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Release 0.2.4 (10 April, 2011)
~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
Notable changes:
* Give an error if the index file is older than the data file.
* Avoid a segfault given flawed input.
* Added Python APIs contributed by Hyeshik Chang. The new APIs do not bind to
the dynamic library and are reported to be faster. Pysam also comes with a
tabix binding.
* Added option "-r" for efficient header replacement.
* Added BED support.
* Synchronized the BGZF library between tabix and samtools.
(0.2.4: 10 April 2011, r949)
Beta Release 0.2.3 (8 December, 2010)
~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
Notable changes:
* Fixed a minor bug where the first record in a headerless file may be
missed.
* Added an option to print header lines.
* Fixed a rare bug which may occasionally happen when retrieving data
from a region without any records.
* Enhanced error reporting.
* Fixed a bug in bgzip which may delete the original file even if not
intended.
(0.2.3: 8 December 2010, r876)
Beta Release 0.2.2 (28 June, 2010)
~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
Notable changes:
* Dropped the VCF3 support. Added VCF4 support.
* Avoided the function name collision with samtools.
(0.2.2: 28 June 2010, r603)
Beta Release 0.2.1 (3 June, 2010)
~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
Notable changes:
* Allow shared library to be compiled. Added python binding to the
shared library.
(0.2.1: 3 June 2010, r582)
Beta Release 0.2.0 (11 May, 2010)
~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
Notable changes:
* Fixed an issue for random access given an interval end larger than
2^29.
* Updated the Java binding.
* Added a Perl module using XS.
* Improved the C APIs.
(0.2.0: 11 May 2010, r574)
Beta Release 0.1.6 (9 May, 2010)
~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
Notable changes:
* Improved backward compatibility. Release 0.1.5 does not work with the
buggy index file generated by 0.1.2.
* Fixed a bug in building linear index. The bug does not affect the
results, only affects efficiency in rare cases.
* Reduced the number of seek calls given an index generated by old
version of tabix.
* Added new APIs for retrieving data via an iterator. The old callback
APIs are not changed, although internally it uses iterator to
retrieve data.
I am trying to freeze tabix. I just hope I am committing new bugs.
(0.1.6: 9 May 2010, r563)
Beta Release 0.1.5 (5 May, 2010)
~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
Notable changes:
* Clarified that tabix is released under MIT/X11.
* Improved the robustness of indexing and retrieval.
* Reduced the number of seek calls when the specified region starts
from a 16kb block with no data. The index format is the same, but the
content is changed a little.
(0.1.5: 5 May 2010, r560)
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