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Source: t-coffee
Maintainer: Debian Med Packaging Team <debian-med-packaging@lists.alioth.debian.org>
Uploaders: Steffen Moeller <moeller@debian.org>,
Andreas Tille <tille@debian.org>
Section: science
Priority: optional
Build-Depends: debhelper (>= 12~)
Standards-Version: 4.3.0
Vcs-Browser: https://salsa.debian.org/med-team/t-coffee
Vcs-Git: https://salsa.debian.org/med-team/t-coffee.git
Homepage: http://www.tcoffee.org/Projects_home_page/t_coffee_home_page.html
Package: t-coffee
Architecture: any
Depends: ${shlibs:Depends},
${misc:Depends}
Recommends: amap-align,
clustalo,
clustalw,
dialign-tx,
fsa,
kalign,
libsoap-lite-perl,
libxml-simple-perl,
mafft,
muscle,
mustang,
ncbi-blast+,
poa,
prank,
probcons,
proda,
tm-align
Suggests: boxshade,
seaview,
t-coffee-examples
Description: Multiple Sequence Alignment
T-Coffee is a multiple sequence alignment package. Given a set of
sequences (Proteins or DNA), T-Coffee generates a multiple sequence
alignment. Version 2.00 and higher can mix sequences and structures.
.
T-Coffee allows the combination of a collection of multiple/pairwise,
global or local alignments into a single model. It can also
estimate the level of consistency of each position within the new
alignment with the rest of the alignments. See the pre-print for more
information
.
T-Coffee has a special called M-Coffee that makes it possible to combine the
output of many multiple sequence alignment packages. In its published version,
it uses MUSCLE, PROBCONS, POA, DiAlign-TS, MAFFT, Clustal W, PCMA and
T-Coffee. A special version has been made for Debian, DM-Coffee, that uses
only free software by replacing Clustal W by Kalign. Using the 8 Methods of
M-Coffee can sometimes be a bit heavy. You can use a subset of your favorite
methods if you prefer.
Package: t-coffee-examples
Architecture: all
Depends: ${misc:Depends}
Recommends: t-coffee
Description: annotated examples for the use of T-Coffee
To help increasing the proficiency in the use of T-Coffee, this
package provides examples for input sequences and their proper
alignment.
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