1
2
3
4
5
6
7
8
9
10
11
12
13
14
15
16
17
18
19
20
21
22
23
24
25
26
27
28
29
30
31
32
33
34
35
36
37
|
Source: tophat
Maintainer: Debian Med Packaging Team <debian-med-packaging@lists.alioth.debian.org>
Uploaders: Carlos Borroto <carlos.borroto@gmail.com>,
Alexandre Mestiashvili <alex@biotec.tu-dresden.de>,
Andreas Tille <tille@debian.org>
Section: science
Priority: optional
Build-Depends: debhelper (>= 11~),
libbam-dev,
zlib1g-dev,
python,
seqan-dev (>= 1.4),
libboost-system-dev,
libboost-thread-dev,
help2man,
bowtie
Standards-Version: 4.2.0
Vcs-Browser: https://salsa.debian.org/med-team/tophat
Vcs-Git: https://salsa.debian.org/med-team/tophat.git
Homepage: http://ccb.jhu.edu/software/tophat
Package: tophat
Architecture: any
Depends: ${shlibs:Depends},
${misc:Depends},
python,
bowtie2 | bowtie,
samtools (>= 1.5)
Suggests: cufflinks
Description: fast splice junction mapper for RNA-Seq reads
TopHat aligns RNA-Seq reads to mammalian-sized genomes using the ultra
high-throughput short read aligner Bowtie, and then analyzes the
mapping results to identify splice junctions between exons.
TopHat is a collaborative effort between the University of Maryland
Center for Bioinformatics and Computational Biology and the
University of California, Berkeley Departments of Mathematics and
Molecular and Cell Biology.
|
