y, options.ybin)
else:
stringYCount += 1
data[dataID][xdata].append(x)
data[dataID][ydata].append(y)
filteredIDs += 1
if totalIDs == 0 or filteredIDs == 0 or options.verbose:
print("Found %s datapoints in %s and kept %s" % (totalIDs, datafile, filteredIDs))
if filteredIDs == 0:
sys.exit()
minY = uMax
maxY = uMin
minX = uMax
maxX = uMin
barOffset = 0
barWidth = options.barbin / (len(data.items()) + 1)
for dataID, d in data.items():
if numericXCount > 0 and stringXCount > 0:
keepNumeric(d, xdata)
if numericYCount > 0 and stringYCount > 0:
keepNumeric(d, ydata)
if options.xattr == RANK_ATTR:
d[ydata].sort(reverse=True)
d[xdata] = list(range(len(d[xdata])))
if options.yattr == RANK_ATTR:
d[xdata].sort(reverse=True)
d[ydata] = list(range(len(d[ydata])))
if options.xattr == COUNT_ATTR:
d[ydata], d[xdata] = countPoints(d[ydata])
if options.yattr == COUNT_ATTR:
d[xdata], d[ydata] = countPoints(d[xdata])
if options.xattr == DENS_ATTR:
d[ydata], d[xdata] = countPoints(d[ydata], True)
if options.yattr == DENS_ATTR:
d[xdata], d[ydata] = countPoints(d[xdata], True)
if options.xticksFile:
applyTicks(d, xdata, options.xticksFile)
if options.yticksFile:
applyTicks(d, ydata, options.yticksFile)
xvalues = d[xdata]
yvalues = d[ydata]
if len(xvalues) == 0:
assert(len(yvalues) == 0)
continue
minY = min(minY, min(yvalues))
maxY = max(maxY, max(yvalues))
minX = min(minX, min(xvalues))
maxX = max(maxX, max(xvalues))
if not options.boxplot:
if options.barplot or options.hbarplot:
if options.barplot:
if numericXCount > 0:
center = [x + barOffset * barWidth for x in xvalues]
else:
center = [x + barOffset * barWidth for x in range(len(xvalues))]
plt.xticks(range(len(xvalues)), xvalues)
plt.bar(center, yvalues, width=barWidth, label=dataID)
else:
if numericYCount > 0:
center = [y + barOffset * barWidth for y in yvalues]
else:
center = [y + barOffset * barWidth for y in range(len(yvalues))]
plt.yticks(range(len(yvalues)), yvalues)
plt.barh(center, xvalues, height=barWidth, label=dataID)
barOffset += 1
else:
linestyle = options.linestyle
marker = options.marker
if options.scatterplot or (min(yvalues) == max(yvalues) and min(xvalues) == max(xvalues)):
linestyle = ''
if marker is None:
marker = 'o'
plt.plot(xvalues, yvalues, linestyle=linestyle, marker=marker, picker=True, label=dataID)
if options.boxplot:
labels = sorted(data.keys(), key=makeNumeric)
vertical = options.xattr == BOX_ATTR
xyIndex = ydata if vertical else xdata
boxdata = [data[dataID][xyIndex] for dataID in labels]
if vertical:
plt.xticks(range(len(labels)), labels)
else:
plt.yticks(range(len(labels)), labels)
plt.boxplot(boxdata, vert=options.xattr == BOX_ATTR)
if options.invertYAxis:
plt.axis([minX, maxX, maxY, minY])
if options.csv_output is not None:
write_csv(data, options.csv_output)
ax = fig.axes[0]
sumolib.visualization.helpers.closeFigure(fig, ax, options)
if __name__ == "__main__":
main(getOptions())
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