File: test-example

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tantan 13-4
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file content (27 lines) | stat: -rwxr-xr-x 445 bytes parent folder | download | duplicates (5) 
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#!/bin/sh
# autopkgtest check: Run small test data through tantan
# Author: Sascha Steinbiss <sascha@steinbiss.name>
set -e

ORIGDIR=$(pwd)
DATADIR=$ORIGDIR/debian/tests/
WORKDIR=$(mktemp -d)

trap "rm -rf $WORKDIR" 0 INT QUIT ABRT PIPE TERM
cd $WORKDIR

tantan < $DATADIR/nuc.fasta > 1
tantan $DATADIR/nuc.fasta > 2

[ -s 1 ]
[ -s 2 ]

diff 1 2

tantan -p < $DATADIR/prot.fasta > 1
tantan -p $DATADIR/prot.fasta > 2

[ -s 1 ]
[ -s 2 ]

diff 1 2