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/*
Theseus - maximum likelihood superpositioning of macromolecular structures
Copyright (C) 2004-2014 Douglas L. Theobald
This program is free software; you can redistribute it and/or modify
it under the terms of the GNU General Public License as published by
the Free Software Foundation; either version 2 of the License, or
(at your option) any later version.
This program is distributed in the hope that it will be useful,
but WITHOUT ANY WARRANTY; without even the implied warranty of
MERCHANTABILITY or FITNESS FOR A PARTICULAR PURPOSE. See the
GNU General Public License for more details.
You should have received a copy of the GNU General Public License
along with this program; if not, write to the:
Free Software Foundation, Inc.,
59 Temple Place, Suite 330,
Boston, MA 02111-1307 USA
-/_|:|_|_\-
*/
#ifndef PDBMALLOC_SEEN
#define PDBMALLOC_SEEN
#include "Cds.h"
#include "PDBCds.h"
Seq2PDB
*Seq2pdbInit(void);
void
Seq2pdbAlloc(Seq2PDB *seq2pdb, const int seqnum);
void
Seq2pdbDestroy(Seq2PDB **seq2pdb);
Algorithm
*AlgorithmInit(void);
void
AlgorithmDestroy(Algorithm *algo);
Statistics
*StatsInit(void);
CdsArray
*CdsArrayInit(void);
void
CdsArrayAllocNum(CdsArray *cdsA, const int cnum);
void
CdsArrayAllocLen(CdsArray *cdsA, const int vlen);
void
CdsArrayAlloc(CdsArray *cdsA, const int cnum, const int vlen);
void
CdsArraySetup(CdsArray *cdsA);
void
DistMatsAlloc(CdsArray *cdsA);
void
DistMatsDestroy(CdsArray *cdsA);
void
CovMatsDestroy(CdsArray *cdsA);
void
PCAAlloc(CdsArray *cdsA);
void
PCADestroy(CdsArray *cdsA);
void
CdsArrayDestroy(CdsArray **cdsA_ptr);
Cds
*CdsInit(void);
void
CdsAlloc(Cds *cds, const int vlen);
void
CdsSetup(Cds *cds);
void
CdsDestroy(Cds **cds_ptr);
PDBCdsArray
*PDBCdsArrayInit(void);
void
PDBCdsArrayAllocNum(PDBCdsArray *pdbA, const int cnum);
void
PDBCdsArrayAllocLen(PDBCdsArray *pdbA, const int vlen);
void
PDBCdsArrayAlloc(PDBCdsArray *pdbA, const int cnum, const int vlen);
void
PDBCdsArrayDestroy(PDBCdsArray **pdbA_ptr);
PDBCds
*PDBCdsInit(void);
void
PDBCdsAlloc(PDBCds *pdbcds, const int vlen);
void
PDBCdsDestroy(PDBCds **cds_ptr);
#endif
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