File: sample_profile2.aln

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t-coffee 8.84-1
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CLUSTAL FORMAT for T-COFFEE Version_2.36, CPU=0.26 sec, SCORE=58, Nseq=2, Len=180

sequence4       AGVGTVPMTDYGNDIEYYGQVTIGTPGKKFNLDFDTGSSDLWIASTLCTN
4pep            --IGDEPLENYL-DTEYFGTIGIGTPAQDFTVIFDTGSSNLWVPSVYCSS
                  :*  *: :*  * **:* : ****.:.*.: ******:**:.*. *:.

sequence4       CG-SGQTKYDPNQSSTYQADGRTWSISYGDGSSASGILAKDNVNLGGLLI
4pep            LACSDHNQFNPDDSSTFEATSQELSITYGTGS-MTGILGYDTVQVGGISD
                 . *.:.:::*::***::* .:  **:** **  :***. *.*::**:  

sequence4       KGQTIELAKREAASFAS-GPNDGLLGLGFDTITTVRGVKTPMDNLISQGL
4pep            TNQIFGLSETEPGSFLYYAPFDGILGLAYPSISA-SGATPVFDNLWDQGL
                ..* : *:: *..**   .* **:***.: :*::  *... :*** .***

sequence4       ISRPIFGVYLGKAKNGGGGEYIFGGYDSTK
4pep            VSQDLFSVYLS-SNDDSGSVVLLGGIDSSY
                :*: :*.***. :::..*.  ::** **: