1
2
3
4
5
6
7
8
9
10
11
12
13
14
15
16
17
18
19
20
21
22
23
24
25
26
27
28
29
30
31
32
33
34
35
36
37
38
39
40
41
42
43
44
45
46
47
48
49
50
51
52
53
54
55
56
57
58
59
60
61
62
63
64
65
66
67
68
69
70
71
72
73
74
75
76
77
78
79
80
81
82
83
84
85
86
87
88
89
90
91
92
93
94
95
96
97
98
99
100
101
102
103
104
105
106
107
108
109
110
111
112
113
114
115
116
117
118
119
120
121
122
123
124
125
126
127
128
129
130
131
132
133
134
|
# tifffile/setup.py
"""Tifffile package Setuptools script."""
import sys
import re
from setuptools import setup
buildnumber = ''
def search(pattern, code, flags=0):
# return first match for pattern in code
match = re.search(pattern, code, flags)
if match is None:
raise ValueError(f'{pattern!r} not found')
return match.groups()[0]
with open('tifffile/tifffile.py') as fh:
code = fh.read().replace('\r\n', '\n').replace('\r', '\n')
version = search(r"__version__ = '(.*?)'", code)
version += ('.' + buildnumber) if buildnumber else ''
description = search(r'"""(.*)\.(?:\r\n|\r|\n)', code)
readme = search(
r'(?:\r\n|\r|\n){2}r"""(.*)"""(?:\r\n|\r|\n){2}from __future__',
code,
re.MULTILINE | re.DOTALL,
)
readme = '\n'.join(
[description, '=' * len(description)] + readme.splitlines()[1:]
)
if 'sdist' in sys.argv:
# update README, LICENSE, and CHANGES files
with open('README.rst', 'w') as fh:
fh.write(readme)
license = search(
r'(# Copyright.*?(?:\r\n|\r|\n))(?:\r\n|\r|\n)+r""',
code,
re.MULTILINE | re.DOTALL,
)
license = license.replace('# ', '').replace('#', '')
with open('LICENSE', 'w') as fh:
fh.write('BSD 3-Clause License\n\n')
fh.write(license)
revisions = search(
r'(?:\r\n|\r|\n){2}(Revisions.*)- \.\.\.',
readme,
re.MULTILINE | re.DOTALL,
).strip()
with open('CHANGES.rst') as fh:
old = fh.read()
old = old.split(revisions.splitlines()[-1])[-1]
with open('CHANGES.rst', 'w') as fh:
fh.write(revisions.strip())
fh.write(old)
setup(
name='tifffile',
version=version,
license='BSD',
description=description,
long_description=readme,
author='Christoph Gohlke',
author_email='cgohlke@cgohlke.com',
url='https://www.cgohlke.com',
project_urls={
'Bug Tracker': 'https://github.com/cgohlke/tifffile/issues',
'Source Code': 'https://github.com/cgohlke/tifffile',
# 'Documentation': 'https://',
},
packages=['tifffile'],
python_requires='>=3.8',
install_requires=[
'numpy',
# 'imagecodecs>=2023.1.23',
],
extras_require={
'all': [
'imagecodecs>=2023.1.23',
'matplotlib',
'defusedxml',
'lxml',
'zarr',
'fsspec',
]
},
tests_require=[
'pytest',
'imagecodecs',
'czifile',
'cmapfile',
'oiffile',
'lfdfiles',
'roifile',
'lxml',
'zarr',
'dask',
'xarray',
'fsspec',
'defusedxml',
'ndtiff',
],
entry_points={
'console_scripts': [
'tifffile = tifffile:main',
],
# 'napari.plugin': ['tifffile = tifffile.napari_tifffile'],
},
platforms=['any'],
classifiers=[
'Development Status :: 4 - Beta',
'License :: OSI Approved :: BSD License',
'Intended Audience :: Science/Research',
'Intended Audience :: Developers',
'Operating System :: OS Independent',
'Programming Language :: Python :: 3 :: Only',
'Programming Language :: Python :: 3.8',
'Programming Language :: Python :: 3.9',
'Programming Language :: Python :: 3.10',
'Programming Language :: Python :: 3.11',
],
)
|
