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# tifffile/setup.py
"""Tifffile package Setuptools script."""
import re
import sys
from setuptools import setup
buildnumber = ''
def search(pattern: str, string: str, flags: int = 0) -> str:
"""Return first match of pattern in string."""
match = re.search(pattern, string, flags)
if match is None:
raise ValueError(f'{pattern!r} not found')
return match.groups()[0]
def fix_docstring_examples(docstring: str) -> str:
"""Return docstring with examples fixed for GitHub."""
start = True
indent = False
lines = ['..', ' This file is generated by setup.py', '']
for line in docstring.splitlines():
if not line.strip():
start = True
indent = False
if line.startswith('>>> '):
indent = True
if start:
lines.extend(['.. code-block:: python', ''])
start = False
lines.append((' ' if indent else '') + line)
return '\n'.join(lines)
with open('tifffile/tifffile.py', encoding='utf-8') as fh:
code = fh.read().replace('\r\n', '\n').replace('\r', '\n')
version = search(r"__version__ = '(.*?)'", code).replace('.x.x', '.dev0')
version += ('.' + buildnumber) if buildnumber else ''
description = search(r'"""(.*)\.(?:\r\n|\r|\n)', code)
readme = search(
r'(?:\r\n|\r|\n){2}r"""(.*)"""(?:\r\n|\r|\n){2}from __future__',
code,
re.MULTILINE | re.DOTALL,
)
readme = '\n'.join(
[description, '=' * len(description)] + readme.splitlines()[1:]
)
if 'sdist' in sys.argv:
# update README, LICENSE, and CHANGES files
with open('README.rst', 'w', encoding='utf-8') as fh:
fh.write(fix_docstring_examples(readme))
license = search(
r'(# Copyright.*?(?:\r\n|\r|\n))(?:\r\n|\r|\n)+r""',
code,
re.MULTILINE | re.DOTALL,
)
license = license.replace('# ', '').replace('#', '')
with open('LICENSE', 'w', encoding='utf-8') as fh:
fh.write('BSD 3-Clause License\n\n')
fh.write(license)
revisions = search(
r'(?:\r\n|\r|\n){2}(Revisions.*)- …',
readme,
re.MULTILINE | re.DOTALL,
).strip()
with open('CHANGES.rst', encoding='utf-8') as fh:
old = fh.read()
old = old.split(revisions.splitlines()[-1])[-1]
with open('CHANGES.rst', 'w', encoding='utf-8') as fh:
fh.write(revisions.strip())
fh.write(old)
setup(
name='tifffile',
version=version,
license='BSD-3-Clause',
description=description,
long_description=readme,
long_description_content_type='text/x-rst',
author='Christoph Gohlke',
author_email='cgohlke@cgohlke.com',
url='https://www.cgohlke.com',
project_urls={
'Bug Tracker': 'https://github.com/cgohlke/tifffile/issues',
'Source Code': 'https://github.com/cgohlke/tifffile',
# 'Documentation': 'https://',
},
packages=['tifffile'],
package_data={'tifffile': ['py.typed']},
python_requires='>=3.10',
install_requires=[
'numpy',
# 'imagecodecs>=2023.8.12',
],
extras_require={
'codecs': ['imagecodecs>=2024.12.30'],
'xml': ['defusedxml', 'lxml'],
'zarr': ['zarr<3', 'fsspec'],
'plot': ['matplotlib'],
'all': [
'imagecodecs>=2024.12.30',
'matplotlib',
'defusedxml',
'lxml',
'zarr<3',
'fsspec',
],
'test': [
'pytest',
'imagecodecs',
'czifile',
'cmapfile',
'oiffile',
'lfdfiles',
'psdtags',
'roifile',
'lxml',
'zarr<3',
'dask',
'xarray',
'fsspec',
'defusedxml',
'ndtiff',
],
},
entry_points={
'console_scripts': [
'tifffile = tifffile:main',
],
# 'napari.plugin': ['tifffile = tifffile.napari_tifffile'],
},
platforms=['any'],
classifiers=[
'Development Status :: 4 - Beta',
'Intended Audience :: Science/Research',
'Intended Audience :: Developers',
'Operating System :: OS Independent',
'Programming Language :: Python :: 3 :: Only',
'Programming Language :: Python :: 3.10',
'Programming Language :: Python :: 3.11',
'Programming Language :: Python :: 3.12',
'Programming Language :: Python :: 3.13',
],
)
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