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.\" DO NOT MODIFY THIS FILE! It was generated by help2man 1.47.12.
.TH TRANSIT "1" "August 2020" "transit 3.1.0" "User Commands"
.SH NAME
transit \- statistical calculations of essentiality of genes or genomic regions
.SH SYNOPSIS
.B python
\fI\,/usr/bin/transit <method>\/\fR
.SH DESCRIPTION
For commandline mode, please use one of the known methods (or see documentation to add a new one):
Analysis methods:
.IP
\- example
\- gumbel
\- binomial
\- griffin
\- hmm
\- resampling
\- tn5gaps
\- rankproduct
\- utest
\- GI
\- anova
\- zinb
\- pathway_enrichment
\- tnseq_stats
\- corrplot
\- heatmap
.SS "Other functions:"
.IP
\- normalize
\- convert
\- export
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