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/*
Theseus - maximum likelihood superpositioning of macromolecular structures
Copyright (C) 2004-2015 Douglas L. Theobald
This file is part of THESEUS.
THESEUS is free software: you can redistribute it and/or modify
it under the terms of the GNU General Public License as
published by the Free Software Foundation, either version 3 of
the License, or (at your option) any later version.
THESEUS is distributed in the hope that it will be useful, but
WITHOUT ANY WARRANTY; without even the implied warranty of
MERCHANTABILITY or FITNESS FOR A PARTICULAR PURPOSE. See the
GNU General Public License for more details.
You should have received a copy of the GNU General Public
License along with THESEUS in the file 'COPYING'. If not, see
<http://www.gnu.org/licenses/>.
-/_|:|_|_\-
*/
#ifndef LELE_SEEN
#define LELE_SEEN
void
SetupLele(CdsArray *cdsA);
void
CalcLeleCovMat(CdsArray *cdsA);
double
VariancesEDMA(double *var, double **edmamat, double **distmat, const int n);
void
CalcLeleVariances(CdsArray *cdsA);
void
CdsInnerProd(Cds *cds);
void
CdsInnerProd2(Cds *cds);
void
CalcEDMADistMat(CdsArray *cdsA);
void
CalcEDMADistMatNu(CdsArray *cdsA);
void
LeleCenterMat(double **mat, const int len);
void
DoubleCenterMat(double **mat, const int len);
void
CalcMLDistMat(CdsArray *cdsA);
void
CalcMLDistMatNu(CdsArray *cdsA);
void
EmbedAveCds(CdsArray *cdsA);
#endif
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