1
2
3
4
5
6
7
8
9
10
11
12
13
14
15
16
17
18
19
20
21
22
23
24
25
26
27
28
29
30
31
32
33
34
35
36
37
38
39
40
41
42
43
44
45
46
|
// A. L. Delcher
//
// File: multi-extract.hh
//
// Last Modified: Tue Aug 9 09:30:18 EDT 2005
//
// Declarations for multi-extract.cc
#ifndef __MULTI_EXTRACT_HH_INCLUDED
#define __MULTI_EXTRACT_HH_INCLUDED
#include "delcher.hh"
#include "fasta.hh"
#include "gene.hh"
struct Coord_Info_t
{
char * id, * tag;
long int start, end;
int dir;
};
static bool By_Tag
(Coord_Info_t const & a, Coord_Info_t const & b)
{
return (strcmp (a . tag, b . tag) < 0);
}
static void Find_Matches
(char * p, const vector <Coord_Info_t> & list, int & sub, int & num);
static void Output_Subsequence
(const string & seq, long int i, long int len, int incr,
const char * id, const char * tag, long int start, long int end);
static void Parse_Command_Line
(int argc, char * argv []);
static void Usage
(void);
#endif
|
