File: sample_aln2.msf

package info (click to toggle)
t-coffee 2.50-1
  • links: PTS
  • area: main
  • in suites: etch, etch-m68k
  • size: 4,376 kB
  • ctags: 2,314
  • sloc: ansic: 45,500; perl: 274; makefile: 54
file content (48 lines) | stat: -rw-r--r-- 1,931 bytes parent folder | download | duplicates (9)
1
2
3
4
5
6
7
8
9
10
11
12
13
14
15
16
17
18
19
20
21
22
23
24
25
26
27
28
29
30
31
32
33
34
35
36
37
38
39
40
41
42
43
44
45
46
47
48
PileUp



   MSF:  184  Type: P    Check:  9231   .. 

 Name: 1cms oo  Len:  184  Check:  5502  Weight:  1.000
 Name: 4pep oo  Len:  184  Check:  5357  Weight:  1.000
 Name: 4ape oo  Len:  184  Check:  4513  Weight:  1.000
 Name: 3app oo  Len:  184  Check:  1567  Weight:  1.000
 Name: 2apr oo  Len:  184  Check:  9231  Weight:  1.000
 Name: 1cms_1 oo  Len:  184  Check:  3061  Weight:  1.000

//



1cms        ..GEVASVPL TNYLDSQYFG KIYLGTPPQE FTVLFDTGSS DFWVPSIYCK 
4pep        ....IGDEPL ENYLDTEYFG TIGIGTPAQD FTVIFDTGSS NLWVPSVYCS 
4ape        .STGSATTTP IDSLDDAYIT PVQIGTPAQT LNLDFDTGSS DLWVFSSETT 
3app        AASGVATNTP TAN.DEEYIT PVTIG..GTT LNLNFDTGSA DLWVFSTELP 
2apr        AGVGTVPMTD YGN.DIEYYG QVTIGTPGKK FNLDFDTGSS DLWIASTLCT 
1cms_1      .......... .......YTG SLHWVPVTVQ QYWQFTVDS. ..VTISGVVV 


1cms        SNACKNHQRF DPR.KSSTFQ NLGKPLSIHY GTG.SMQGIL GYDTVTVSNI 
4pep        SLACSDHNQF NPD.DSSTFE ATSQELSITY GTG.SMTGIL GYDTVQVGGI 
4ape        ASEVDGQTIY TPSKSTTAKL LSGATWSISY GDGSSSSGDV YTDTVSVGGL 
3app        ASQQSGHSVY NP..SATGKE LSGYTWSISY GDGSSASGNV FTDSVTVGGV 
2apr        NCG.SGQTKY DPN.QSSTYQ ADGRTWSISY GDGSSASGIL AKDNVNLGGL 
1cms_1      ACEGGCQAIL DTG.TSKLVG PSSDILNIQQ AIG.ATQNQY GEFDIDCDNL 


1cms        VDIQQTVGLS TQEPGDVFTY AEFDGILGMA YPSLASEY.. .SIPVFDNMM 
4pep        SDTNQIFGLS ETEPGSFLYY APFDGILGLA YPSISASG.. .ATPVFDNLW 
4ape        TVTGQAVESA KKVSSSFTED STIDGLLGLA FSTLNTVSPT QQKTFFDNAK 
3app        TAHGQAVQAA QQISAQFQQD TNNDGLLGLA FSSINTVQPQ SQTTFFDTVK 
2apr        LIKGQTIELA KREAASFASG PN.DGLLGLG FDTITTVR.. GVKTPMDNLI 
1cms_1      SYMPTVVFEI NGKMYPLTPS AYTSQDQGFC TSGFQSEN.. ....HSQKWI 


1cms        NRHLVAQDLF SVYMDRNGQE ..SMLTLGAI DPSY
4pep        DQGLVSQDLF SVYLSSNDDS G.SVVLLGGI DSSY
4ape        AS..LDSPVF TADLGYHAPG ...TYNFGFI DTTA
3app        SS..LAQPLF AVALKHQQPG ...VYDFGFI DSSK
2apr        SQGLISRPIF GVYLGKAKNG GGGEYIFGGY DSTK
1cms_1      LGDVFIREYY SVFDRANNLV G....LAKAI ....