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/*
Theseus - maximum likelihood superpositioning of macromolecular structures
Copyright (C) 2004-2014 Douglas L. Theobald
This program is free software; you can redistribute it and/or modify
it under the terms of the GNU General Public License as published by
the Free Software Foundation; either version 2 of the License, or
(at your option) any later version.
This program is distributed in the hope that it will be useful,
but WITHOUT ANY WARRANTY; without even the implied warranty of
MERCHANTABILITY or FITNESS FOR A PARTICULAR PURPOSE. See the
GNU General Public License for more details.
You should have received a copy of the GNU General Public License
along with this program; if not, write to the:
Free Software Foundation, Inc.,
59 Temple Place, Suite 330,
Boston, MA 02111-1307 USA
-/_|:|_|_\-
*/
#ifndef MULTIPOSE2MSA_SEEN
#define MULTIPOSE2MSA_SEEN
void
Align2segID(PDBCdsArray *pdbA);
void
Align2Vars(PDBCdsArray *pdbA, CdsArray *cds);
void
Align2MSA(PDBCdsArray *pdbA, CdsArray *baseA, char *msafile_name, char *mapfile_name);
double
CalcRotationsNu(CdsArray *cdsA);
double
CalcRotationsNu2(CdsArray *cdsA);
void
pdb2fst(PDBCdsArray *pdbA);
#endif
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