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/*
Theseus - maximum likelihood superpositioning of macromolecular structures
Copyright (C) 2004-2014 Douglas L. Theobald
This program is free software; you can redistribute it and/or modify
it under the terms of the GNU General Public License as published by
the Free Software Foundation; either version 2 of the License, or
(at your option) any later version.
This program is distributed in the hope that it will be useful,
but WITHOUT ANY WARRANTY; without even the implied warranty of
MERCHANTABILITY or FITNESS FOR A PARTICULAR PURPOSE. See the
GNU General Public License for more details.
You should have received a copy of the GNU General Public License
along with this program; if not, write to the:
Free Software Foundation, Inc.,
59 Temple Place, Suite 330,
Boston, MA 02111-1307 USA
-/_|:|_|_\-
*/
#ifndef COVMAT_SEEN
#define COVMAT_SEEN
#include "pdbMalloc.h"
void
PrintCovMatGnuPlot(const double **mat, const int dim, char *outfile);
void
SetupCovWeighting(CdsArray *cdsA);
int
CheckZeroVariances(CdsArray *cdsA);
void
CalcBfactC(CdsArray *cdsA);
void
CalcCovariances(CdsArray *cdsA);
void
CalcCovMat(CdsArray *cdsA);
void
CalcCovMatNu(CdsArray *cdsA);
void
CalcFullCovMat(CdsArray *cdsA);
void
CovMat2CorMat(double **CovMat, const int size);
void
CorMat2CovMat(double **CovMat, const double *vars, const int size);
void
PrintCovMat(CdsArray *cdsA);
#endif
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