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Source: tophat
Maintainer: Debian Med Packaging Team <debian-med-packaging@lists.alioth.debian.org>
Uploaders: Carlos Borroto <carlos.borroto@gmail.com>,
Alexandre Mestiashvili <alex@biotec.tu-dresden.de>,
Andreas Tille <tille@debian.org>
Section: science
Priority: optional
Build-Depends: debhelper (>= 9),
autotools-dev,
libbam-dev (>= 0.1.16),
zlib1g-dev,
dh-autoreconf,
python,
seqan-dev (>= 1.4),
libboost-system-dev,
libboost-thread-dev,
help2man
Standards-Version: 3.9.6
Vcs-Browser: https://anonscm.debian.org/cgit/debian-med/tophat.git
Vcs-Git: git://anonscm.debian.org/debian-med/tophat.git
Homepage: http://ccb.jhu.edu/software/tophat
Package: tophat
Architecture: amd64 kfreebsd-amd64
Depends: ${shlibs:Depends},
${misc:Depends},
python,
bowtie2 | bowtie
Suggests: cufflinks
Description: fast splice junction mapper for RNA-Seq reads
TopHat aligns RNA-Seq reads to mammalian-sized genomes using the ultra
high-throughput short read aligner Bowtie, and then analyzes the
mapping results to identify splice junctions between exons.
TopHat is a collaborative effort between the University of Maryland
Center for Bioinformatics and Computational Biology and the
University of California, Berkeley Departments of Mathematics and
Molecular and Cell Biology.
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