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<a name="Concepts-index-1"></a>
<h1 class="unnumbered"> Concepts index </h1>
<table><tr><th valign="top">Jump to: </th><td><a href="#Concepts-index-1_cp_symbol-1" class="summary-letter"><b>$</b></a>
<br>
<a href="#Concepts-index-1_cp_letter-A" class="summary-letter"><b>A</b></a>
<a href="#Concepts-index-1_cp_letter-B" class="summary-letter"><b>B</b></a>
<a href="#Concepts-index-1_cp_letter-C" class="summary-letter"><b>C</b></a>
<a href="#Concepts-index-1_cp_letter-D" class="summary-letter"><b>D</b></a>
<a href="#Concepts-index-1_cp_letter-E" class="summary-letter"><b>E</b></a>
<a href="#Concepts-index-1_cp_letter-F" class="summary-letter"><b>F</b></a>
<a href="#Concepts-index-1_cp_letter-G" class="summary-letter"><b>G</b></a>
<a href="#Concepts-index-1_cp_letter-H" class="summary-letter"><b>H</b></a>
<a href="#Concepts-index-1_cp_letter-I" class="summary-letter"><b>I</b></a>
<a href="#Concepts-index-1_cp_letter-K" class="summary-letter"><b>K</b></a>
<a href="#Concepts-index-1_cp_letter-L" class="summary-letter"><b>L</b></a>
<a href="#Concepts-index-1_cp_letter-M" class="summary-letter"><b>M</b></a>
<a href="#Concepts-index-1_cp_letter-O" class="summary-letter"><b>O</b></a>
<a href="#Concepts-index-1_cp_letter-P" class="summary-letter"><b>P</b></a>
<a href="#Concepts-index-1_cp_letter-R" class="summary-letter"><b>R</b></a>
<a href="#Concepts-index-1_cp_letter-S" class="summary-letter"><b>S</b></a>
<a href="mini_ker_36.html#index_split-0_cp_letter-T" class="summary-letter"><b>T</b></a>
<a href="mini_ker_36.html#index_split-0_cp_letter-U" class="summary-letter"><b>U</b></a>
<a href="mini_ker_36.html#index_split-0_cp_letter-V" class="summary-letter"><b>V</b></a>
<a href="mini_ker_36.html#index_split-0_cp_letter-Z" class="summary-letter"><b>Z</b></a>
</td></tr></table>
<table border="0" class="index-cp">
<tr><td></td><th align="left">Index Entry</th><th align="left"> Section</th></tr>
<tr><td colspan="3"> <hr></td></tr>
<tr><th><a name="Concepts-index-1_cp_symbol-1">$</a></th><td></td><td></td></tr>
<tr><td></td><td valign="top"><a href="Setting-and-running-a-model.html#index-_0024dimetaphi">‘<tt>$dimetaphi</tt>’</a></td><td valign="top"><a href="Setting-and-running-a-model.html#Setting-up-a-model-with-cmz">2.3.1 Setup a model and compile with cmz</a></td></tr>
<tr><td></td><td valign="top"><a href="Setting-and-running-a-model.html#index-_0024zinit">‘<tt>$zinit</tt>’</a></td><td valign="top"><a href="Setting-and-running-a-model.html#Setting-up-a-model-with-cmz">2.3.1 Setup a model and compile with cmz</a></td></tr>
<tr><td colspan="3"> <hr></td></tr>
<tr><th><a name="Concepts-index-1_cp_letter-A">A</a></th><td></td><td></td></tr>
<tr><td></td><td valign="top"><a href="Adjoint-model-and-optimisation.html#index-adjoint">adjoint</a></td><td valign="top"><a href="Adjoint-model-and-optimisation.html#Overview-of-optimisation-with-Miniker">4.2.1 Overview of optimisation with Miniker</a></td></tr>
<tr><td></td><td valign="top"><a href="Setting-and-running-a-model.html#index-aspha_002edata">‘<tt>aspha.data</tt>’</a></td><td valign="top"><a href="Setting-and-running-a-model.html#Simulation-and-output">2.3.3 Running a simulation and using the output</a></td></tr>
<tr><td></td><td valign="top"><a href="Generalized-TLS.html#index-aspha_002edata_002c-GTLS">‘<tt>aspha.data</tt>’, GTLS</a></td><td valign="top"><a href="Generalized-TLS.html#GTLS-run-and-output">4.6.3 Generalized tangent linear system analysis run and output</a></td></tr>
<tr><td></td><td valign="top"><a href="Stability-of-fastest-modes.html#index-aspha_002edata_002c-SVD">‘<tt>aspha.data</tt>’, SVD</a></td><td valign="top"><a href="Stability-of-fastest-modes.html#SVD-run-and-output">4.5.3 Singular Value Decomposition run and output</a></td></tr>
<tr><td colspan="3"> <hr></td></tr>
<tr><th><a name="Concepts-index-1_cp_letter-B">B</a></th><td></td><td></td></tr>
<tr><td></td><td valign="top"><a href="Feedback-gain.html#index-Borel-sweep">Borel sweep</a></td><td valign="top"><a href="Feedback-gain.html#Feedback-gain">4.4 Feedback gain</a></td></tr>
<tr><td></td><td valign="top"><a href="Feedback-gain.html#index-Borel-sweep-graphics">Borel sweep graphics</a></td><td valign="top"><a href="Feedback-gain.html#Borel-sweep-results">4.4.2 Borel sweep results</a></td></tr>
<tr><td></td><td valign="top"><a href="Feedback-gain.html#index-Borel-sweep-results">Borel sweep results</a></td><td valign="top"><a href="Feedback-gain.html#Borel-sweep-results">4.4.2 Borel sweep results</a></td></tr>
<tr><td colspan="3"> <hr></td></tr>
<tr><th><a name="Concepts-index-1_cp_letter-C">C</a></th><td></td><td></td></tr>
<tr><td></td><td valign="top"><a href="Introduction.html#index-cells">cells</a></td><td valign="top"><a href="Introduction.html#Introduction">Introduction</a></td></tr>
<tr><td></td><td valign="top"><a href="Common-requisites.html#index-cernlib">cernlib</a></td><td valign="top"><a href="Common-requisites.html#Common-requisites">A.2 Common requisites</a></td></tr>
<tr><td></td><td valign="top"><a href="Adjoint-model-and-optimisation.html#index-command-law">command law</a></td><td valign="top"><a href="Adjoint-model-and-optimisation.html#Control-laws">4.2.2 Control laws</a></td></tr>
<tr><td></td><td valign="top"><a href="Setting-and-running-a-model.html#index-compilation">compilation</a></td><td valign="top"><a href="Setting-and-running-a-model.html#Setting-up-a-model-with-make">2.3.2 Setup a model and compile with make</a></td></tr>
<tr><td></td><td valign="top"><a href="Miniker-with-make.html#index-configuration-of-source">configuration of source</a></td><td valign="top"><a href="Miniker-with-make.html#Configuration">A.4.2 Configuration</a></td></tr>
<tr><td></td><td valign="top"><a href="Controlling-the-run.html#index-controlling-the-run">controlling the run</a></td><td valign="top"><a href="Controlling-the-run.html#Controlling-the-run">2.4 Controlling the run</a></td></tr>
<tr><td colspan="3"> <hr></td></tr>
<tr><th><a name="Concepts-index-1_cp_letter-D">D</a></th><td></td><td></td></tr>
<tr><td></td><td valign="top"><a href="Observations-and-data.html#index-data_002edata">‘<tt>data.data</tt>’</a></td><td valign="top"><a href="Observations-and-data.html#Data">3.8.2 Data</a></td></tr>
<tr><td></td><td valign="top"><a href="Kalman-filter.html#index-data_002edata-1">‘<tt>data.data</tt>’</a></td><td valign="top"><a href="Kalman-filter.html#Kalman-filter-results">4.3.2.2 Kalman filter results</a></td></tr>
<tr><td></td><td valign="top"><a href="Explicit-model-size.html#index-dimetaphi">dimetaphi</a></td><td valign="top"><a href="Explicit-model-size.html#Size-sequence">3.9.1 The explicit size sequence</a></td></tr>
<tr><td></td><td valign="top"><a href="Explicit-model-size.html#index-dimetaphi-1">‘<tt>dimetaphi</tt>’</a></td><td valign="top"><a href="Explicit-model-size.html#Size-sequence">3.9.1 The explicit size sequence</a></td></tr>
<tr><td></td><td valign="top"><a href="Kalman-filter.html#index-dimetaphi_002c-Kalman-filter">‘<tt>dimetaphi</tt>’, Kalman filter</a></td><td valign="top"><a href="Kalman-filter.html#Kalman-filter-vectors-dimensions">4.3.1.1 Kalman filter vectors dimensions</a></td></tr>
<tr><td></td><td valign="top"><a href="1D-gridded-model.html#index-down-node">down node</a></td><td valign="top"><a href="1D-gridded-model.html#g_t1D-gridded-model">3.3 Describing 1D gridded model</a></td></tr>
<tr><td></td><td valign="top"><a href="Setting-and-running-a-model.html#index-dres_002edata">‘<tt>dres.data</tt>’</a></td><td valign="top"><a href="Setting-and-running-a-model.html#Simulation-and-output">2.3.3 Running a simulation and using the output</a></td></tr>
<tr><td></td><td valign="top"><a href="mini_ker_fot.html#index-dres_002edata-1">‘<tt>dres.data</tt>’</a></td><td valign="top"><a href="mini_ker_fot.html#SEC_Foot"></a></td></tr>
<tr><td></td><td valign="top"><a href="Generalized-TLS.html#index-dres_002edata_002c-GTLS">‘<tt>dres.data</tt>’, GTLS</a></td><td valign="top"><a href="Generalized-TLS.html#GTLS-run-and-output">4.6.3 Generalized tangent linear system analysis run and output</a></td></tr>
<tr><td colspan="3"> <hr></td></tr>
<tr><th><a name="Concepts-index-1_cp_letter-E">E</a></th><td></td><td></td></tr>
<tr><td></td><td valign="top"><a href="1D-gridded-model.html#index-equations_002c-grid">equations, grid</a></td><td valign="top"><a href="1D-gridded-model.html#Grid-node-equations">Grid node equations</a></td></tr>
<tr><td></td><td valign="top"><a href="Kalman-filter.html#index-error-vector-dimension">error vector dimension</a></td><td valign="top"><a href="Kalman-filter.html#Kalman-filter-vectors-dimensions">4.3.1.1 Kalman filter vectors dimensions</a></td></tr>
<tr><td colspan="3"> <hr></td></tr>
<tr><th><a name="Concepts-index-1_cp_letter-F">F</a></th><td></td><td></td></tr>
<tr><td></td><td valign="top"><a href="GNU-Free-Documentation-License.html#index-FDL_002c-GNU-Free-Documentation-License">FDL, GNU Free Documentation License</a></td><td valign="top"><a href="GNU-Free-Documentation-License.html#GNU-Free-Documentation-License">C.1 GNU Free Documentation License</a></td></tr>
<tr><td></td><td valign="top"><a href="Selecting-features.html#index-feature-setting">feature setting</a></td><td valign="top"><a href="Selecting-features.html#Selecting-features">3.1 Overview of additional features setting</a></td></tr>
<tr><td></td><td valign="top"><a href="Feedback-gain.html#index-Feedback-gain">Feedback gain</a></td><td valign="top"><a href="Feedback-gain.html#Feedback-gain">4.4 Feedback gain</a></td></tr>
<tr><td></td><td valign="top"><a href="Controlling-the-run.html#index-ffl-_0028linearity-test_0029"><code>ffl</code> (linearity test)</a></td><td valign="top"><a href="Controlling-the-run.html#End-of-time-step">2.4.1 Executing code at the end of each time step</a></td></tr>
<tr><td></td><td valign="top"><a href="Adjoint-model-and-optimisation.html#index-final-cost">final cost</a></td><td valign="top"><a href="Adjoint-model-and-optimisation.html#Overview-of-optimisation-with-Miniker">4.2.1 Overview of optimisation with Miniker</a></td></tr>
<tr><td colspan="3"> <hr></td></tr>
<tr><th><a name="Concepts-index-1_cp_letter-G">G</a></th><td></td><td></td></tr>
<tr><td></td><td valign="top"><a href="Generalized-TLS.html#index-Generalized-linear-tangent-system">Generalized linear tangent system</a></td><td valign="top"><a href="Generalized-TLS.html#Generalized-TLS">4.6 Generalized linear tangent system analysis</a></td></tr>
<tr><td></td><td valign="top"><a href="Adjoint-model-and-optimisation.html#index-gradpj_002edata">‘<tt>gradpj.data</tt>’</a></td><td valign="top"><a href="Adjoint-model-and-optimisation.html#Sensitivity-of-cost-function-to-parameters">4.2.4 Sensitivity of cost function to parameters</a></td></tr>
<tr><td></td><td valign="top"><a href="Setting-and-running-a-model.html#index-graphics">graphics</a></td><td valign="top"><a href="Setting-and-running-a-model.html#Graphics">2.3.4 Doing graphics</a></td></tr>
<tr><td></td><td valign="top"><a href="Setting-and-running-a-model.html#index-graphics-with-gnuplot">graphics with <code>gnuplot</code></a></td><td valign="top"><a href="Setting-and-running-a-model.html#Graphics">2.3.4 Doing graphics</a></td></tr>
<tr><td></td><td valign="top"><a href="Setting-and-running-a-model.html#index-graphics-with-PAW">graphics with <code>PAW</code></a></td><td valign="top"><a href="Setting-and-running-a-model.html#Graphics">2.3.4 Doing graphics</a></td></tr>
<tr><td></td><td valign="top"><a href="Feedback-gain.html#index-graphics_002c-Borel-sweep">graphics, Borel sweep</a></td><td valign="top"><a href="Feedback-gain.html#Borel-sweep-results">4.4.2 Borel sweep results</a></td></tr>
<tr><td></td><td valign="top"><a href="Generalized-TLS.html#index-GTLS">GTLS</a></td><td valign="top"><a href="Generalized-TLS.html#Generalized-TLS">4.6 Generalized linear tangent system analysis</a></td></tr>
<tr><td></td><td valign="top"><a href="Generalized-TLS.html#index-GTLS-output">GTLS output</a></td><td valign="top"><a href="Generalized-TLS.html#GTLS-run-and-output">4.6.3 Generalized tangent linear system analysis run and output</a></td></tr>
<tr><td></td><td valign="top"><a href="Generalized-TLS.html#index-GTLS-run">GTLS run</a></td><td valign="top"><a href="Generalized-TLS.html#GTLS-run-and-output">4.6.3 Generalized tangent linear system analysis run and output</a></td></tr>
<tr><td colspan="3"> <hr></td></tr>
<tr><th><a name="Concepts-index-1_cp_letter-H">H</a></th><td></td><td></td></tr>
<tr><td></td><td valign="top"><a href="Rule-of-programming-non-continuous-models.html#index-Heaviside-function">Heaviside function</a></td><td valign="top"><a href="Rule-of-programming-non-continuous-models.html#Rule-of-programming-non-continuous-models">3.6 Rule of programming non continuous models</a></td></tr>
<tr><td colspan="3"> <hr></td></tr>
<tr><th><a name="Concepts-index-1_cp_letter-I">I</a></th><td></td><td></td></tr>
<tr><td></td><td valign="top"><a href="Kalman-filter.html#index-initial-variance_002dcovariance-on-states">initial variance-covariance on states</a></td><td valign="top"><a href="Kalman-filter.html#Initial-variance_002dcovariance-matrix-on-the-state">Initial variance-covariance matrix on the state</a></td></tr>
<tr><td></td><td valign="top"><a href="Miniker-with-make.html#index-installation-with-make">installation with make</a></td><td valign="top"><a href="Miniker-with-make.html#Installation-with-make">A.4.3 Installation with make</a></td></tr>
<tr><td></td><td valign="top"><a href="Adjoint-model-and-optimisation.html#index-integrand-cost">integrand cost</a></td><td valign="top"><a href="Adjoint-model-and-optimisation.html#Overview-of-optimisation-with-Miniker">4.2.1 Overview of optimisation with Miniker</a></td></tr>
<tr><td colspan="3"> <hr></td></tr>
<tr><th><a name="Concepts-index-1_cp_letter-K">K</a></th><td></td><td></td></tr>
<tr><td></td><td valign="top"><a href="Kalman-filter.html#index-Kalman-filter">Kalman filter</a></td><td valign="top"><a href="Kalman-filter.html#Kalman-filter">4.3 Kalman filter</a></td></tr>
<tr><td></td><td valign="top"><a href="Kalman-filter.html#index-Kalman-filter-output">Kalman filter output</a></td><td valign="top"><a href="Kalman-filter.html#Kalman-filter-results">4.3.2.2 Kalman filter results</a></td></tr>
<tr><td></td><td valign="top"><a href="Kalman-filter.html#index-Kalman-filter-results">Kalman filter results</a></td><td valign="top"><a href="Kalman-filter.html#Kalman-filter-results">4.3.2.2 Kalman filter results</a></td></tr>
<tr><td colspan="3"> <hr></td></tr>
<tr><th><a name="Concepts-index-1_cp_letter-L">L</a></th><td></td><td></td></tr>
<tr><td></td><td valign="top"><a href="Common-requisites.html#index-lapack">lapack</a></td><td valign="top"><a href="Common-requisites.html#Common-requisites">A.2 Common requisites</a></td></tr>
<tr><td></td><td valign="top"><a href="1D-gridded-model.html#index-limiting-conditions">limiting conditions</a></td><td valign="top"><a href="1D-gridded-model.html#Limiting-conditions">Limiting conditions</a></td></tr>
<tr><td></td><td valign="top"><a href="Controlling-the-run.html#index-linearity-test">linearity test</a></td><td valign="top"><a href="Controlling-the-run.html#End-of-time-step">2.4.1 Executing code at the end of each time step</a></td></tr>
<tr><td></td><td valign="top"><a href="Selecting-features.html#index-logical-flags">logical flags</a></td><td valign="top"><a href="Selecting-features.html#Selecting-features">3.1 Overview of additional features setting</a></td></tr>
<tr><td></td><td valign="top"><a href="Generalized-TLS.html#index-Lyapunov-exponents">Lyapunov exponents</a></td><td valign="top"><a href="Generalized-TLS.html#Generalized-TLS">4.6 Generalized linear tangent system analysis</a></td></tr>
<tr><td colspan="3"> <hr></td></tr>
<tr><th><a name="Concepts-index-1_cp_letter-M">M</a></th><td></td><td></td></tr>
<tr><td></td><td valign="top"><a href="Make-variables.html#index-Makefile_002eminiker">‘<tt>Makefile.miniker</tt>’</a></td><td valign="top"><a href="Make-variables.html#Make-variables">5.1 Make variables</a></td></tr>
<tr><td></td><td valign="top"><a href="Stability-of-fastest-modes.html#index-Makefile_002esltc">‘<tt>Makefile.sltc</tt>’</a></td><td valign="top"><a href="Stability-of-fastest-modes.html#SVD-with-make">4.5.2 Singular Value Decomposition with make</a></td></tr>
<tr><td></td><td valign="top"><a href="Generalized-TLS.html#index-Makefile_002esltcirc">‘<tt>Makefile.sltcirc</tt>’</a></td><td valign="top"><a href="Generalized-TLS.html#GTLS-with-make">4.6.2 Generalized tangent linear system with make</a></td></tr>
<tr><td></td><td valign="top"><a href="Miniker-with-cmz.html#index-mini_005fker_002ecmz">‘<tt>mini_ker.cmz</tt>’</a></td><td valign="top"><a href="Miniker-with-cmz.html#Miniker-with-cmz">A.3 Miniker with cmz</a></td></tr>
<tr><td></td><td valign="top"><a href="Setting-and-running-a-model.html#index-mod"><code>mod</code></a></td><td valign="top"><a href="Setting-and-running-a-model.html#Setting-up-a-model-with-cmz">2.3.1 Setup a model and compile with cmz</a></td></tr>
<tr><td></td><td valign="top"><a href="Explicit-model-size.html#index-model-equations">model equations</a></td><td valign="top"><a href="Explicit-model-size.html#Model-with-explicit-size">3.9.2 Entering the model equations, with explicit sizes</a></td></tr>
<tr><td></td><td valign="top"><a href="Explicit-model-size.html#index-model-size">model size</a></td><td valign="top"><a href="Explicit-model-size.html#Size-sequence">3.9.1 The explicit size sequence</a></td></tr>
<tr><td></td><td valign="top"><a href="Setting-and-running-a-model.html#index-Model_002ehlp">‘<tt>Model.hlp</tt>’</a></td><td valign="top"><a href="Setting-and-running-a-model.html#Simulation-and-output">2.3.3 Running a simulation and using the output</a></td></tr>
<tr><td></td><td valign="top"><a href="Introduction.html#index-mortran">mortran</a></td><td valign="top"><a href="Introduction.html#Introduction">Introduction</a></td></tr>
<tr><td></td><td valign="top"><a href="A-model-description.html#index-mortran-1">mortran</a></td><td valign="top"><a href="A-model-description.html#A-note-about-mortran-and-cmz-directives">2.2.1 All you need to know about mortran and cmz directives</a></td></tr>
<tr><td></td><td valign="top"><a href="Miniker-with-make.html#index-mortran_002c-with-make"><code>mortran</code>, with make</a></td><td valign="top"><a href="Miniker-with-make.html#Additional-requirements">A.4.1 Additional requirements for Miniker with make</a></td></tr>
<tr><td colspan="3"> <hr></td></tr>
<tr><th><a name="Concepts-index-1_cp_letter-O">O</a></th><td></td><td></td></tr>
<tr><td></td><td valign="top"><a href="Observations-and-data.html#index-obs_002edata">‘<tt>obs.data</tt>’</a></td><td valign="top"><a href="Observations-and-data.html#Observations">3.8.1 Observations</a></td></tr>
<tr><td></td><td valign="top"><a href="Observations-and-data.html#index-observation-function">observation function</a></td><td valign="top"><a href="Observations-and-data.html#Observations">3.8.1 Observations</a></td></tr>
<tr><td></td><td valign="top"><a href="Kalman-filter.html#index-observations">observations</a></td><td valign="top"><a href="Kalman-filter.html#Error-and-observation-matrices">4.3.1.2 Error and observation matrices</a></td></tr>
<tr><td></td><td valign="top"><a href="Kalman-filter.html#index-observations_002c-general">observations, general</a></td><td valign="top"><a href="Kalman-filter.html#Kalman-filter">4.3 Kalman filter</a></td></tr>
<tr><td></td><td valign="top"><a href="Adjoint-model-and-optimisation.html#index-optimisation">optimisation</a></td><td valign="top"><a href="Adjoint-model-and-optimisation.html#Overview-of-optimisation-with-Miniker">4.2.1 Overview of optimisation with Miniker</a></td></tr>
<tr><td></td><td valign="top"><a href="Setting-and-running-a-model.html#index-output-file">output file</a></td><td valign="top"><a href="Setting-and-running-a-model.html#Simulation-and-output">2.3.3 Running a simulation and using the output</a></td></tr>
<tr><td></td><td valign="top"><a href="Generalized-TLS.html#index-output_002c-GTLS">output, GTLS</a></td><td valign="top"><a href="Generalized-TLS.html#GTLS-run-and-output">4.6.3 Generalized tangent linear system analysis run and output</a></td></tr>
<tr><td></td><td valign="top"><a href="Kalman-filter.html#index-output_002c-Kalman-filter">output, Kalman filter</a></td><td valign="top"><a href="Kalman-filter.html#Kalman-filter-results">4.3.2.2 Kalman filter results</a></td></tr>
<tr><td></td><td valign="top"><a href="Sensitivities.html#index-output_002c-sensitivity">output, sensitivity</a></td><td valign="top"><a href="Sensitivities.html#Sensitivities">4.1 Automatic sensitivity computation</a></td></tr>
<tr><td></td><td valign="top"><a href="Stability-of-fastest-modes.html#index-output_002c-SVD">output, SVD</a></td><td valign="top"><a href="Stability-of-fastest-modes.html#SVD-run-and-output">4.5.3 Singular Value Decomposition run and output</a></td></tr>
<tr><td colspan="3"> <hr></td></tr>
<tr><th><a name="Concepts-index-1_cp_letter-P">P</a></th><td></td><td></td></tr>
<tr><td></td><td valign="top"><a href="Controlling-the-run.html#index-printing">printing</a></td><td valign="top"><a href="Controlling-the-run.html#Controlling-the-printout-and-data-output">2.4.2 Controlling the printout and data output</a></td></tr>
<tr><td></td><td valign="top"><a href="Programming-environments.html#index-Programming-environments">Programming environments</a></td><td valign="top"><a href="Programming-environments.html#Programming-environments">A.1 Programming environments</a></td></tr>
<tr><td></td><td valign="top"><a href="Generalized-TLS.html#index-propagator">propagator</a></td><td valign="top"><a href="Generalized-TLS.html#Generalized-TLS">4.6 Generalized linear tangent system analysis</a></td></tr>
<tr><td colspan="3"> <hr></td></tr>
<tr><th><a name="Concepts-index-1_cp_letter-R">R</a></th><td></td><td></td></tr>
<tr><td></td><td valign="top"><a href="Miniker-with-make.html#index-requirements_002c-with-make">requirements, with make</a></td><td valign="top"><a href="Miniker-with-make.html#Additional-requirements">A.4.1 Additional requirements for Miniker with make</a></td></tr>
<tr><td></td><td valign="top"><a href="Setting-and-running-a-model.html#index-res_002edata">‘<tt>res.data</tt>’</a></td><td valign="top"><a href="Setting-and-running-a-model.html#Simulation-and-output">2.3.3 Running a simulation and using the output</a></td></tr>
<tr><td></td><td valign="top"><a href="Feedback-gain.html#index-results_002c-Borel-sweep">results, Borel sweep</a></td><td valign="top"><a href="Feedback-gain.html#Borel-sweep-results">4.4.2 Borel sweep results</a></td></tr>
<tr><td></td><td valign="top"><a href="Kalman-filter.html#index-results_002c-Kalman-filter">results, Kalman filter</a></td><td valign="top"><a href="Kalman-filter.html#Kalman-filter-results">4.3.2.2 Kalman filter results</a></td></tr>
<tr><td></td><td valign="top"><a href="Generalized-TLS.html#index-run_002c-GTLS">run, GTLS</a></td><td valign="top"><a href="Generalized-TLS.html#GTLS-run-and-output">4.6.3 Generalized tangent linear system analysis run and output</a></td></tr>
<tr><td></td><td valign="top"><a href="Stability-of-fastest-modes.html#index-run_002c-SVD">run, SVD</a></td><td valign="top"><a href="Stability-of-fastest-modes.html#SVD-run-and-output">4.5.3 Singular Value Decomposition run and output</a></td></tr>
<tr><td></td><td valign="top"><a href="Setting-and-running-a-model.html#index-running-model">running model</a></td><td valign="top"><a href="Setting-and-running-a-model.html#Simulation-and-output">2.3.3 Running a simulation and using the output</a></td></tr>
<tr><td colspan="3"> <hr></td></tr>
<tr><th><a name="Concepts-index-1_cp_letter-S">S</a></th><td></td><td></td></tr>
<tr><td></td><td valign="top"><a href="Selecting-features.html#index-select-flag">select flag</a></td><td valign="top"><a href="Selecting-features.html#Selecting-features">3.1 Overview of additional features setting</a></td></tr>
<tr><td></td><td valign="top"><a href="Selecting-features.html#index-selseq_002ekumac">‘<tt>selseq.kumac</tt>’</a></td><td valign="top"><a href="Selecting-features.html#Selecting-features">3.1 Overview of additional features setting</a></td></tr>
<tr><td></td><td valign="top"><a href="Miniker-with-cmz.html#index-selseq_002ekumac-1">‘<tt>selseq.kumac</tt>’</a></td><td valign="top"><a href="Miniker-with-cmz.html#Miniker-with-cmz">A.3 Miniker with cmz</a></td></tr>
<tr><td></td><td valign="top"><a href="Sensitivities.html#index-sens_002edata">‘<tt>sens.data</tt>’</a></td><td valign="top"><a href="Sensitivities.html#Sensitivities">4.1 Automatic sensitivity computation</a></td></tr>
<tr><td></td><td valign="top"><a href="Sensitivities.html#index-sensitivities">sensitivities</a></td><td valign="top"><a href="Sensitivities.html#Sensitivities">4.1 Automatic sensitivity computation</a></td></tr>
<tr><td></td><td valign="top"><a href="Sensitivities.html#index-sensitivity_002c-output">sensitivity, output</a></td><td valign="top"><a href="Sensitivities.html#Sensitivities">4.1 Automatic sensitivity computation</a></td></tr>
<tr><td></td><td valign="top"><a href="Structure-of-the-code.html#index-sequence">sequence</a></td><td valign="top"><a href="Structure-of-the-code.html#Structure-of-the-code">2.1 General structure of the code</a></td></tr>
<tr><td></td><td valign="top"><a href="A-model-with-Miniker.html#index-sequences">sequences</a></td><td valign="top"><a href="A-model-with-Miniker.html#A-model-with-Miniker">2. Miniker model programming</a></td></tr>
<tr><td></td><td valign="top"><a href="Sensitivities.html#index-sigma_002edata">‘<tt>sigma.data</tt>’</a></td><td valign="top"><a href="Sensitivities.html#Sensitivities">4.1 Automatic sensitivity computation</a></td></tr>
<tr><td></td><td valign="top"><a href="Stability-of-fastest-modes.html#index-Singular-Value-Decomposition">Singular Value Decomposition</a></td><td valign="top"><a href="Stability-of-fastest-modes.html#Stability-of-fastest-modes">4.5 Stability analysis of fastest modes</a></td></tr>
<tr><td></td><td valign="top"><a href="Stability-of-fastest-modes.html#index-sltc_002eexe">‘<tt>sltc.exe</tt>’</a></td><td valign="top"><a href="Stability-of-fastest-modes.html#Stability-of-fastest-modes">4.5 Stability analysis of fastest modes</a></td></tr>
<tr><td></td><td valign="top"><a href="Stability-of-fastest-modes.html#index-sltc_002eexe-1">‘<tt>sltc.exe</tt>’</a></td><td valign="top"><a href="Stability-of-fastest-modes.html#SVD-run-and-output">4.5.3 Singular Value Decomposition run and output</a></td></tr>
<tr><td></td><td valign="top"><a href="Generalized-TLS.html#index-sltcirc_002eexe">‘<tt>sltcirc.exe</tt>’</a></td><td valign="top"><a href="Generalized-TLS.html#Generalized-TLS">4.6 Generalized linear tangent system analysis</a></td></tr>
<tr><td></td><td valign="top"><a href="Generalized-TLS.html#index-sltcirc_002eexe-1">‘<tt>sltcirc.exe</tt>’</a></td><td valign="top"><a href="Generalized-TLS.html#GTLS-run-and-output">4.6.3 Generalized tangent linear system analysis run and output</a></td></tr>
<tr><td></td><td valign="top"><a href="Stability-of-fastest-modes.html#index-smod"><code>smod</code></a></td><td valign="top"><a href="Stability-of-fastest-modes.html#SVD-with-cmz">4.5.1 Singular Value Decomposition with cmz</a></td></tr>
<tr><td></td><td valign="top"><a href="Generalized-TLS.html#index-smod-1"><code>smod</code></a></td><td valign="top"><a href="Generalized-TLS.html#GTLS-with-cmz">4.6.1 Generalized tangent linear system with cmz</a></td></tr>
<tr><td></td><td valign="top"><a href="A-model-description.html#index-starting-point">starting point</a></td><td valign="top"><a href="A-model-description.html#Starting-points">Starting points</a></td></tr>
<tr><td></td><td valign="top"><a href="Stability-of-fastest-modes.html#index-state-matrix">state matrix</a></td><td valign="top"><a href="Stability-of-fastest-modes.html#Stability-of-fastest-modes">4.5 Stability analysis of fastest modes</a></td></tr>
<tr><td></td><td valign="top"><a href="Stability-of-fastest-modes.html#index-SVD">SVD</a></td><td valign="top"><a href="Stability-of-fastest-modes.html#Stability-of-fastest-modes">4.5 Stability analysis of fastest modes</a></td></tr>
<tr><td></td><td valign="top"><a href="Stability-of-fastest-modes.html#index-SVD-output">SVD output</a></td><td valign="top"><a href="Stability-of-fastest-modes.html#SVD-run-and-output">4.5.3 Singular Value Decomposition run and output</a></td></tr>
<tr><td></td><td valign="top"><a href="Stability-of-fastest-modes.html#index-SVD-run">SVD run</a></td><td valign="top"><a href="Stability-of-fastest-modes.html#SVD-run-and-output">4.5.3 Singular Value Decomposition run and output</a></td></tr>
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<a href="#Concepts-index-1_cp_letter-C" class="summary-letter"><b>C</b></a>
<a href="#Concepts-index-1_cp_letter-D" class="summary-letter"><b>D</b></a>
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