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Source: swarm-cluster
Maintainer: Debian Med Packaging Team <debian-med-packaging@lists.alioth.debian.org>
Uploaders: Tim Booth <tbooth@ceh.ac.uk>,
Andreas Tille <tille@debian.org>
Section: science
Priority: optional
Build-Depends: debhelper (>= 10),
man-db,
python-markdown
Standards-Version: 3.9.8
Vcs-Browser: https://anonscm.debian.org/cgit/debian-med/swarm-cluster.git
Vcs-Git: https://anonscm.debian.org/git/debian-med/swarm-cluster.git
Homepage: https://github.com/torognes/swarm
Package: swarm
Architecture: amd64
Depends: ${shlibs:Depends},
${misc:Depends}
Recommends: python
Description: robust and fast clustering method for amplicon-based studies
The purpose of swarm is to provide a novel clustering algorithm to handle large
sets of amplicons. Traditional clustering algorithms results are strongly
input-order dependent, and rely on an arbitrary global clustering threshold.
swarm results are resilient to input-order changes and rely on a small local
linking threshold d, the maximum number of differences between two amplicons.
swarm forms stable high-resolution clusters, with a high yield of biological
information.
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