1
2
3
4
5
6
7
8
9
10
11
12
13
14
15
16
17
18
19
20
21
22
23
24
25
26
27
28
29
30
31
32
33
34
35
36
37
38
39
40
41
42
43
44
45
46
47
48
49
50
51
52
53
54
55
56
57
58
59
60
61
62
63
64
65
66
67
68
69
70
71
72
73
74
75
76
77
78
79
80
81
82
83
84
85
86
87
88
89
90
91
92
93
94
95
96
97
98
99
100
101
102
103
104
105
106
107
108
109
110
111
112
113
114
115
116
117
118
119
120
121
122
123
124
125
126
127
128
129
130
131
132
133
134
135
136
137
138
139
140
141
142
143
144
145
146
147
148
149
150
151
152
153
154
155
156
157
158
159
160
161
162
163
164
165
166
167
168
169
170
171
172
173
174
175
176
177
178
179
180
181
182
183
184
185
186
187
188
189
190
191
192
193
194
195
196
197
198
199
200
201
202
203
204
205
206
207
208
209
210
211
212
213
214
215
216
217
218
219
220
221
222
223
224
225
226
227
228
229
230
231
232
233
234
235
236
237
238
239
240
241
242
243
244
245
246
247
248
249
250
251
252
253
254
255
256
257
258
259
260
261
262
263
264
265
266
267
268
269
270
271
272
273
274
275
276
277
278
279
280
281
282
283
284
285
286
287
288
289
290
291
292
293
294
295
296
297
298
299
300
301
302
303
304
305
306
307
308
309
310
311
312
313
314
315
316
317
318
319
320
321
322
323
324
325
326
327
328
329
330
331
332
333
334
335
336
337
338
339
340
341
342
343
344
345
346
347
348
349
350
351
352
353
354
355
356
357
358
359
360
361
362
363
364
365
366
367
368
369
370
371
372
373
374
375
376
377
378
379
380
381
382
383
384
385
386
387
388
389
390
391
392
393
394
395
396
397
398
399
400
401
402
403
404
405
406
407
408
409
410
411
412
413
414
415
416
417
418
419
420
421
422
423
424
425
426
427
428
429
430
431
432
433
434
435
436
437
438
439
440
441
442
443
444
445
446
447
448
449
450
451
452
453
454
455
456
457
458
459
460
461
462
463
464
465
466
467
468
469
470
471
472
473
474
475
476
477
478
479
480
481
482
483
484
485
486
487
488
489
490
491
492
493
494
495
496
497
498
499
500
501
502
503
504
505
506
507
508
509
510
511
512
513
514
515
516
517
518
519
520
521
522
523
524
525
526
527
528
529
530
531
532
533
534
535
536
537
538
539
540
541
542
543
544
545
546
547
548
549
550
551
552
553
554
555
556
557
558
559
560
561
562
563
564
565
566
567
568
569
570
571
572
573
574
575
576
577
578
579
580
581
582
583
584
585
586
587
588
589
590
591
592
593
594
595
596
597
598
599
600
601
602
603
604
605
606
607
608
609
610
611
612
613
614
615
616
617
618
619
620
621
622
623
624
625
626
627
628
629
630
631
632
633
634
635
636
637
638
639
640
641
642
643
644
645
646
647
648
649
650
651
652
653
654
655
656
657
658
659
660
661
662
663
664
665
666
667
668
669
670
671
672
673
674
675
676
677
678
679
680
681
682
683
684
685
686
687
688
689
690
691
692
693
694
695
696
697
698
699
700
701
702
703
704
705
706
707
708
709
710
711
712
713
714
715
716
717
718
719
720
721
722
723
724
725
726
727
728
729
730
731
732
733
734
735
736
737
738
739
740
741
742
743
744
745
746
747
748
749
750
751
752
753
754
755
756
757
758
759
760
761
762
763
764
765
766
767
768
769
770
771
772
773
774
775
776
777
778
779
780
781
782
783
784
785
786
787
788
789
790
791
792
793
794
795
796
797
798
799
800
801
802
803
804
805
806
807
808
809
810
811
812
813
814
815
816
817
818
819
820
821
822
823
824
825
826
827
828
829
830
831
832
833
834
835
836
837
838
839
840
841
842
843
844
845
846
847
848
849
850
851
852
853
854
855
856
857
858
859
860
861
862
863
864
865
866
867
868
869
870
871
872
873
874
875
876
877
878
879
880
881
882
883
884
885
886
887
888
889
890
891
892
893
894
895
896
897
898
899
900
901
902
903
904
905
906
907
908
909
910
911
912
913
914
915
916
917
918
919
920
921
922
923
924
925
926
927
928
929
930
931
932
933
934
935
936
937
938
939
940
941
942
943
944
945
946
947
948
949
950
951
952
953
954
955
956
957
958
959
960
961
962
963
964
965
966
967
968
969
970
971
972
973
974
975
976
977
978
979
980
981
982
983
984
985
986
987
988
989
990
991
992
993
994
995
996
997
998
999
1000
1001
1002
1003
1004
1005
1006
1007
1008
1009
1010
1011
1012
1013
1014
1015
1016
1017
1018
1019
1020
1021
1022
1023
1024
1025
1026
1027
1028
1029
1030
1031
1032
1033
1034
1035
1036
1037
1038
1039
1040
1041
1042
1043
1044
1045
1046
1047
1048
1049
1050
1051
1052
1053
1054
1055
1056
1057
1058
1059
1060
1061
1062
1063
1064
1065
1066
1067
1068
1069
1070
1071
1072
1073
1074
1075
1076
1077
1078
1079
1080
1081
1082
1083
1084
1085
1086
1087
1088
1089
1090
1091
1092
1093
1094
1095
1096
1097
1098
1099
1100
1101
1102
1103
1104
1105
1106
1107
1108
1109
1110
1111
1112
1113
1114
1115
1116
1117
1118
1119
1120
1121
1122
1123
1124
1125
1126
1127
1128
1129
1130
1131
1132
1133
1134
1135
1136
1137
1138
1139
1140
1141
1142
1143
1144
1145
1146
1147
1148
1149
1150
1151
1152
1153
1154
1155
1156
1157
1158
1159
1160
1161
1162
1163
1164
1165
1166
1167
1168
1169
1170
1171
1172
1173
1174
1175
1176
1177
1178
1179
1180
1181
1182
1183
1184
1185
1186
1187
1188
1189
1190
1191
1192
1193
1194
1195
1196
1197
1198
1199
1200
1201
1202
1203
1204
1205
1206
1207
1208
1209
1210
1211
1212
1213
1214
1215
1216
1217
1218
1219
1220
1221
1222
1223
1224
1225
1226
1227
1228
1229
1230
1231
1232
1233
1234
1235
1236
1237
1238
1239
1240
1241
1242
1243
1244
1245
1246
1247
1248
1249
1250
1251
1252
1253
1254
1255
1256
1257
1258
1259
1260
1261
1262
1263
1264
1265
1266
1267
1268
1269
1270
1271
1272
1273
1274
1275
1276
1277
1278
1279
1280
1281
1282
1283
1284
1285
1286
1287
1288
1289
1290
1291
1292
1293
1294
1295
1296
1297
1298
1299
1300
1301
1302
1303
1304
1305
1306
1307
1308
1309
1310
1311
1312
1313
1314
1315
1316
1317
1318
1319
1320
1321
1322
1323
1324
1325
1326
1327
1328
1329
1330
1331
1332
1333
1334
1335
1336
1337
1338
1339
1340
1341
1342
1343
1344
1345
1346
1347
1348
1349
1350
1351
1352
1353
1354
1355
1356
1357
1358
1359
1360
1361
1362
1363
1364
1365
1366
1367
1368
1369
1370
1371
1372
1373
1374
1375
1376
1377
1378
1379
1380
1381
1382
1383
1384
1385
1386
1387
1388
1389
1390
1391
1392
1393
1394
1395
1396
1397
1398
1399
1400
1401
1402
1403
1404
1405
1406
1407
1408
1409
1410
1411
1412
1413
1414
1415
1416
1417
1418
1419
1420
1421
1422
1423
1424
1425
1426
1427
1428
1429
1430
1431
1432
1433
1434
1435
1436
1437
1438
1439
1440
1441
1442
1443
1444
1445
1446
1447
1448
1449
1450
1451
1452
1453
1454
1455
1456
1457
1458
1459
1460
1461
1462
1463
1464
1465
1466
1467
1468
1469
1470
1471
1472
1473
1474
1475
1476
1477
1478
1479
1480
1481
1482
1483
1484
1485
1486
1487
1488
1489
1490
1491
1492
1493
1494
1495
1496
1497
1498
1499
1500
1501
1502
1503
1504
1505
1506
1507
1508
1509
1510
1511
1512
1513
1514
1515
1516
1517
1518
1519
1520
1521
1522
1523
1524
1525
1526
1527
1528
1529
1530
1531
1532
1533
1534
1535
1536
1537
1538
1539
1540
1541
1542
1543
1544
1545
1546
1547
1548
1549
1550
1551
1552
1553
1554
1555
1556
1557
1558
1559
1560
1561
1562
1563
1564
1565
1566
1567
1568
1569
1570
1571
1572
1573
1574
1575
1576
1577
1578
1579
1580
1581
1582
1583
1584
1585
1586
1587
1588
1589
1590
1591
1592
1593
1594
1595
1596
1597
1598
1599
1600
1601
1602
1603
1604
1605
1606
1607
1608
1609
1610
1611
1612
1613
1614
1615
1616
1617
1618
1619
1620
1621
1622
1623
1624
1625
1626
1627
1628
1629
1630
1631
1632
1633
1634
1635
1636
1637
1638
1639
1640
1641
1642
1643
1644
1645
1646
1647
1648
1649
1650
1651
1652
1653
1654
1655
1656
1657
1658
1659
1660
1661
1662
1663
1664
1665
1666
1667
1668
1669
1670
1671
1672
1673
1674
1675
1676
1677
1678
1679
1680
1681
1682
1683
1684
1685
1686
1687
1688
1689
1690
1691
1692
1693
|
Data_file_name Prsm_ID Spectrum_ID Scan(s) #peaks Charge Precursor_mass Adjusted_precursor_mass Protein_ID Protein_name Protein_mass First_residue Last_residue Peptide #unexpected_modifications #matched_peaks #matched_fragment_ions P-value E-value FDR
/home/xiaowen/c_project/proteomics_cpp/testcases/data/st_no_digestion.msalign 1851 2638 3523 202 9 12160.52537071875 12160.430410581053 7986 gi|16767406|ref|NP_463021.1| 50S ribosomal subunit protein L7/L12 [Salmonella typhimurium LT2] 12291.470907407227 2 121 M.SITKDQIIEAVSAMSVMDVVELISAMEEKFGVSAAAAVAVAAGPAEAAEEKTEFDVILKAAGANKVAVIKAVRGATGLGLKEAKDLVESAPAALKEGVSKDDAEALKKSLEEAGAEVEVK. 0 81.0 68.0 2.8572300509916986E-48 2.8572300509916986E-48 0.0
/home/xiaowen/c_project/proteomics_cpp/testcases/data/st_no_digestion.msalign 1814 2586 3454 135 7 8103.07269846875 8102.998132901612 3764 gi|16765287|ref|NP_460902.1| putative cytoplasmic protein [Salmonella typhimurium LT2] 8234.038629727784 2 74 M.STPDFSTAENNQELATEVNCLKAMLTLMLQAMGQADAGRVILKMEKQIAQMDDEAQAAVFSSTVKQIKQAYRQ. 0 67.0 52.0 9.463848287432783E-46 9.463848287432783E-46 0.0
/home/xiaowen/c_project/proteomics_cpp/testcases/data/st_no_digestion.msalign 1823 2595 3466 135 8 8103.0571216875 8102.998132901612 3764 gi|16765287|ref|NP_460902.1| putative cytoplasmic protein [Salmonella typhimurium LT2] 8234.038629727784 2 74 M.STPDFSTAENNQELATEVNCLKAMLTLMLQAMGQADAGRVILKMEKQIAQMDDEAQAAVFSSTVKQIKQAYRQ. 0 75.0 54.0 1.5375882612221888E-45 1.5375882612221888E-45 0.0
/home/xiaowen/c_project/proteomics_cpp/testcases/data/st_no_digestion.msalign 1816 2588 3456 135 8 8103.0805591875 8102.998132901612 3764 gi|16765287|ref|NP_460902.1| putative cytoplasmic protein [Salmonella typhimurium LT2] 8234.038629727784 2 74 M.STPDFSTAENNQELATEVNCLKAMLTLMLQAMGQADAGRVILKMEKQIAQMDDEAQAAVFSSTVKQIKQAYRQ. 0 71.0 53.0 7.786550093946625E-45 7.786550093946625E-45 0.0
/home/xiaowen/c_project/proteomics_cpp/testcases/data/st_no_digestion.msalign 1815 2587 3455 135 8 8103.0805591875 8102.998132901612 3764 gi|16765287|ref|NP_460902.1| putative cytoplasmic protein [Salmonella typhimurium LT2] 8234.038629727784 2 74 M.STPDFSTAENNQELATEVNCLKAMLTLMLQAMGQADAGRVILKMEKQIAQMDDEAQAAVFSSTVKQIKQAYRQ. 0 68.0 54.0 8.0243301757748E-45 8.0243301757748E-45 0.0
/home/xiaowen/c_project/proteomics_cpp/testcases/data/st_no_digestion.msalign 1856 2651 3540 201 9 12160.497904898437 12160.430410581053 7986 gi|16767406|ref|NP_463021.1| 50S ribosomal subunit protein L7/L12 [Salmonella typhimurium LT2] 12291.470907407227 2 121 M.SITKDQIIEAVSAMSVMDVVELISAMEEKFGVSAAAAVAVAAGPAEAAEEKTEFDVILKAAGANKVAVIKAVRGATGLGLKEAKDLVESAPAALKEGVSKDDAEALKKSLEEAGAEVEVK. 0 80.0 67.0 9.037842296440995E-44 9.037842296440995E-44 0.0
/home/xiaowen/c_project/proteomics_cpp/testcases/data/st_no_digestion.msalign 1829 2604 3478 135 7 8103.027410382812 8102.998132901612 3764 gi|16765287|ref|NP_460902.1| putative cytoplasmic protein [Salmonella typhimurium LT2] 8234.038629727784 2 74 M.STPDFSTAENNQELATEVNCLKAMLTLMLQAMGQADAGRVILKMEKQIAQMDDEAQAAVFSSTVKQIKQAYRQ. 0 66.0 50.0 1.6352532392759772E-43 1.6352532392759772E-43 0.0
/home/xiaowen/c_project/proteomics_cpp/testcases/data/st_no_digestion.msalign 1933 2863 3823 166 10 9972.992594546879 9972.923879819336 4604 gi|16765707|ref|NP_461322.1| putative cytoplasmic protein [Salmonella typhimurium LT2] 9972.923879819336 1 91 .MIAEFESRILALIDDMVEHASDDELFASGYLRGHLTLAIAELESGDDHSVEAVYANVSQSLEKAIGAGELSPRDQALVKAMWDNLFDKAKQ. 0 80.0 65.0 1.8961942259862832E-43 3.7923884519725665E-43 0.0
/home/xiaowen/c_project/proteomics_cpp/testcases/data/st_no_digestion.msalign 1818 2590 3459 135 8 8103.04393809375 8102.998132901612 3764 gi|16765287|ref|NP_460902.1| putative cytoplasmic protein [Salmonella typhimurium LT2] 8234.038629727784 2 74 M.STPDFSTAENNQELATEVNCLKAMLTLMLQAMGQADAGRVILKMEKQIAQMDDEAQAAVFSSTVKQIKQAYRQ. 0 74.0 53.0 4.524720417259618E-43 4.524720417259618E-43 0.0
/home/xiaowen/c_project/proteomics_cpp/testcases/data/st_no_digestion.msalign 1546 2138 2856 165 9 12939.57844478125 12939.526521878664 2772 gi|16764781|ref|NP_460396.1| putative glutaredoxin protein [Salmonella typhimurium LT2] 13070.567018704834 2 115 M.STTIEKIQRQIAENPILLYMKGSPKLPSCGFSAQAVQALSACGERFAYVDILQNPDIRAELPKYANWPTFPQLWVDGELVGGCDIVIEMYQRGELQQLIKETAAKYKTQEPDAE. 0 79.0 64.0 5.4530296114460535E-43 5.4530296114460535E-43 0.0
/home/xiaowen/c_project/proteomics_cpp/testcases/data/st_no_digestion.msalign 1932 2862 3822 166 10 9972.992594546879 9972.923879819336 4604 gi|16765707|ref|NP_461322.1| putative cytoplasmic protein [Salmonella typhimurium LT2] 9972.923879819336 1 91 .MIAEFESRILALIDDMVEHASDDELFASGYLRGHLTLAIAELESGDDHSVEAVYANVSQSLEKAIGAGELSPRDQALVKAMWDNLFDKAKQ. 0 82.0 68.0 3.112394188056836E-43 6.224788376113672E-43 0.0
/home/xiaowen/c_project/proteomics_cpp/testcases/data/st_no_digestion.msalign 1545 2137 2855 151 8 12938.5803496875 12938.5803496875 2772 gi|16764781|ref|NP_460396.1| putative glutaredoxin protein [Salmonella typhimurium LT2] 13070.567018704834 2 115 M.STTIEKIQRQIAENPILLYMKGSPKLPSCGFSAQAVQALSAC(GERFA)[-.95]YVDILQNPDIRAELPKYANWPTFPQLWVDGELVGGCDIVIEMYQRGELQQLIKETAAKYKTQEPDAE. 1 72.0 64.0 8.227176309143343E-42 1.5375534267424206E-42 0.0
/home/xiaowen/c_project/proteomics_cpp/testcases/data/st_no_digestion.msalign 1817 2589 3458 135 7 8103.033391828125 8102.998132901612 3764 gi|16765287|ref|NP_460902.1| putative cytoplasmic protein [Salmonella typhimurium LT2] 8234.038629727784 2 74 M.STPDFSTAENNQELATEVNCLKAMLTLMLQAMGQADAGRVILKMEKQIAQMDDEAQAAVFSSTVKQIKQAYRQ. 0 60.0 48.0 8.532441154941116E-42 8.532441154941116E-42 0.0
/home/xiaowen/c_project/proteomics_cpp/testcases/data/st_no_digestion.msalign 1824 2596 3467 135 7 8103.047918195312 8102.998132901612 3764 gi|16765287|ref|NP_460902.1| putative cytoplasmic protein [Salmonella typhimurium LT2] 8234.038629727784 2 74 M.STPDFSTAENNQELATEVNCLKAMLTLMLQAMGQADAGRVILKMEKQIAQMDDEAQAAVFSSTVKQIKQAYRQ. 0 62.0 49.0 1.5112136416453784E-41 1.5112136416453784E-41 0.0
/home/xiaowen/c_project/proteomics_cpp/testcases/data/st_no_digestion.msalign 1548 2140 2859 156 11 12939.60295528125 12939.526521878663 2772 gi|16764781|ref|NP_460396.1| putative glutaredoxin protein [Salmonella typhimurium LT2] 13070.567018704834 2 115 M.STTIEKIQRQIAENPILLYMKGSPKLPSCGFSAQAVQALSACGERFAYVDILQNPDIRAELPKYANWPTFPQLWVDGELVGGCDIVIEMYQRGELQQLIKETAAKYKTQEPDAE. 0 69.0 52.0 3.8711817595940443E-41 3.8711817595940443E-41 0.0
/home/xiaowen/c_project/proteomics_cpp/testcases/data/st_no_digestion.msalign 1819 2591 3460 135 8 8103.04393809375 8102.998132901612 3764 gi|16765287|ref|NP_460902.1| putative cytoplasmic protein [Salmonella typhimurium LT2] 8234.038629727784 2 74 M.STPDFSTAENNQELATEVNCLKAMLTLMLQAMGQADAGRVILKMEKQIAQMDDEAQAAVFSSTVKQIKQAYRQ. 0 66.0 50.0 5.019806345625841E-41 5.019806345625841E-41 0.0
/home/xiaowen/c_project/proteomics_cpp/testcases/data/st_no_digestion.msalign 1556 2148 2870 139 8 12939.5354278125 12939.526521878663 2772 gi|16764781|ref|NP_460396.1| putative glutaredoxin protein [Salmonella typhimurium LT2] 13070.567018704834 2 115 M.STTIEKIQRQIAENPILLYMKGSPKLPSCGFSAQAVQALSACGERFAYVDILQNPDIRAELPKYANWPTFPQLWVDGELVGGCDIVIEMYQRGELQQLIKETAAKYKTQEPDAE. 0 64.0 56.0 1.4067746943041754E-40 1.4067746943041754E-40 0.0
/home/xiaowen/c_project/proteomics_cpp/testcases/data/st_no_digestion.msalign 1826 2598 3470 135 8 8103.06737559375 8102.998132901612 3764 gi|16765287|ref|NP_460902.1| putative cytoplasmic protein [Salmonella typhimurium LT2] 8234.038629727784 2 74 M.STPDFSTAENNQELATEVNCLKAMLTLMLQAMGQADAGRVILKMEKQIAQMDDEAQAAVFSSTVKQIKQAYRQ. 0 65.0 48.0 3.4288123037251186E-40 3.4288123037251186E-40 0.0
/home/xiaowen/c_project/proteomics_cpp/testcases/data/st_no_digestion.msalign 1047 1482 1982 121 6 7267.620121265625 7267.58753033203 7050 gi|16766935|ref|NP_462550.1| major cold shock protein [Salmonella typhimurium LT2] 7398.628027158203 2 70 M.SGKMTGIVKWFNADKGFGFITPDDGSKDVFVHFSAIQNDGYKSLDEGQKVSFTIESGAKGPAAGNVTSL. 0 72.0 52.0 1.7697656361637403E-39 1.7697656361637403E-39 0.0
/home/xiaowen/c_project/proteomics_cpp/testcases/data/st_no_digestion.msalign 1827 2599 3471 135 7 8103.055608625 8102.998132901612 3764 gi|16765287|ref|NP_460902.1| putative cytoplasmic protein [Salmonella typhimurium LT2] 8234.038629727784 2 74 M.STPDFSTAENNQELATEVNCLKAMLTLMLQAMGQADAGRVILKMEKQIAQMDDEAQAAVFSSTVKQIKQAYRQ. 0 59.0 49.0 2.8169994102815696E-39 2.8169994102815696E-39 0.0
/home/xiaowen/c_project/proteomics_cpp/testcases/data/st_no_digestion.msalign 1904 2760 3686 203 12 12202.580438015626 12202.440977292481 7986 gi|16767406|ref|NP_463021.1| 50S ribosomal subunit protein L7/L12 [Salmonella typhimurium LT2] 12291.470907407227 2 121 M.(S)[42.01]ITKDQIIEAVSAMSVMDVVELISAMEEKFGVSAAAAVAVAAGPAEAAEEKTEFDVILKAAGANKVAVIKAVRGATGLGLKEAKDLVESAPAALKEGVSKDDAEALKKSLEEAGAEVEVK. 0 82.0 66.0 1.061273601250708E-38 1.061273601250708E-38 0.0
/home/xiaowen/c_project/proteomics_cpp/testcases/data/st_no_digestion.msalign 1820 2592 3462 135 6 8103.055316265626 8102.998132901612 3764 gi|16765287|ref|NP_460902.1| putative cytoplasmic protein [Salmonella typhimurium LT2] 8234.038629727784 2 74 M.STPDFSTAENNQELATEVNCLKAMLTLMLQAMGQADAGRVILKMEKQIAQMDDEAQAAVFSSTVKQIKQAYRQ. 0 61.0 49.0 1.156488484691046E-38 1.156488484691046E-38 0.0
/home/xiaowen/c_project/proteomics_cpp/testcases/data/st_no_digestion.msalign 1084 1536 2054 114 6 7315.7871144531255 7315.736898618163 1216 gi|16764006|ref|NP_459621.1| negative regulator [Salmonella typhimurium LT2] 7446.7773954443355 2 69 M.SKIKGNVKWFNESKGFGFITPEDGSKDVFVHFSAIQTNGFKTLAEGQRVEFEITNGAKGPSAANVTAL. 0 60.0 47.0 6.044206503744258E-39 1.2088413007488516E-38 0.0
/home/xiaowen/c_project/proteomics_cpp/testcases/data/st_no_digestion.msalign 1888 2732 3648 200 9 12201.528535546875 12201.563535546875 7986 gi|16767406|ref|NP_463021.1| 50S ribosomal subunit protein L7/L12 [Salmonella typhimurium LT2] 12291.470907407227 2 121 M.(SITKDQ)[42.01]IIEAVSAMSVMDVVELISAMEEKFGVSAAAAVAVAA(G)[-.88]PAEAAEEKTEFDVILKAAGANKVAVIKAVRGATGLGLKEAKDLVESAPAALKEGVSKDDAEALKKSLEEAGAEVEVK. 1 78.0 65.0 1.5854707782896518E-37 4.3829481098597727E-38 0.0
/home/xiaowen/c_project/proteomics_cpp/testcases/data/st_no_digestion.msalign 1855 2650 3539 176 9 12160.497904898437 12160.430410581053 7986 gi|16767406|ref|NP_463021.1| 50S ribosomal subunit protein L7/L12 [Salmonella typhimurium LT2] 12291.470907407227 2 121 M.SITKDQIIEAVSAMSVMDVVELISAMEEKFGVSAAAAVAVAAGPAEAAEEKTEFDVILKAAGANKVAVIKAVRGATGLGLKEAKDLVESAPAALKEGVSKDDAEALKKSLEEAGAEVEVK. 0 59.0 54.0 7.180549248033501E-38 7.180549248033501E-38 0.0
/home/xiaowen/c_project/proteomics_cpp/testcases/data/st_no_digestion.msalign 694 1109 1484 127 8 7655.994196 7655.959249692383 702 gi|16763746|ref|NP_459361.1| putative periplasmic protein [Salmonella typhimurium LT2] 9913.159528928223 22 91 A.AEIMKKTDFDKVASEYTKIGTISTTGEMSPLDAREDLIKKADEKGADVVVLTSGQTENKIHGTADIYKKK. 0 68.0 56.0 4.2976271952380706E-39 1.2033356146666598E-37 0.0
/home/xiaowen/c_project/proteomics_cpp/testcases/data/st_no_digestion.msalign 1894 2740 3659 203 9 12201.506562890625 12201.521562890624 7986 gi|16767406|ref|NP_463021.1| 50S ribosomal subunit protein L7/L12 [Salmonella typhimurium LT2] 12291.470907407227 2 121 M.(SITKDQ)[42.01]IIEAVSAMSVMDVVELISAMEEKFGVSAAA(A)[-.92]VAVAAGPAEAAEEKTEFDVILKAAGANKVAVIKAVRGATGLGLKEAKDLVESAPAALKEGVSKDDAEALKKSLEEAGAEVEVK. 1 77.0 62.0 8.700438513861973E-37 2.407469633023438E-37 0.0
/home/xiaowen/c_project/proteomics_cpp/testcases/data/st_no_digestion.msalign 1555 2147 2868 154 10 12939.630006671876 12939.526521878664 2772 gi|16764781|ref|NP_460396.1| putative glutaredoxin protein [Salmonella typhimurium LT2] 13070.567018704834 2 115 M.STTIEKIQRQIAENPILLYMKGSPKLPSCGFSAQAVQALSACGERFAYVDILQNPDIRAELPKYANWPTFPQLWVDGELVGGCDIVIEMYQRGELQQLIKETAAKYKTQEPDAE. 0 65.0 55.0 2.875800590236581E-37 2.875800590236581E-37 0.0
/home/xiaowen/c_project/proteomics_cpp/testcases/data/st_no_digestion.msalign 1319 1820 2432 158 10 9515.218918429691 9515.17277355713 8022 gi|16767424|ref|NP_463039.1| DNA-binding protein HU-alpha [Salmonella typhimurium LT2] 9515.17277355713 1 90 .MNKTQLIDVIADKAELSKTQAKAALESTLAAITESLKEGDAVQLVGFGTFKVNHRAERTGRNPQTGKEIKIAAANVPAFVSGKALKDAVK. 0 62.0 61.0 1.5211551156219446E-37 3.0423102312438893E-37 0.0
/home/xiaowen/c_project/proteomics_cpp/testcases/data/st_no_digestion.msalign 1821 2593 3463 134 6 8103.055316265626 8102.998132901612 3764 gi|16765287|ref|NP_460902.1| putative cytoplasmic protein [Salmonella typhimurium LT2] 8234.038629727784 2 74 M.STPDFSTAENNQELATEVNCLKAMLTLMLQAMGQADAGRVILKMEKQIAQMDDEAQAAVFSSTVKQIKQAYRQ. 0 59.0 47.0 3.241848386896936E-37 3.241848386896936E-37 0.0
/home/xiaowen/c_project/proteomics_cpp/testcases/data/st_no_digestion.msalign 1853 2641 3527 125 8 12160.511650625 12160.430410581055 7986 gi|16767406|ref|NP_463021.1| 50S ribosomal subunit protein L7/L12 [Salmonella typhimurium LT2] 12291.470907407227 2 121 M.SITKDQIIEAVSAMSVMDVVELISAMEEKFGVSAAAAVAVAAGPAEAAEEKTEFDVILKAAGANKVAVIKAVRGATGLGLKEAKDLVESAPAALKEGVSKDDAEALKKSLEEAGAEVEVK. 0 55.0 50.0 4.197148927594522E-37 4.197148927594522E-37 0.0
/home/xiaowen/c_project/proteomics_cpp/testcases/data/st_no_digestion.msalign 1081 1533 2050 118 6 7315.7812550781255 7315.736898618163 1216 gi|16764006|ref|NP_459621.1| negative regulator [Salmonella typhimurium LT2] 7446.7773954443355 2 69 M.SKIKGNVKWFNESKGFGFITPEDGSKDVFVHFSAIQTNGFKTLAEGQRVEFEITNGAKGPSAANVTAL. 0 62.0 48.0 4.21736555606245E-37 8.4347311121249E-37 0.0
/home/xiaowen/c_project/proteomics_cpp/testcases/data/st_no_digestion.msalign 1550 2142 2862 139 11 12939.600269734376 12939.526521878663 2772 gi|16764781|ref|NP_460396.1| putative glutaredoxin protein [Salmonella typhimurium LT2] 13070.567018704834 2 115 M.STTIEKIQRQIAENPILLYMKGSPKLPSCGFSAQAVQALSACGERFAYVDILQNPDIRAELPKYANWPTFPQLWVDGELVGGCDIVIEMYQRGELQQLIKETAAKYKTQEPDAE. 0 72.0 52.0 9.642388314029482E-37 9.642388314029482E-37 0.0
/home/xiaowen/c_project/proteomics_cpp/testcases/data/st_no_digestion.msalign 1846 2633 3516 202 12 12160.524782953127 12160.430410581055 7986 gi|16767406|ref|NP_463021.1| 50S ribosomal subunit protein L7/L12 [Salmonella typhimurium LT2] 12291.470907407227 2 121 M.SITKDQIIEAVSAMSVMDVVELISAMEEKFGVSAAAAVAVAAGPAEAAEEKTEFDVILKAAGANKVAVIKAVRGATGLGLKEAKDLVESAPAALKEGVSKDDAEALKKSLEEAGAEVEVK. 0 87.0 63.0 1.508180009239636E-36 1.508180009239636E-36 0.0
/home/xiaowen/c_project/proteomics_cpp/testcases/data/st_no_digestion.msalign 1825 2597 3468 135 6 8103.051654156251 8102.998132901612 3764 gi|16765287|ref|NP_460902.1| putative cytoplasmic protein [Salmonella typhimurium LT2] 8234.038629727784 2 74 M.STPDFSTAENNQELATEVNCLKAMLTLMLQAMGQADAGRVILKMEKQIAQMDDEAQAAVFSSTVKQIKQAYRQ. 0 61.0 49.0 2.1169010144238885E-36 2.1169010144238885E-36 0.0
/home/xiaowen/c_project/proteomics_cpp/testcases/data/st_no_digestion.msalign 1822 2594 3464 130 6 8103.055316265626 8102.998132901612 3764 gi|16765287|ref|NP_460902.1| putative cytoplasmic protein [Salmonella typhimurium LT2] 8234.038629727784 2 74 M.STPDFSTAENNQELATEVNCLKAMLTLMLQAMGQADAGRVILKMEKQIAQMDDEAQAAVFSSTVKQIKQAYRQ. 0 61.0 47.0 2.1793622173314755E-36 2.1793622173314755E-36 0.0
/home/xiaowen/c_project/proteomics_cpp/testcases/data/st_no_digestion.msalign 1890 2735 3652 124 8 12201.492110375 12201.492110375 7986 gi|16767406|ref|NP_463021.1| 50S ribosomal subunit protein L7/L12 [Salmonella typhimurium LT2] 12291.470907407227 2 121 M.(SITKDQI)[42.01]IEAVSAMSVMDVVELISAMEEKFGVSAAAAVAVAAGPAEAAEEKT(E)[-.95]FDVILKAAGANKVAVIKAVRGATGLGLKEAKDLVESAPAALKEGVSKDDAEALKKSLEEAGAEVEVK. 1 55.0 50.0 9.07447763073252E-36 2.3647595090839965E-36 0.0
/home/xiaowen/c_project/proteomics_cpp/testcases/data/st_no_digestion.msalign 1728 2385 3186 159 8 11782.2002071875 11782.113416867676 7558 gi|16767191|ref|NP_462806.1| thioredoxin 1 [Salmonella typhimurium LT2] 11913.153913693848 2 109 M.SDKIIHLTDDSFDTDVLKADGAILVDFWAEWCGPCKMIAPILDEIADEYQGKLTVAKLNIDQNPGTAPKYGIRGIPTLLLFKNGEVAATKVGALSKGQLKEFLDANLA. 0 58.0 52.0 3.9326579641489465E-36 3.9326579641489465E-36 0.0
/home/xiaowen/c_project/proteomics_cpp/testcases/data/st_no_digestion.msalign 897 1318 1763 138 7 8323.096706320312 8323.048940854495 8154 gi|16767490|ref|NP_463105.1| putative cytoplasmic protein [Salmonella typhimurium LT2] 8454.089437680665 2 70 M.MNKDEAGGNWKQFKGKMKEQWGKLTDDDMTVIEGKRDQLVGKIQERYGYQKDQAEKEVVDWETRNNYRW. 0 63.0 59.0 3.1344436941451824E-36 6.268887388290365E-36 0.0
/home/xiaowen/c_project/proteomics_cpp/testcases/data/st_no_digestion.msalign 1843 2630 3512 142 8 12160.5087209375 12160.430410581055 7986 gi|16767406|ref|NP_463021.1| 50S ribosomal subunit protein L7/L12 [Salmonella typhimurium LT2] 12291.470907407227 2 121 M.SITKDQIIEAVSAMSVMDVVELISAMEEKFGVSAAAAVAVAAGPAEAAEEKTEFDVILKAAGANKVAVIKAVRGATGLGLKEAKDLVESAPAALKEGVSKDDAEALKKSLEEAGAEVEVK. 0 55.0 49.0 6.293935310893351E-36 6.293935310893351E-36 0.0
/home/xiaowen/c_project/proteomics_cpp/testcases/data/st_no_digestion.msalign 1726 2383 3183 146 9 11782.227721226562 11782.113416867674 7558 gi|16767191|ref|NP_462806.1| thioredoxin 1 [Salmonella typhimurium LT2] 11913.153913693848 2 109 M.SDKIIHLTDDSFDTDVLKADGAILVDFWAEWCGPCKMIAPILDEIADEYQGKLTVAKLNIDQNPGTAPKYGIRGIPTLLLFKNGEVAATKVGALSKGQLKEFLDANLA. 0 50.0 45.0 1.0124421191137591E-35 1.0124421191137591E-35 0.0
/home/xiaowen/c_project/proteomics_cpp/testcases/data/st_no_digestion.msalign 1630 2256 3014 145 10 9175.706644328127 9175.646864133301 7882 gi|16767354|ref|NP_462969.1| putative cytoplasmic protein [Salmonella typhimurium LT2] 9306.687360959473 2 79 M.SLEVFEKLEAKVQQAIDTITLLQMEIEELKEKNNSLTQEVQSAQHQREELERENNSLKEQQSGWQERLQALLGRMEEV. 0 82.0 58.0 2.440443592623266E-35 2.440443592623266E-35 0.0
/home/xiaowen/c_project/proteomics_cpp/testcases/data/st_no_digestion.msalign 1845 2632 3515 134 8 12160.5126271875 12160.430410581055 7986 gi|16767406|ref|NP_463021.1| 50S ribosomal subunit protein L7/L12 [Salmonella typhimurium LT2] 12291.470907407227 2 121 M.SITKDQIIEAVSAMSVMDVVELISAMEEKFGVSAAAAVAVAAGPAEAAEEKTEFDVILKAAGANKVAVIKAVRGATGLGLKEAKDLVESAPAALKEGVSKDDAEALKKSLEEAGAEVEVK. 0 51.0 47.0 3.2391574058866085E-35 3.2391574058866085E-35 0.0
/home/xiaowen/c_project/proteomics_cpp/testcases/data/st_no_digestion.msalign 895 1316 1760 138 8 8323.098097312499 8323.048940854493 8154 gi|16767490|ref|NP_463105.1| putative cytoplasmic protein [Salmonella typhimurium LT2] 8454.089437680665 2 70 M.MNKDEAGGNWKQFKGKMKEQWGKLTDDDMTVIEGKRDQLVGKIQERYGYQKDQAEKEVVDWETRNNYRW. 0 65.0 53.0 1.6805921127296123E-35 3.3611842254592245E-35 0.0
/home/xiaowen/c_project/proteomics_cpp/testcases/data/st_no_digestion.msalign 1876 2686 3587 155 9 12291.580168289061 12291.470907407227 7986 gi|16767406|ref|NP_463021.1| 50S ribosomal subunit protein L7/L12 [Salmonella typhimurium LT2] 12291.470907407227 1 121 .MSITKDQIIEAVSAMSVMDVVELISAMEEKFGVSAAAAVAVAAGPAEAAEEKTEFDVILKAAGANKVAVIKAVRGATGLGLKEAKDLVESAPAALKEGVSKDDAEALKKSLEEAGAEVEVK. 0 59.0 52.0 3.025319802177651E-35 6.050639604355303E-35 0.0
/home/xiaowen/c_project/proteomics_cpp/testcases/data/st_no_digestion.msalign 896 1317 1762 136 9 8323.093628929686 8323.048940854493 8154 gi|16767490|ref|NP_463105.1| putative cytoplasmic protein [Salmonella typhimurium LT2] 8454.089437680665 2 70 M.MNKDEAGGNWKQFKGKMKEQWGKLTDDDMTVIEGKRDQLVGKIQERYGYQKDQAEKEVVDWETRNNYRW. 0 69.0 54.0 3.8498374503653365E-35 7.699674900730673E-35 0.0
/home/xiaowen/c_project/proteomics_cpp/testcases/data/st_no_digestion.msalign 1781 2482 3315 125 7 8095.184881085937 8095.153410153809 4302 gi|16765556|ref|NP_461171.1| putative cytoplasmic protein [Salmonella typhimurium LT2] 8226.193906979981 2 75 M.PQLSRYSDEHVEQLLSELLSVLEKHKAPTDLSLMVLGNMVTNLINTSVAPAQRQAIANSFARALQSSISEDNAH. 0 65.0 54.0 2.2277399771342203E-34 2.2277399771342203E-34 0.0
/home/xiaowen/c_project/proteomics_cpp/testcases/data/st_no_digestion.msalign 1895 2741 3660 141 8 12201.50578225 12201.49578225 7986 gi|16767406|ref|NP_463021.1| 50S ribosomal subunit protein L7/L12 [Salmonella typhimurium LT2] 12291.470907407227 2 121 M.(SITK)[42.01]DQIIEAVSAMSVMDVVELISAMEEKFGVSAAAAVAVAAGPAEAAEEKTEFDVILKAAGANKVAVIKAVRGAT(GLG)[-.95]LKEAKDLVESAPAALKEGVSKDDAEALKKSLEEAGAEVEVK. 1 60.0 55.0 1.200238911108954E-33 3.288897395485029E-34 0.0
/home/xiaowen/c_project/proteomics_cpp/testcases/data/st_no_digestion.msalign 1623 2249 3004 146 10 9175.715189250002 9175.646864133301 7882 gi|16767354|ref|NP_462969.1| putative cytoplasmic protein [Salmonella typhimurium LT2] 9306.687360959473 2 79 M.SLEVFEKLEAKVQQAIDTITLLQMEIEELKEKNNSLTQEVQSAQHQREELERENNSLKEQQSGWQERLQALLGRMEEV. 0 82.0 57.0 5.311442824930731E-34 5.311442824930731E-34 0.0
/home/xiaowen/c_project/proteomics_cpp/testcases/data/st_no_digestion.msalign 1777 2478 3310 130 7 8095.212224835937 8095.153410153809 4302 gi|16765556|ref|NP_461171.1| putative cytoplasmic protein [Salmonella typhimurium LT2] 8226.193906979981 2 75 M.PQLSRYSDEHVEQLLSELLSVLEKHKAPTDLSLMVLGNMVTNLINTSVAPAQRQAIANSFARALQSSISEDNAH. 0 63.0 54.0 7.049987144780163E-34 7.049987144780163E-34 0.0
/home/xiaowen/c_project/proteomics_cpp/testcases/data/st_no_digestion.msalign 657 1070 1432 168 13 11178.299798410155 11178.26911755127 6618 gi|16766718|ref|NP_462333.1| 50S ribosomal subunit protein L24 [Salmonella typhimurium LT2] 11309.309614377442 2 104 M.AAKIRRDDEVIVLTGKDKGKRGKVKNVLSSGKVIVEGINLVKKHQKPVPALNQPGGIVEKEAAIQVSNVAIFNAATGKADRVGFRFEDGKKVRFFKSNSETIK. 0 66.0 43.0 7.6215487104934695E-34 7.6215487104934695E-34 0.0
/home/xiaowen/c_project/proteomics_cpp/testcases/data/st_no_digestion.msalign 426 832 1115 132 8 7942.011717124999 7941.9762403540035 7898 gi|16767362|ref|NP_462977.1| 50S ribosomal subunit protein L31 [Salmonella typhimurium LT2] 7941.9762403540035 1 70 .MKKGIHPNYVEITATCSCGNVIKTHSTVGHDLNLDVCGKCHPFFTGKQRVVDTGGRVERFNKRFSIPGSK. 0 69.0 50.0 4.695870981327256E-34 9.391741962654512E-34 0.0
/home/xiaowen/c_project/proteomics_cpp/testcases/data/st_no_digestion.msalign 898 1319 1764 134 7 8323.096706320312 8323.048940854495 8154 gi|16767490|ref|NP_463105.1| putative cytoplasmic protein [Salmonella typhimurium LT2] 8454.089437680665 2 70 M.MNKDEAGGNWKQFKGKMKEQWGKLTDDDMTVIEGKRDQLVGKIQERYGYQKDQAEKEVVDWETRNNYRW. 0 60.0 55.0 5.575732155066639E-34 1.1151464310133277E-33 0.0
/home/xiaowen/c_project/proteomics_cpp/testcases/data/st_no_digestion.msalign 750 1166 1560 171 14 10278.690207976562 10278.658636289063 6632 gi|16766725|ref|NP_462340.1| 30S ribosomal subunit protein S19 [Salmonella typhimurium LT2] 10409.699133115235 2 92 M.PRSLKKGPFIDLHLLKKVEKAVESGDKKPLRTWSRRSTIFPNMIGLTIAVHNGRQHVPVFVSDEMVGHKLGEFAPTRTYRGHAADKKAKKK. 0 61.0 44.0 1.2710113631422887E-33 1.2710113631422887E-33 0.0
/home/xiaowen/c_project/proteomics_cpp/testcases/data/st_no_digestion.msalign 656 1069 1431 184 13 11178.299798410155 11178.26911755127 6618 gi|16766718|ref|NP_462333.1| 50S ribosomal subunit protein L24 [Salmonella typhimurium LT2] 11309.309614377442 2 104 M.AAKIRRDDEVIVLTGKDKGKRGKVKNVLSSGKVIVEGINLVKKHQKPVPALNQPGGIVEKEAAIQVSNVAIFNAATGKADRVGFRFEDGKKVRFFKSNSETIK. 0 71.0 47.0 1.5417813592116124E-33 1.5417813592116124E-33 0.0
/home/xiaowen/c_project/proteomics_cpp/testcases/data/st_no_digestion.msalign 1639 2265 3026 144 9 9175.722587320312 9175.646864133301 7882 gi|16767354|ref|NP_462969.1| putative cytoplasmic protein [Salmonella typhimurium LT2] 9306.687360959473 2 79 M.SLEVFEKLEAKVQQAIDTITLLQMEIEELKEKNNSLTQEVQSAQHQREELERENNSLKEQQSGWQERLQALLGRMEEV. 0 78.0 57.0 1.6443185606592014E-33 1.6443185606592014E-33 0.0
/home/xiaowen/c_project/proteomics_cpp/testcases/data/st_no_digestion.msalign 901 1322 1768 138 8 8323.106886374999 8323.048940854493 8154 gi|16767490|ref|NP_463105.1| putative cytoplasmic protein [Salmonella typhimurium LT2] 8454.089437680665 2 70 M.MNKDEAGGNWKQFKGKMKEQWGKLTDDDMTVIEGKRDQLVGKIQERYGYQKDQAEKEVVDWETRNNYRW. 0 64.0 51.0 8.521116259489703E-34 1.7042232518979406E-33 0.0
/home/xiaowen/c_project/proteomics_cpp/testcases/data/st_no_digestion.msalign 424 830 1112 132 8 7942.051756187499 7941.9762403540035 7898 gi|16767362|ref|NP_462977.1| 50S ribosomal subunit protein L31 [Salmonella typhimurium LT2] 7941.9762403540035 1 70 .MKKGIHPNYVEITATCSCGNVIKTHSTVGHDLNLDVCGKCHPFFTGKQRVVDTGGRVERFNKRFSIPGSK. 0 66.0 50.0 1.8474826636229543E-33 3.6949653272459086E-33 0.0
/home/xiaowen/c_project/proteomics_cpp/testcases/data/st_no_digestion.msalign 1082 1534 2051 121 6 7315.7812550781255 7315.736898618163 1216 gi|16764006|ref|NP_459621.1| negative regulator [Salmonella typhimurium LT2] 7446.7773954443355 2 69 M.SKIKGNVKWFNESKGFGFITPEDGSKDVFVHFSAIQTNGFKTLAEGQRVEFEITNGAKGPSAANVTAL. 0 56.0 43.0 2.1958364803529576E-33 4.391672960705915E-33 0.0
/home/xiaowen/c_project/proteomics_cpp/testcases/data/st_no_digestion.msalign 423 829 1111 132 8 7942.051756187499 7941.9762403540035 7898 gi|16767362|ref|NP_462977.1| 50S ribosomal subunit protein L31 [Salmonella typhimurium LT2] 7941.9762403540035 1 70 .MKKGIHPNYVEITATCSCGNVIKTHSTVGHDLNLDVCGKCHPFFTGKQRVVDTGGRVERFNKRFSIPGSK. 0 65.0 49.0 2.4638270569751116E-33 4.927654113950223E-33 0.0
/home/xiaowen/c_project/proteomics_cpp/testcases/data/st_no_digestion.msalign 416 822 1102 132 10 7941.990085046876 7941.9762403540035 7898 gi|16767362|ref|NP_462977.1| 50S ribosomal subunit protein L31 [Salmonella typhimurium LT2] 7941.9762403540035 1 70 .MKKGIHPNYVEITATCSCGNVIKTHSTVGHDLNLDVCGKCHPFFTGKQRVVDTGGRVERFNKRFSIPGSK. 0 63.0 47.0 2.863123290532238E-33 5.726246581064476E-33 0.0
/home/xiaowen/c_project/proteomics_cpp/testcases/data/st_no_digestion.msalign 894 1315 1759 133 9 8323.095826195311 8323.048940854493 8154 gi|16767490|ref|NP_463105.1| putative cytoplasmic protein [Salmonella typhimurium LT2] 8454.089437680665 2 70 M.MNKDEAGGNWKQFKGKMKEQWGKLTDDDMTVIEGKRDQLVGKIQERYGYQKDQAEKEVVDWETRNNYRW. 0 61.0 52.0 5.021481899121909E-33 1.0042963798243818E-32 0.0
/home/xiaowen/c_project/proteomics_cpp/testcases/data/st_no_digestion.msalign 1780 2481 3314 125 7 8095.184881085937 8095.153410153809 4302 gi|16765556|ref|NP_461171.1| putative cytoplasmic protein [Salmonella typhimurium LT2] 8226.193906979981 2 75 M.PQLSRYSDEHVEQLLSELLSVLEKHKAPTDLSLMVLGNMVTNLINTSVAPAQRQAIANSFARALQSSISEDNAH. 0 65.0 52.0 1.5771867196788668E-32 1.5771867196788668E-32 0.0
/home/xiaowen/c_project/proteomics_cpp/testcases/data/st_no_digestion.msalign 1871 2671 3567 167 10 12291.582291703127 12291.470907407225 7986 gi|16767406|ref|NP_463021.1| 50S ribosomal subunit protein L7/L12 [Salmonella typhimurium LT2] 12291.470907407227 1 121 .MSITKDQIIEAVSAMSVMDVVELISAMEEKFGVSAAAAVAVAAGPAEAAEEKTEFDVILKAAGANKVAVIKAVRGATGLGLKEAKDLVESAPAALKEGVSKDDAEALKKSLEEAGAEVEVK. 0 74.0 59.0 9.05028386777565E-33 1.81005677355513E-32 0.0
/home/xiaowen/c_project/proteomics_cpp/testcases/data/st_no_digestion.msalign 1622 2248 3003 143 9 9175.713248941405 9175.646864133301 7882 gi|16767354|ref|NP_462969.1| putative cytoplasmic protein [Salmonella typhimurium LT2] 9306.687360959473 2 79 M.SLEVFEKLEAKVQQAIDTITLLQMEIEELKEKNNSLTQEVQSAQHQREELERENNSLKEQQSGWQERLQALLGRMEEV. 0 74.0 54.0 2.238549295404139E-32 2.238549295404139E-32 0.0
/home/xiaowen/c_project/proteomics_cpp/testcases/data/st_no_digestion.msalign 1628 2254 3011 144 10 9175.751810343752 9175.646864133301 7882 gi|16767354|ref|NP_462969.1| putative cytoplasmic protein [Salmonella typhimurium LT2] 9306.687360959473 2 79 M.SLEVFEKLEAKVQQAIDTITLLQMEIEELKEKNNSLTQEVQSAQHQREELERENNSLKEQQSGWQERLQALLGRMEEV. 0 69.0 52.0 3.0288921416753076E-32 3.0288921416753076E-32 0.0
/home/xiaowen/c_project/proteomics_cpp/testcases/data/st_no_digestion.msalign 892 1313 1756 138 8 8323.091261374999 8323.048940854493 8154 gi|16767490|ref|NP_463105.1| putative cytoplasmic protein [Salmonella typhimurium LT2] 8454.089437680665 2 70 M.MNKDEAGGNWKQFKGKMKEQWGKLTDDDMTVIEGKRDQLVGKIQERYGYQKDQAEKEVVDWETRNNYRW. 0 63.0 51.0 1.8025068242528254E-32 3.605013648505651E-32 0.0
/home/xiaowen/c_project/proteomics_cpp/testcases/data/st_no_digestion.msalign 1935 2865 3826 144 9 9972.992058046875 9972.923879819336 4604 gi|16765707|ref|NP_461322.1| putative cytoplasmic protein [Salmonella typhimurium LT2] 9972.923879819336 1 91 .MIAEFESRILALIDDMVEHASDDELFASGYLRGHLTLAIAELESGDDHSVEAVYANVSQSLEKAIGAGELSPRDQALVKAMWDNLFDKAKQ. 0 61.0 52.0 2.3271008105298775E-32 4.654201621059755E-32 0.0
/home/xiaowen/c_project/proteomics_cpp/testcases/data/st_no_digestion.msalign 1901 2755 3679 184 9 12201.575776757812 12201.570776757813 7986 gi|16767406|ref|NP_463021.1| 50S ribosomal subunit protein L7/L12 [Salmonella typhimurium LT2] 12291.470907407227 2 121 M.(SITKD)[42.01]QIIEAVSAMSVMDVVELISAMEEKFGVSAAAAVAVAAGPAEA(A)[-.87]EEKTEFDVILKAAGANKVAVIKAVRGATGLGLKEAKDLVESAPAALKEGVSKDDAEALKKSLEEAGAEVEVK. 1 60.0 53.0 1.6871706524554468E-31 4.6545388568607023E-32 0.0
/home/xiaowen/c_project/proteomics_cpp/testcases/data/st_no_digestion.msalign 907 1328 1776 138 8 8323.085401999999 8323.048940854493 8154 gi|16767490|ref|NP_463105.1| putative cytoplasmic protein [Salmonella typhimurium LT2] 8454.089437680665 2 70 M.MNKDEAGGNWKQFKGKMKEQWGKLTDDDMTVIEGKRDQLVGKIQERYGYQKDQAEKEVVDWETRNNYRW. 0 66.0 55.0 2.687130356943634E-32 5.374260713887268E-32 0.0
/home/xiaowen/c_project/proteomics_cpp/testcases/data/st_no_digestion.msalign 1624 2250 3006 146 9 9175.735221597655 9175.646864133301 7882 gi|16767354|ref|NP_462969.1| putative cytoplasmic protein [Salmonella typhimurium LT2] 9306.687360959473 2 79 M.SLEVFEKLEAKVQQAIDTITLLQMEIEELKEKNNSLTQEVQSAQHQREELERENNSLKEQQSGWQERLQALLGRMEEV. 0 73.0 53.0 5.913335181103068E-32 5.913335181103068E-32 0.0
/home/xiaowen/c_project/proteomics_cpp/testcases/data/st_no_digestion.msalign 1037 1469 1964 173 13 10534.66054774219 10534.588689999999 4296 gi|16765553|ref|NP_461168.1| 50S ribosomal subunit protein L25 [Salmonella typhimurium LT2] 10534.58869 1 94 .MFTINAEVRKEQGKGASRRLRAANKFPAIIYGGSEAPIAIELDHDQVMNMQAKAEFYSEVLTLVVDGKEVKVKAQAVQRHAYKPKLTHIDFVRA. 0 74.0 48.0 3.314532748031566E-32 6.629065496063131E-32 0.0
/home/xiaowen/c_project/proteomics_cpp/testcases/data/st_no_digestion.msalign 1852 2640 3526 166 10 12159.544950187503 12159.544950187503 7986 gi|16767406|ref|NP_463021.1| 50S ribosomal subunit protein L7/L12 [Salmonella typhimurium LT2] 12291.470907407227 2 121 M.SITKDQIIEAVSAMSVMDVVELISAMEEKFGVSAAAAVAVAAGPAEA(AEEKTEFDVILKAAGANKVAV)[1083.76]IKAVRGAT(GLGLKEAKDLVE)[-1084.65]SAPAALKEGVSKDDAEALKKSLEEAGAEVEVK. 2 89.0 74.0 1.7292494524722207E-35 9.219735901494161E-32 0.0
/home/xiaowen/c_project/proteomics_cpp/testcases/data/st_no_digestion.msalign 418 824 1104 132 10 7941.990085046876 7941.9762403540035 7898 gi|16767362|ref|NP_462977.1| 50S ribosomal subunit protein L31 [Salmonella typhimurium LT2] 7941.9762403540035 1 70 .MKKGIHPNYVEITATCSCGNVIKTHSTVGHDLNLDVCGKCHPFFTGKQRVVDTGGRVERFNKRFSIPGSK. 0 63.0 48.0 4.7666845036338656E-32 9.533369007267731E-32 0.0
/home/xiaowen/c_project/proteomics_cpp/testcases/data/st_no_digestion.msalign 1779 2480 3312 125 8 8095.21288340625 8095.153410153809 4302 gi|16765556|ref|NP_461171.1| putative cytoplasmic protein [Salmonella typhimurium LT2] 8226.193906979981 2 75 M.PQLSRYSDEHVEQLLSELLSVLEKHKAPTDLSLMVLGNMVTNLINTSVAPAQRQAIANSFARALQSSISEDNAH. 0 69.0 51.0 1.4992907016902554E-31 1.4992907016902554E-31 0.0
/home/xiaowen/c_project/proteomics_cpp/testcases/data/st_no_digestion.msalign 1828 2601 3474 133 6 8103.061908062501 8102.998132901612 3764 gi|16765287|ref|NP_460902.1| putative cytoplasmic protein [Salmonella typhimurium LT2] 8234.038629727784 2 74 M.STPDFSTAENNQELATEVNCLKAMLTLMLQAMGQADAGRVILKMEKQIAQMDDEAQAAVFSSTVKQIKQAYRQ. 0 56.0 45.0 1.7053793602041366E-31 1.7053793602041366E-31 0.0
/home/xiaowen/c_project/proteomics_cpp/testcases/data/st_no_digestion.msalign 1048 1484 1984 121 7 7267.62285503125 7267.58753033203 7050 gi|16766935|ref|NP_462550.1| major cold shock protein [Salmonella typhimurium LT2] 7398.628027158203 2 70 M.SGKMTGIVKWFNADKGFGFITPDDGSKDVFVHFSAIQNDGYKSLDEGQKVSFTIESGAKGPAAGNVTSL. 0 63.0 46.0 2.321109523713673E-31 2.321109523713673E-31 0.0
/home/xiaowen/c_project/proteomics_cpp/testcases/data/st_no_digestion.msalign 1036 1468 1963 165 16 10534.6759511875 10534.58869 4296 gi|16765553|ref|NP_461168.1| 50S ribosomal subunit protein L25 [Salmonella typhimurium LT2] 10534.58869 1 94 .MFTINAEVRKEQGKGASRRLRAANKFPAIIYGGSEAPIAIELDHDQVMNMQAKAEFYSEVLTLVVDGKEVKVKAQAVQRHAYKPKLTHIDFVRA. 0 70.0 42.0 1.2448491026295744E-31 2.4896982052591488E-31 0.0
/home/xiaowen/c_project/proteomics_cpp/testcases/data/st_no_digestion.msalign 1642 2268 3030 147 8 9175.7307178125 9175.646864133301 7882 gi|16767354|ref|NP_462969.1| putative cytoplasmic protein [Salmonella typhimurium LT2] 9306.687360959473 2 79 M.SLEVFEKLEAKVQQAIDTITLLQMEIEELKEKNNSLTQEVQSAQHQREELERENNSLKEQQSGWQERLQALLGRMEEV. 0 73.0 58.0 2.6273091911931062E-31 2.6273091911931062E-31 0.0
/home/xiaowen/c_project/proteomics_cpp/testcases/data/st_no_digestion.msalign 902 1323 1770 138 7 8323.100978781249 8323.048940854495 8154 gi|16767490|ref|NP_463105.1| putative cytoplasmic protein [Salmonella typhimurium LT2] 8454.089437680665 2 70 M.MNKDEAGGNWKQFKGKMKEQWGKLTDDDMTVIEGKRDQLVGKIQERYGYQKDQAEKEVVDWETRNNYRW. 0 56.0 51.0 1.7302550202516007E-31 3.4605100405032013E-31 0.0
/home/xiaowen/c_project/proteomics_cpp/testcases/data/st_no_digestion.msalign 1900 2748 3670 102 8 12202.4950400625 12202.440977292481 7986 gi|16767406|ref|NP_463021.1| 50S ribosomal subunit protein L7/L12 [Salmonella typhimurium LT2] 12291.470907407227 2 121 M.(S)[42.01]ITKDQIIEAVSAMSVMDVVELISAMEEKFGVSAAAAVAVAAGPAEAAEEKTEFDVILKAAGANKVAVIKAVRGATGLGLKEAKDLVESAPAALKEGVSKDDAEALKKSLEEAGAEVEVK. 0 47.0 44.0 3.712683743386272E-31 3.712683743386272E-31 0.0
/home/xiaowen/c_project/proteomics_cpp/testcases/data/st_no_digestion.msalign 1621 2247 3002 151 9 9175.713248941405 9175.646864133301 7882 gi|16767354|ref|NP_462969.1| putative cytoplasmic protein [Salmonella typhimurium LT2] 9306.687360959473 2 79 M.SLEVFEKLEAKVQQAIDTITLLQMEIEELKEKNNSLTQEVQSAQHQREELERENNSLKEQQSGWQERLQALLGRMEEV. 0 74.0 53.0 5.56519993019623E-31 5.56519993019623E-31 0.0
/home/xiaowen/c_project/proteomics_cpp/testcases/data/st_no_digestion.msalign 1734 2391 3194 134 7 11782.169275179687 11782.113416867676 7558 gi|16767191|ref|NP_462806.1| thioredoxin 1 [Salmonella typhimurium LT2] 11913.153913693848 2 109 M.SDKIIHLTDDSFDTDVLKADGAILVDFWAEWCGPCKMIAPILDEIADEYQGKLTVAKLNIDQNPGTAPKYGIRGIPTLLLFKNGEVAATKVGALSKGQLKEFLDANLA. 0 52.0 50.0 8.515901636949582E-31 8.515901636949582E-31 0.0
/home/xiaowen/c_project/proteomics_cpp/testcases/data/st_no_digestion.msalign 1934 2864 3824 119 9 9972.993156679688 9972.923879819336 4604 gi|16765707|ref|NP_461322.1| putative cytoplasmic protein [Salmonella typhimurium LT2] 9972.923879819336 1 91 .MIAEFESRILALIDDMVEHASDDELFASGYLRGHLTLAIAELESGDDHSVEAVYANVSQSLEKAIGAGELSPRDQALVKAMWDNLFDKAKQ. 0 54.0 48.0 4.893434228618846E-31 9.786868457237692E-31 0.0
/home/xiaowen/c_project/proteomics_cpp/testcases/data/st_no_digestion.msalign 833 1251 1674 145 11 10406.176834726562 10406.176834726562 1966 gi|16764378|ref|NP_459993.1| hypothetical protein STM1018 [Phage Gifsy-2] 11265.5324689917 8 96 L.MYQRMIFEEGKEPRLYSSQHDSKFIPISNNNGKVQKVPV(MELKD)[34.04]TRGDVFYAYNYAYSGKKPSNDEIYKAIDELKPIGEKFEMSKTISD. 1 57.0 48.0 4.172885371839768E-32 9.82720197954175E-31 0.0
/home/xiaowen/c_project/proteomics_cpp/testcases/data/st_no_digestion.msalign 654 1065 1426 137 16 11178.302323437498 11178.26911755127 6618 gi|16766718|ref|NP_462333.1| 50S ribosomal subunit protein L24 [Salmonella typhimurium LT2] 11309.309614377442 2 104 M.AAKIRRDDEVIVLTGKDKGKRGKVKNVLSSGKVIVEGINLVKKHQKPVPALNQPGGIVEKEAAIQVSNVAIFNAATGKADRVGFRFEDGKKVRFFKSNSETIK. 0 57.0 37.0 9.95340728667423E-31 9.95340728667423E-31 0.0
/home/xiaowen/c_project/proteomics_cpp/testcases/data/st_no_digestion.msalign 1144 1617 2162 205 13 12762.063170726562 12761.967558103028 6608 gi|16766713|ref|NP_462328.1| 50S ribosomal subunit protein L18 [Salmonella typhimurium LT2] 12761.967558103028 1 117 .MDKKSARIRRATRARRKLKELGATRLVVHRTPRHIYAQVIAPNGSEVLVAASTVEKAIAEQLKYTGNKDAAAAVGKAVAERALEKGIKDVSFDRSGFQYHGRVQALADAAREAGLQF. 0 57.0 46.0 5.176412862493354E-31 1.0352825724986708E-30 0.0
/home/xiaowen/c_project/proteomics_cpp/testcases/data/st_no_digestion.msalign 1422 1964 2624 149 7 9113.808578453125 9113.737188535157 4692 gi|16765751|ref|NP_461366.1| phosphohistidinoprotein-hexose phosphotransferase [Salmonella typhimurium LT2] 9113.737188535157 1 85 .MFQQEVTITAPNGLHTRPAAQFVKEAKGFTSEITVTSNGKSASAKSLFKLQTLGLTQGTVVTISAEGEDEQKAVEHLVKLMAELE. 0 49.0 47.0 5.252326787741721E-31 1.0504653575483442E-30 0.0
/home/xiaowen/c_project/proteomics_cpp/testcases/data/st_no_digestion.msalign 1893 2739 3658 168 10 12202.524677515627 12202.440977292483 7986 gi|16767406|ref|NP_463021.1| 50S ribosomal subunit protein L7/L12 [Salmonella typhimurium LT2] 12291.470907407227 2 121 M.(S)[42.01]ITKDQIIEAVSAMSVMDVVELISAMEEKFGVSAAAAVAVAAGPAEAAEEKTEFDVILKAAGANKVAVIKAVRGATGLGLKEAKDLVESAPAALKEGVSKDDAEALKKSLEEAGAEVEVK. 0 81.0 60.0 1.4688476605745206E-30 1.4688476605745206E-30 0.0
/home/xiaowen/c_project/proteomics_cpp/testcases/data/st_no_digestion.msalign 425 831 1114 132 9 7942.005905968751 7941.9762403540035 7898 gi|16767362|ref|NP_462977.1| 50S ribosomal subunit protein L31 [Salmonella typhimurium LT2] 7941.9762403540035 1 70 .MKKGIHPNYVEITATCSCGNVIKTHSTVGHDLNLDVCGKCHPFFTGKQRVVDTGGRVERFNKRFSIPGSK. 0 61.0 45.0 9.625496346370039E-31 1.9250992692740078E-30 0.0
/home/xiaowen/c_project/proteomics_cpp/testcases/data/st_no_digestion.msalign 1049 1485 1986 121 8 7267.63852825 7267.587530332031 7050 gi|16766935|ref|NP_462550.1| major cold shock protein [Salmonella typhimurium LT2] 7398.628027158203 2 70 M.SGKMTGIVKWFNADKGFGFITPDDGSKDVFVHFSAIQNDGYKSLDEGQKVSFTIESGAKGPAAGNVTSL. 0 61.0 40.0 3.372378882578686E-30 3.372378882578686E-30 0.0
/home/xiaowen/c_project/proteomics_cpp/testcases/data/st_no_digestion.msalign 905 1326 1774 132 7 8323.093288351562 8323.048940854495 8154 gi|16767490|ref|NP_463105.1| putative cytoplasmic protein [Salmonella typhimurium LT2] 8454.089437680665 2 70 M.MNKDEAGGNWKQFKGKMKEQWGKLTDDDMTVIEGKRDQLVGKIQERYGYQKDQAEKEVVDWETRNNYRW. 0 54.0 50.0 3.737337660578295E-30 7.47467532115659E-30 0.0
/home/xiaowen/c_project/proteomics_cpp/testcases/data/st_no_digestion.msalign 429 835 1119 132 8 7942.007810874999 7941.9762403540035 7898 gi|16767362|ref|NP_462977.1| 50S ribosomal subunit protein L31 [Salmonella typhimurium LT2] 7941.9762403540035 1 70 .MKKGIHPNYVEITATCSCGNVIKTHSTVGHDLNLDVCGKCHPFFTGKQRVVDTGGRVERFNKRFSIPGSK. 0 66.0 48.0 4.47877797763252E-30 8.95755595526504E-30 0.0
/home/xiaowen/c_project/proteomics_cpp/testcases/data/st_no_digestion.msalign 1033 1465 1959 170 14 10534.648144789066 10534.58869 4296 gi|16765553|ref|NP_461168.1| 50S ribosomal subunit protein L25 [Salmonella typhimurium LT2] 10534.58869 1 94 .MFTINAEVRKEQGKGASRRLRAANKFPAIIYGGSEAPIAIELDHDQVMNMQAKAEFYSEVLTLVVDGKEVKVKAQAVQRHAYKPKLTHIDFVRA. 0 71.0 44.0 4.732430259948385E-30 9.46486051989677E-30 0.0
/home/xiaowen/c_project/proteomics_cpp/testcases/data/st_no_digestion.msalign 754 1170 1566 171 14 10278.692771453125 10278.658636289063 6632 gi|16766725|ref|NP_462340.1| 30S ribosomal subunit protein S19 [Salmonella typhimurium LT2] 10409.699133115235 2 92 M.PRSLKKGPFIDLHLLKKVEKAVESGDKKPLRTWSRRSTIFPNMIGLTIAVHNGRQHVPVFVSDEMVGHKLGEFAPTRTYRGHAADKKAKKK. 0 56.0 40.0 9.905175089864173E-30 9.905175089864173E-30 0.0
/home/xiaowen/c_project/proteomics_cpp/testcases/data/st_no_digestion.msalign 1023 1455 1946 121 7 7266.773489796875 7266.748489796875 3554 gi|16765178|ref|NP_460793.1| cold shock protein [Salmonella typhimurium LT2] 7397.761007504882 1 69 .MAKIKGQV(KW)[-131.01]FNESKGFGFITPADGSKDVFVHFSAIQGNGFKTLAEGQNVEFEIQDGQKGPAAVNVTAI. 1 79.0 50.0 4.627610947275789E-29 1.1422545752902383E-29 0.0
/home/xiaowen/c_project/proteomics_cpp/testcases/data/st_no_digestion.msalign 890 1311 1754 133 8 8323.091261374999 8323.048940854493 8154 gi|16767490|ref|NP_463105.1| putative cytoplasmic protein [Salmonella typhimurium LT2] 8454.089437680665 2 70 M.MNKDEAGGNWKQFKGKMKEQWGKLTDDDMTVIEGKRDQLVGKIQERYGYQKDQAEKEVVDWETRNNYRW. 0 58.0 50.0 6.373295695007405E-30 1.274659139001481E-29 0.0
/home/xiaowen/c_project/proteomics_cpp/testcases/data/st_no_digestion.msalign 1891 2736 3654 203 11 12202.555487453128 12202.440977292481 7986 gi|16767406|ref|NP_463021.1| 50S ribosomal subunit protein L7/L12 [Salmonella typhimurium LT2] 12291.470907407227 2 121 M.(S)[42.01]ITKDQIIEAVSAMSVMDVVELISAMEEKFGVSAAAAVAVAAGPAEAAEEKTEFDVILKAAGANKVAVIKAVRGATGLGLKEAKDLVESAPAALKEGVSKDDAEALKKSLEEAGAEVEVK. 0 80.0 57.0 1.379005095560559E-29 1.379005095560559E-29 0.0
/home/xiaowen/c_project/proteomics_cpp/testcases/data/st_no_digestion.msalign 755 1171 1567 123 13 10278.701695402344 10278.658636289063 6632 gi|16766725|ref|NP_462340.1| 30S ribosomal subunit protein S19 [Salmonella typhimurium LT2] 10409.699133115235 2 92 M.PRSLKKGPFIDLHLLKKVEKAVESGDKKPLRTWSRRSTIFPNMIGLTIAVHNGRQHVPVFVSDEMVGHKLGEFAPTRTYRGHAADKKAKKK. 0 47.0 38.0 1.6706707103262132E-29 1.6706707103262132E-29 0.0
/home/xiaowen/c_project/proteomics_cpp/testcases/data/st_no_digestion.msalign 1600 2216 2960 79 9 8553.386233503905 8553.319486813965 2166 gi|16764476|ref|NP_460091.1| putative cytoplasmic protein [Salmonella typhimurium LT2] 8684.359983640137 2 75 M.PTQEAKAHRVGEWASLRNTSPEIAEAIFEVAHYDEKLAEKIWEEGSDEVLIKAFEKTDKDSLFWGEQIIERKNV. 0 43.0 37.0 2.1762860678103246E-29 2.1762860678103246E-29 0.0
/home/xiaowen/c_project/proteomics_cpp/testcases/data/st_no_digestion.msalign 1844 2631 3514 202 15 12159.539087765625 12159.499087765624 7986 gi|16767406|ref|NP_463021.1| 50S ribosomal subunit protein L7/L12 [Salmonella typhimurium LT2] 12291.470907407227 2 121 M.SITKDQIIEAVSAMSVMDVVELISAMEEKFGVSAAAAVAVAAGPAEAAEEKTEFDVILKAAGANKVAVIKAVRGATGLGLKEAK(DLV)[-.93]ESAPAALKEGVSKDDAEALKKSLEEAGAEVEVK. 1 74.0 50.0 1.5179291019286723E-28 2.8362385263572763E-29 0.0
/home/xiaowen/c_project/proteomics_cpp/testcases/data/st_no_digestion.msalign 1024 1456 1947 121 7 7266.773489796875 7266.748489796875 3554 gi|16765178|ref|NP_460793.1| cold shock protein [Salmonella typhimurium LT2] 7397.761007504882 1 69 .MAKIKGQV(KW)[-131.01]FNESKGFGFITPADGSKDVFVHFSAIQGNGFKTLAEGQNVEFEIQDGQKGPAAVNVTAI. 1 76.0 50.0 1.2490119215295733E-28 3.082993791427259E-29 0.0
/home/xiaowen/c_project/proteomics_cpp/testcases/data/st_no_digestion.msalign 1038 1470 1966 163 14 10534.643872328128 10534.58869 4296 gi|16765553|ref|NP_461168.1| 50S ribosomal subunit protein L25 [Salmonella typhimurium LT2] 10534.58869 1 94 .MFTINAEVRKEQGKGASRRLRAANKFPAIIYGGSEAPIAIELDHDQVMNMQAKAEFYSEVLTLVVDGKEVKVKAQAVQRHAYKPKLTHIDFVRA. 0 72.0 43.0 1.762456210368018E-29 3.524912420736036E-29 0.0
/home/xiaowen/c_project/proteomics_cpp/testcases/data/st_no_digestion.msalign 1645 2271 3034 120 10 9175.688944132815 9175.646864133301 7882 gi|16767354|ref|NP_462969.1| putative cytoplasmic protein [Salmonella typhimurium LT2] 9306.687360959473 2 79 M.SLEVFEKLEAKVQQAIDTITLLQMEIEELKEKNNSLTQEVQSAQHQREELERENNSLKEQQSGWQERLQALLGRMEEV. 0 60.0 47.0 6.255872334452719E-29 6.255872334452719E-29 0.0
/home/xiaowen/c_project/proteomics_cpp/testcases/data/st_no_digestion.msalign 1238 1726 2307 149 10 11205.283701578126 11205.283701578126 6636 gi|16766727|ref|NP_462342.1| 50S ribosomal subunit protein L23 [Salmonella typhimurium LT2] 11206.238477902833 1 100 .MIREERLLKVLRAPHVSEKASTAMEKTNTIVLKVAKDATKAEIKAAVQKLFEVE(V)[-.95]EVVNTLVVKGKVKRHGQRIGRRSDWKKAYVTLKEGQNLDFVGGAE. 1 53.0 46.0 5.496167626949604E-28 7.526464413226203E-29 0.0
/home/xiaowen/c_project/proteomics_cpp/testcases/data/st_no_digestion.msalign 1026 1458 1950 121 8 7266.7664579375 7266.746457937499 3554 gi|16765178|ref|NP_460793.1| cold shock protein [Salmonella typhimurium LT2] 7397.761007504882 1 69 .MAKIKGQV(KW)[-131.01]FNESKGFGFITPADGSKDVFVHFSAIQGNGFKTLAEGQNVEFEIQDGQKGPAAVNVTAI. 1 77.0 46.0 3.2942107630875697E-28 8.1312525166409E-29 0.0
/home/xiaowen/c_project/proteomics_cpp/testcases/data/st_no_digestion.msalign 1149 1622 2168 202 12 12762.048351999998 12761.967558103028 6608 gi|16766713|ref|NP_462328.1| 50S ribosomal subunit protein L18 [Salmonella typhimurium LT2] 12761.967558103028 1 117 .MDKKSARIRRATRARRKLKELGATRLVVHRTPRHIYAQVIAPNGSEVLVAASTVEKAIAEQLKYTGNKDAAAAVGKAVAERALEKGIKDVSFDRSGFQYHGRVQALADAAREAGLQF. 0 63.0 47.0 4.1309113566101595E-29 8.261822713220319E-29 0.0
/home/xiaowen/c_project/proteomics_cpp/testcases/data/st_no_digestion.msalign 421 827 1108 132 9 7942.002060753907 7941.9762403540035 7898 gi|16767362|ref|NP_462977.1| 50S ribosomal subunit protein L31 [Salmonella typhimurium LT2] 7941.9762403540035 1 70 .MKKGIHPNYVEITATCSCGNVIKTHSTVGHDLNLDVCGKCHPFFTGKQRVVDTGGRVERFNKRFSIPGSK. 0 58.0 44.0 5.046394259077784E-29 1.0092788518155568E-28 0.0
/home/xiaowen/c_project/proteomics_cpp/testcases/data/st_no_digestion.msalign 432 838 1123 132 10 7941.971164148438 7941.9762403540035 7898 gi|16767362|ref|NP_462977.1| 50S ribosomal subunit protein L31 [Salmonella typhimurium LT2] 7941.9762403540035 1 70 .MKKGIHPNYVEITATCSCGNVIKTHSTVGHDLNLDVCGKCHPFFTGKQRVVDTGGRVERFNKRFSIPGSK. 0 53.0 38.0 5.108876822547934E-29 1.0217753645095868E-28 0.0
/home/xiaowen/c_project/proteomics_cpp/testcases/data/st_no_digestion.msalign 1074 1526 2040 121 7 7315.76836384375 7315.76336384375 1216 gi|16764006|ref|NP_459621.1| negative regulator [Salmonella typhimurium LT2] 7446.7773954443355 1 69 .(MSKI)[42.01]KGNVK(WFNE)[-173.02]SKGFGFITPEDGSKDVFVHFSAIQTNGFKTLAEGQRVEFEITNGAKGPSAANVTAL. 1 56.0 43.0 3.8349325206722205E-28 1.0328187603807545E-28 0.0
/home/xiaowen/c_project/proteomics_cpp/testcases/data/st_no_digestion.msalign 427 833 1116 132 7 7942.004466757812 7941.976240354004 7898 gi|16767362|ref|NP_462977.1| 50S ribosomal subunit protein L31 [Salmonella typhimurium LT2] 7941.9762403540035 1 70 .MKKGIHPNYVEITATCSCGNVIKTHSTVGHDLNLDVCGKCHPFFTGKQRVVDTGGRVERFNKRFSIPGSK. 0 60.0 46.0 5.532808115469477E-29 1.1065616230938954E-28 0.0
/home/xiaowen/c_project/proteomics_cpp/testcases/data/st_no_digestion.msalign 1629 2255 3012 148 9 9175.746757242187 9175.646864133301 7882 gi|16767354|ref|NP_462969.1| putative cytoplasmic protein [Salmonella typhimurium LT2] 9306.687360959473 2 79 M.SLEVFEKLEAKVQQAIDTITLLQMEIEELKEKNNSLTQEVQSAQHQREELERENNSLKEQQSGWQERLQALLGRMEEV. 0 68.0 49.0 1.2040307337438748E-28 1.2040307337438748E-28 0.0
/home/xiaowen/c_project/proteomics_cpp/testcases/data/st_no_digestion.msalign 1865 2663 3556 147 12 12291.567495562502 12291.470907407227 7986 gi|16767406|ref|NP_463021.1| 50S ribosomal subunit protein L7/L12 [Salmonella typhimurium LT2] 12291.470907407227 1 121 .MSITKDQIIEAVSAMSVMDVVELISAMEEKFGVSAAAAVAVAAGPAEAAEEKTEFDVILKAAGANKVAVIKAVRGATGLGLKEAKDLVESAPAALKEGVSKDDAEALKKSLEEAGAEVEVK. 0 58.0 51.0 6.253932362383997E-29 1.2507864724767994E-28 0.0
/home/xiaowen/c_project/proteomics_cpp/testcases/data/st_no_digestion.msalign 1323 1824 2438 153 10 9515.229294406254 9515.17277355713 8022 gi|16767424|ref|NP_463039.1| DNA-binding protein HU-alpha [Salmonella typhimurium LT2] 9515.17277355713 1 90 .MNKTQLIDVIADKAELSKTQAKAALESTLAAITESLKEGDAVQLVGFGTFKVNHRAERTGRNPQTGKEIKIAAANVPAFVSGKALKDAVK. 0 46.0 44.0 6.602234121304462E-29 1.3204468242608924E-28 0.0
/home/xiaowen/c_project/proteomics_cpp/testcases/data/st_no_digestion.msalign 904 1325 1772 132 9 8323.09307961328 8323.048940854493 8154 gi|16767490|ref|NP_463105.1| putative cytoplasmic protein [Salmonella typhimurium LT2] 8454.089437680665 2 70 M.MNKDEAGGNWKQFKGKMKEQWGKLTDDDMTVIEGKRDQLVGKIQERYGYQKDQAEKEVVDWETRNNYRW. 0 53.0 47.0 9.076678015843343E-29 1.8153356031686686E-28 0.0
/home/xiaowen/c_project/proteomics_cpp/testcases/data/st_no_digestion.msalign 1043 1475 1972 161 15 10534.649535781251 10534.58869 4296 gi|16765553|ref|NP_461168.1| 50S ribosomal subunit protein L25 [Salmonella typhimurium LT2] 10534.58869 1 94 .MFTINAEVRKEQGKGASRRLRAANKFPAIIYGGSEAPIAIELDHDQVMNMQAKAEFYSEVLTLVVDGKEVKVKAQAVQRHAYKPKLTHIDFVRA. 0 68.0 39.0 1.1812097052620523E-28 2.3624194105241046E-28 0.0
/home/xiaowen/c_project/proteomics_cpp/testcases/data/st_no_digestion.msalign 1631 2257 3015 142 7 9175.701128578125 9175.646864133301 7882 gi|16767354|ref|NP_462969.1| putative cytoplasmic protein [Salmonella typhimurium LT2] 9306.687360959473 2 79 M.SLEVFEKLEAKVQQAIDTITLLQMEIEELKEKNNSLTQEVQSAQHQREELERENNSLKEQQSGWQERLQALLGRMEEV. 0 71.0 52.0 2.5038167324455508E-28 2.5038167324455508E-28 0.0
/home/xiaowen/c_project/proteomics_cpp/testcases/data/st_no_digestion.msalign 470 877 1175 130 7 7825.946510359375 7825.976510359375 7898 gi|16767362|ref|NP_462977.1| 50S ribosomal subunit protein L31 [Salmonella typhimurium LT2] 7941.9762403540035 1 70 .MKKGIHPNYVEITATCSCGNVIKTHSTVGHDLNLDV(CGKC)[-116.00]HPFFTGKQRVVDTGGRVERFNKRFSIPGSK. 1 55.0 45.0 1.2199786546926656E-27 2.5749973693225956E-28 0.0
/home/xiaowen/c_project/proteomics_cpp/testcases/data/st_no_digestion.msalign 1077 1529 2044 121 7 7315.784599195313 7315.759599195313 1216 gi|16764006|ref|NP_459621.1| negative regulator [Salmonella typhimurium LT2] 7446.7773954443355 1 69 .(MSKI)[42.01]KGNVK(WF)[-173.03]NESKGFGFITPEDGSKDVFVHFSAIQTNGFKTLAEGQRVEFEITNGAKGPSAANVTAL. 1 54.0 41.0 1.0583177100967652E-27 2.762180213207782E-28 0.0
/home/xiaowen/c_project/proteomics_cpp/testcases/data/st_no_digestion.msalign 1634 2260 3019 152 8 9175.7580615625 9175.6430615625 7882 gi|16767354|ref|NP_462969.1| putative cytoplasmic protein [Salmonella typhimurium LT2] 9306.687360959473 2 79 M.(SLEVFE)[-.00]KLEAKVQQAIDTITLLQMEIEELKEKNNSLTQEVQSAQHQREELERENNSLKEQQSGWQERLQALLGRMEEV. 1 72.0 55.0 1.533519012040585E-27 2.922772949032758E-28 0.0
/home/xiaowen/c_project/proteomics_cpp/testcases/data/st_no_digestion.msalign 1625 2251 3007 152 8 9175.7346240625 9175.646864133301 7882 gi|16767354|ref|NP_462969.1| putative cytoplasmic protein [Salmonella typhimurium LT2] 9306.687360959473 2 79 M.SLEVFEKLEAKVQQAIDTITLLQMEIEELKEKNNSLTQEVQSAQHQREELERENNSLKEQQSGWQERLQALLGRMEEV. 0 70.0 54.0 2.9508513185513362E-28 2.9508513185513362E-28 0.0
/home/xiaowen/c_project/proteomics_cpp/testcases/data/st_no_digestion.msalign 1549 2141 2860 125 12 12939.6137456875 12939.526521878663 2772 gi|16764781|ref|NP_460396.1| putative glutaredoxin protein [Salmonella typhimurium LT2] 13070.567018704834 2 115 M.STTIEKIQRQIAENPILLYMKGSPKLPSCGFSAQAVQALSACGERFAYVDILQNPDIRAELPKYANWPTFPQLWVDGELVGGCDIVIEMYQRGELQQLIKETAAKYKTQEPDAE. 0 66.0 45.0 3.6698658625353814E-28 3.6698658625353814E-28 0.0
/home/xiaowen/c_project/proteomics_cpp/testcases/data/st_no_digestion.msalign 1034 1466 1960 171 14 10534.648144789066 10534.58869 4296 gi|16765553|ref|NP_461168.1| 50S ribosomal subunit protein L25 [Salmonella typhimurium LT2] 10534.58869 1 94 .MFTINAEVRKEQGKGASRRLRAANKFPAIIYGGSEAPIAIELDHDQVMNMQAKAEFYSEVLTLVVDGKEVKVKAQAVQRHAYKPKLTHIDFVRA. 0 64.0 41.0 1.9232008896675272E-28 3.8464017793350544E-28 0.0
/home/xiaowen/c_project/proteomics_cpp/testcases/data/st_no_digestion.msalign 932 1355 1812 152 8 9169.74146 9169.690111356202 7154 gi|16766987|ref|NP_462602.1| glutaredoxin 3 [Salmonella typhimurium LT2] 9300.730608182374 2 83 M.ANIEIYTKATCPFCHRAKALLNSKGVSFQEIAIDGDAVKREEMIKRSGRTTVPQIFIDAQHIGGCDDLYALDARGGLDPLLR. 0 53.0 46.0 4.283357645149177E-28 4.283357645149177E-28 0.0
/home/xiaowen/c_project/proteomics_cpp/testcases/data/st_no_digestion.msalign 751 1167 1562 171 15 10278.693796234375 10278.658636289065 6632 gi|16766725|ref|NP_462340.1| 30S ribosomal subunit protein S19 [Salmonella typhimurium LT2] 10409.699133115235 2 92 M.PRSLKKGPFIDLHLLKKVEKAVESGDKKPLRTWSRRSTIFPNMIGLTIAVHNGRQHVPVFVSDEMVGHKLGEFAPTRTYRGHAADKKAKKK. 0 65.0 43.0 4.657851779753478E-28 4.657851779753478E-28 0.0
/home/xiaowen/c_project/proteomics_cpp/testcases/data/st_no_digestion.msalign 1848 2635 3519 202 11 12160.525345085942 12160.430410581057 7986 gi|16767406|ref|NP_463021.1| 50S ribosomal subunit protein L7/L12 [Salmonella typhimurium LT2] 12291.470907407227 2 121 M.SITKDQIIEAVSAMSVMDVVELISAMEEKFGVSAAAAVAVAAGPAEAAEEKTEFDVILKAAGANKVAVIKAVRGATGLGLKEAKDLVESAPAALKEGVSKDDAEALKKSLEEAGAEVEVK. 0 77.0 57.0 4.92673439065866E-28 4.92673439065866E-28 0.0
/home/xiaowen/c_project/proteomics_cpp/testcases/data/st_no_digestion.msalign 413 819 1098 132 11 7941.989156703124 7941.9762403540035 7898 gi|16767362|ref|NP_462977.1| 50S ribosomal subunit protein L31 [Salmonella typhimurium LT2] 7941.9762403540035 1 70 .MKKGIHPNYVEITATCSCGNVIKTHSTVGHDLNLDVCGKCHPFFTGKQRVVDTGGRVERFNKRFSIPGSK. 0 55.0 37.0 2.617980868764243E-28 5.235961737528486E-28 0.0
/home/xiaowen/c_project/proteomics_cpp/testcases/data/st_no_digestion.msalign 1330 1831 2447 158 13 9515.20099667969 9515.172773557128 8022 gi|16767424|ref|NP_463039.1| DNA-binding protein HU-alpha [Salmonella typhimurium LT2] 9515.17277355713 1 90 .MNKTQLIDVIADKAELSKTQAKAALESTLAAITESLKEGDAVQLVGFGTFKVNHRAERTGRNPQTGKEIKIAAANVPAFVSGKALKDAVK. 0 68.0 46.0 2.959265623579426E-28 5.918531247158852E-28 0.0
/home/xiaowen/c_project/proteomics_cpp/testcases/data/st_no_digestion.msalign 1898 2745 3666 203 15 12202.567032867188 12202.440977292481 7986 gi|16767406|ref|NP_463021.1| 50S ribosomal subunit protein L7/L12 [Salmonella typhimurium LT2] 12291.470907407227 2 121 M.(S)[42.01]ITKDQIIEAVSAMSVMDVVELISAMEEKFGVSAAAAVAVAAGPAEAAEEKTEFDVILKAAGANKVAVIKAVRGATGLGLKEAKDLVESAPAALKEGVSKDDAEALKKSLEEAGAEVEVK. 0 66.0 48.0 6.865946096139058E-28 6.865946096139058E-28 0.0
/home/xiaowen/c_project/proteomics_cpp/testcases/data/st_no_digestion.msalign 1320 1821 2434 158 12 9515.207906468753 9515.17277355713 8022 gi|16767424|ref|NP_463039.1| DNA-binding protein HU-alpha [Salmonella typhimurium LT2] 9515.17277355713 1 90 .MNKTQLIDVIADKAELSKTQAKAALESTLAAITESLKEGDAVQLVGFGTFKVNHRAERTGRNPQTGKEIKIAAANVPAFVSGKALKDAVK. 0 62.0 46.0 3.9608557240831755E-28 7.921711448166351E-28 0.0
/home/xiaowen/c_project/proteomics_cpp/testcases/data/st_no_digestion.msalign 1418 1960 2619 151 7 9113.797470054687 9113.737188535157 4692 gi|16765751|ref|NP_461366.1| phosphohistidinoprotein-hexose phosphotransferase [Salmonella typhimurium LT2] 9113.737188535157 1 85 .MFQQEVTITAPNGLHTRPAAQFVKEAKGFTSEITVTSNGKSASAKSLFKLQTLGLTQGTVVTISAEGEDEQKAVEHLVKLMAELE. 0 47.0 46.0 4.611938203096605E-28 9.22387640619321E-28 0.0
/home/xiaowen/c_project/proteomics_cpp/testcases/data/st_no_digestion.msalign 899 1320 1766 125 10 8323.106738671875 8323.048940854493 8154 gi|16767490|ref|NP_463105.1| putative cytoplasmic protein [Salmonella typhimurium LT2] 8454.089437680665 2 70 M.MNKDEAGGNWKQFKGKMKEQWGKLTDDDMTVIEGKRDQLVGKIQERYGYQKDQAEKEVVDWETRNNYRW. 0 50.0 43.0 4.97179947519002E-28 9.94359895038004E-28 0.0
/home/xiaowen/c_project/proteomics_cpp/testcases/data/st_no_digestion.msalign 1733 2390 3192 140 7 11781.161828890625 11781.161828890625 7558 gi|16767191|ref|NP_462806.1| thioredoxin 1 [Salmonella typhimurium LT2] 11913.153913693848 2 109 M.SDKIIHLTDDSFDTDVLKADGAILVDFWAEWCGPCKMIA(PILD)[-.95]EIADEYQGKLTVAKLNIDQNPGTAPKYGIRGIPTLLLFKNGEVAATKVGALSKGQLKEFLDANLA. 1 54.0 52.0 9.268720584644706E-27 1.0582643012549651E-27 0.0
/home/xiaowen/c_project/proteomics_cpp/testcases/data/st_no_digestion.msalign 1316 1817 2428 158 13 9515.280342382815 9515.172773557128 8022 gi|16767424|ref|NP_463039.1| DNA-binding protein HU-alpha [Salmonella typhimurium LT2] 9515.17277355713 1 90 .MNKTQLIDVIADKAELSKTQAKAALESTLAAITESLKEGDAVQLVGFGTFKVNHRAERTGRNPQTGKEIKIAAANVPAFVSGKALKDAVK. 0 65.0 45.0 5.630687865599487E-28 1.1261375731198974E-27 0.0
/home/xiaowen/c_project/proteomics_cpp/testcases/data/st_no_digestion.msalign 1554 2146 2867 153 12 9234.083186609374 9234.010030942383 870 gi|16763832|ref|NP_459447.1| DNA-binding protein HU-beta [Salmonella typhimurium LT2] 9234.010030942383 1 90 .MNKSQLIEKIAAGADISKAAAGRALDAIIASVTESLKEGDDVALVGFGTFAVKERAARTGRNPQTGKEITIAAAKVPSFRAGKALKDAVN. 0 61.0 49.0 7.270948926786904E-28 1.4541897853573808E-27 0.0
/home/xiaowen/c_project/proteomics_cpp/testcases/data/st_no_digestion.msalign 1627 2253 3010 146 8 9175.7424365625 9175.646864133301 7882 gi|16767354|ref|NP_462969.1| putative cytoplasmic protein [Salmonella typhimurium LT2] 9306.687360959473 2 79 M.SLEVFEKLEAKVQQAIDTITLLQMEIEELKEKNNSLTQEVQSAQHQREELERENNSLKEQQSGWQERLQALLGRMEEV. 0 65.0 50.0 1.4772343676759617E-27 1.4772343676759617E-27 0.0
/home/xiaowen/c_project/proteomics_cpp/testcases/data/st_no_digestion.msalign 1417 1959 2618 151 7 9113.797470054687 9113.737188535157 4692 gi|16765751|ref|NP_461366.1| phosphohistidinoprotein-hexose phosphotransferase [Salmonella typhimurium LT2] 9113.737188535157 1 85 .MFQQEVTITAPNGLHTRPAAQFVKEAKGFTSEITVTSNGKSASAKSLFKLQTLGLTQGTVVTISAEGEDEQKAVEHLVKLMAELE. 0 47.0 46.0 7.500606689457522E-28 1.5001213378915043E-27 0.0
/home/xiaowen/c_project/proteomics_cpp/testcases/data/st_no_digestion.msalign 931 1354 1811 152 9 9169.73888370703 9169.690111356202 7154 gi|16766987|ref|NP_462602.1| glutaredoxin 3 [Salmonella typhimurium LT2] 9300.730608182374 2 83 M.ANIEIYTKATCPFCHRAKALLNSKGVSFQEIAIDGDAVKREEMIKRSGRTTVPQIFIDAQHIGGCDDLYALDARGGLDPLLR. 0 49.0 42.0 1.6717678704807497E-27 1.6717678704807497E-27 0.0
/home/xiaowen/c_project/proteomics_cpp/testcases/data/st_no_digestion.msalign 448 855 1146 134 10 8094.008277929687 8094.008277929687 7898 gi|16767362|ref|NP_462977.1| 50S ribosomal subunit protein L31 [Salmonella typhimurium LT2] 7941.9762403540035 1 70 .MKKGIHPNYVEITATCSCGNV(I)[152.03]KTHSTVGHDLNLDVCGKCHPFFTGKQRVVDTGGRVERFNKRFSIPGSK. 1 53.0 41.0 7.146510053579203E-27 1.7761330298935912E-27 0.0
/home/xiaowen/c_project/proteomics_cpp/testcases/data/st_no_digestion.msalign 1073 1525 2039 121 7 7315.76836384375 7315.736898618164 1216 gi|16764006|ref|NP_459621.1| negative regulator [Salmonella typhimurium LT2] 7446.7773954443355 2 69 M.SKIKGNVKWFNESKGFGFITPEDGSKDVFVHFSAIQTNGFKTLAEGQRVEFEITNGAKGPSAANVTAL. 0 56.0 41.0 1.3432447354556003E-27 2.6864894709112006E-27 0.0
/home/xiaowen/c_project/proteomics_cpp/testcases/data/st_no_digestion.msalign 1027 1459 1951 121 7 7266.764090382812 7266.744090382811 3554 gi|16765178|ref|NP_460793.1| cold shock protein [Salmonella typhimurium LT2] 7397.761007504882 1 69 .MAKIKGQV(KW)[-131.02]FNESKGFGFITPADGSKDVFVHFSAIQGNGFKTLAEGQNVEFEIQDGQKGPAAVNVTAI. 1 76.0 49.0 1.212744773138994E-26 3.0425472575031285E-27 0.0
/home/xiaowen/c_project/proteomics_cpp/testcases/data/st_no_digestion.msalign 1025 1457 1948 121 8 7266.77671184375 7266.74671184375 3554 gi|16765178|ref|NP_460793.1| cold shock protein [Salmonella typhimurium LT2] 7397.761007504882 1 69 .MAKIKGQV(KW)[-131.01]FNESKGFGFITPADGSKDVFVHFSAIQGNGFKTLAEGQNVEFEIQDGQKGPAAVNVTAI. 1 76.0 43.0 1.3803784288470324E-26 3.463108393478653E-27 0.0
/home/xiaowen/c_project/proteomics_cpp/testcases/data/st_no_digestion.msalign 1866 2664 3558 169 11 12291.574649492186 12291.470907407227 7986 gi|16767406|ref|NP_463021.1| 50S ribosomal subunit protein L7/L12 [Salmonella typhimurium LT2] 12291.470907407227 1 121 .MSITKDQIIEAVSAMSVMDVVELISAMEEKFGVSAAAAVAVAAGPAEAAEEKTEFDVILKAAGANKVAVIKAVRGATGLGLKEAKDLVESAPAALKEGVSKDDAEALKKSLEEAGAEVEVK. 0 76.0 53.0 1.8568929678557803E-27 3.713785935711561E-27 0.0
/home/xiaowen/c_project/proteomics_cpp/testcases/data/st_no_digestion.msalign 1080 1532 2048 121 7 7315.788017164063 7315.753017164064 1216 gi|16764006|ref|NP_459621.1| negative regulator [Salmonella typhimurium LT2] 7446.7773954443355 1 69 .MSKIKGN(VKWF)[-131.02]NESKGFGFITPEDGSKDVFVHFSAIQTNGFKTLAEGQRVEFEITNGAKGPSAANVTAL. 1 53.0 41.0 1.5119440425036982E-26 3.9461325061821495E-27 0.0
/home/xiaowen/c_project/proteomics_cpp/testcases/data/st_no_digestion.msalign 1741 2404 3211 196 11 11782.21780789844 11782.113416867676 7558 gi|16767191|ref|NP_462806.1| thioredoxin 1 [Salmonella typhimurium LT2] 11913.153913693848 2 109 M.SDKIIHLTDDSFDTDVLKADGAILVDFWAEWCGPCKMIAPILDEIADEYQGKLTVAKLNIDQNPGTAPKYGIRGIPTLLLFKNGEVAATKVGALSKGQLKEFLDANLA. 0 65.0 47.0 3.972567564502269E-27 3.972567564502269E-27 0.0
/home/xiaowen/c_project/proteomics_cpp/testcases/data/st_no_digestion.msalign 1626 2252 3008 145 8 9175.7346240625 9175.646864133301 7882 gi|16767354|ref|NP_462969.1| putative cytoplasmic protein [Salmonella typhimurium LT2] 9306.687360959473 2 79 M.SLEVFEKLEAKVQQAIDTITLLQMEIEELKEKNNSLTQEVQSAQHQREELERENNSLKEQQSGWQERLQALLGRMEEV. 0 65.0 49.0 5.3909874355363974E-27 5.3909874355363974E-27 0.0
/home/xiaowen/c_project/proteomics_cpp/testcases/data/st_no_digestion.msalign 1735 2392 3195 196 12 11782.192343421877 11782.113416867676 7558 gi|16767191|ref|NP_462806.1| thioredoxin 1 [Salmonella typhimurium LT2] 11913.153913693848 2 109 M.SDKIIHLTDDSFDTDVLKADGAILVDFWAEWCGPCKMIAPILDEIADEYQGKLTVAKLNIDQNPGTAPKYGIRGIPTLLLFKNGEVAATKVGALSKGQLKEFLDANLA. 0 67.0 48.0 5.507085392997355E-27 5.507085392997355E-27 0.0
/home/xiaowen/c_project/proteomics_cpp/testcases/data/st_no_digestion.msalign 1039 1471 1967 163 16 10534.659349625 10534.58869 4296 gi|16765553|ref|NP_461168.1| 50S ribosomal subunit protein L25 [Salmonella typhimurium LT2] 10534.58869 1 94 .MFTINAEVRKEQGKGASRRLRAANKFPAIIYGGSEAPIAIELDHDQVMNMQAKAEFYSEVLTLVVDGKEVKVKAQAVQRHAYKPKLTHIDFVRA. 0 66.0 41.0 2.907387085954623E-27 5.814774171909246E-27 0.0
/home/xiaowen/c_project/proteomics_cpp/testcases/data/st_no_digestion.msalign 761 1177 1575 84 12 10278.689257046875 10278.658636289063 6632 gi|16766725|ref|NP_462340.1| 30S ribosomal subunit protein S19 [Salmonella typhimurium LT2] 10409.699133115235 2 92 M.PRSLKKGPFIDLHLLKKVEKAVESGDKKPLRTWSRRSTIFPNMIGLTIAVHNGRQHVPVFVSDEMVGHKLGEFAPTRTYRGHAADKKAKKK. 0 36.0 29.0 6.035937220837464E-27 6.035937220837464E-27 0.0
/home/xiaowen/c_project/proteomics_cpp/testcases/data/st_no_digestion.msalign 934 1357 1815 151 9 9169.749320718749 9169.690111356202 7154 gi|16766987|ref|NP_462602.1| glutaredoxin 3 [Salmonella typhimurium LT2] 9300.730608182374 2 83 M.ANIEIYTKATCPFCHRAKALLNSKGVSFQEIAIDGDAVKREEMIKRSGRTTVPQIFIDAQHIGGCDDLYALDARGGLDPLLR. 0 54.0 42.0 6.310212894067941E-27 6.310212894067941E-27 0.0
/home/xiaowen/c_project/proteomics_cpp/testcases/data/st_no_digestion.msalign 1867 2665 3559 138 12 12291.574819781252 12291.470907407227 7986 gi|16767406|ref|NP_463021.1| 50S ribosomal subunit protein L7/L12 [Salmonella typhimurium LT2] 12291.470907407227 1 121 .MSITKDQIIEAVSAMSVMDVVELISAMEEKFGVSAAAAVAVAAGPAEAAEEKTEFDVILKAAGANKVAVIKAVRGATGLGLKEAKDLVESAPAALKEGVSKDDAEALKKSLEEAGAEVEVK. 0 51.0 46.0 4.0940730346895784E-27 8.188146069379157E-27 0.0
/home/xiaowen/c_project/proteomics_cpp/testcases/data/st_no_digestion.msalign 1874 2678 3576 201 11 12291.558536210936 12291.470907407227 7986 gi|16767406|ref|NP_463021.1| 50S ribosomal subunit protein L7/L12 [Salmonella typhimurium LT2] 12291.470907407227 1 121 .MSITKDQIIEAVSAMSVMDVVELISAMEEKFGVSAAAAVAVAAGPAEAAEEKTEFDVILKAAGANKVAVIKAVRGATGLGLKEAKDLVESAPAALKEGVSKDDAEALKKSLEEAGAEVEVK. 0 76.0 55.0 4.23777059261885E-27 8.4755411852377E-27 0.0
/home/xiaowen/c_project/proteomics_cpp/testcases/data/st_no_digestion.msalign 1028 1460 1952 121 8 7266.7664579375 7266.746457937499 3554 gi|16765178|ref|NP_460793.1| cold shock protein [Salmonella typhimurium LT2] 7397.761007504882 1 69 .MAKIKGQV(KW)[-131.01]FNESKGFGFITPADGSKDVFVHFSAIQGNGFKTLAEGQNVEFEIQDGQKGPAAVNVTAI. 1 74.0 44.0 4.1543290470299705E-26 1.0254322187617379E-26 0.0
/home/xiaowen/c_project/proteomics_cpp/testcases/data/st_no_digestion.msalign 414 820 1099 132 12 7941.993599453127 7941.976240354003 7898 gi|16767362|ref|NP_462977.1| 50S ribosomal subunit protein L31 [Salmonella typhimurium LT2] 7941.9762403540035 1 70 .MKKGIHPNYVEITATCSCGNVIKTHSTVGHDLNLDVCGKCHPFFTGKQRVVDTGGRVERFNKRFSIPGSK. 0 52.0 37.0 6.482890831173319E-27 1.2965781662346638E-26 0.0
/home/xiaowen/c_project/proteomics_cpp/testcases/data/st_no_digestion.msalign 1605 2223 2970 104 9 9306.7312263125 9306.687360959471 7882 gi|16767354|ref|NP_462969.1| putative cytoplasmic protein [Salmonella typhimurium LT2] 9306.687360959473 1 79 .MSLEVFEKLEAKVQQAIDTITLLQMEIEELKEKNNSLTQEVQSAQHQREELERENNSLKEQQSGWQERLQALLGRMEEV. 0 58.0 43.0 6.793388850899151E-27 1.3586777701798302E-26 0.0
/home/xiaowen/c_project/proteomics_cpp/testcases/data/st_no_digestion.msalign 655 1067 1428 186 14 11177.309795359375 11177.309795359375 6618 gi|16766718|ref|NP_462333.1| 50S ribosomal subunit protein L24 [Salmonella typhimurium LT2] 11309.309614377442 2 104 M.AAKIRRDDEVIVLTGKD(KGKRGKVK)[-.96]NVLSSGKVIVEGINLVKKHQKPVPALNQPGGIVEKEAAIQVSNVAIFNAATGKADRVGFRFEDGKKVRFFKSNSETIK. 1 70.0 44.0 1.1722808793644021E-25 1.376239057146027E-26 0.0
/home/xiaowen/c_project/proteomics_cpp/testcases/data/st_no_digestion.msalign 446 853 1143 134 10 8093.988136328125 8093.988136328125 7898 gi|16767362|ref|NP_462977.1| 50S ribosomal subunit protein L31 [Salmonella typhimurium LT2] 7941.9762403540035 1 70 .MKKGIHPNYVEITATCS(C)[152.01]GNVIKTHSTVGHDLNLDVCGKCHPFFTGKQRVVDTGGRVERFNKRFSIPGSK. 1 53.0 40.0 7.624092099402214E-26 1.9226923294667896E-26 0.0
/home/xiaowen/c_project/proteomics_cpp/testcases/data/st_no_digestion.msalign 1868 2666 3560 59 8 12292.5516776875 12292.521677687499 7986 gi|16767406|ref|NP_463021.1| 50S ribosomal subunit protein L7/L12 [Salmonella typhimurium LT2] 12291.470907407227 1 121 .MSITKDQIIEAVSAMSVMDVVELISAMEEKF(G)[1.05]VSAAAAVAVAAGPAEAAEEKTEFDVILKAAGANKVAVIKAVRGATGLGLKEAKDLVESAPAALKEGVSKDDAEALKKSLEEAGAEVEVK. 1 33.0 32.0 7.481552135694806E-26 2.4055324251152196E-26 0.0
/home/xiaowen/c_project/proteomics_cpp/testcases/data/st_no_digestion.msalign 1864 2662 3555 77 8 12290.511638625 12290.511638625 7986 gi|16767406|ref|NP_463021.1| 50S ribosomal subunit protein L7/L12 [Salmonella typhimurium LT2] 12291.470907407227 1 121 .MSITKDQIIEAVSAMSVMDVVELISAMEEKFGV(SAAAA)[-.96]VAVAAGPAEAAEEKTEFDVILKAAGANKVAVIKAVRGATGLGLKEAKDLVESAPAALKEGVSKDDAEALKKSLEEAGAEVEVK. 1 35.0 32.0 8.552410256025217E-26 2.454227056849584E-26 0.0
/home/xiaowen/c_project/proteomics_cpp/testcases/data/st_no_digestion.msalign 443 850 1139 134 11 8094.011866187499 8094.011866187499 7898 gi|16767362|ref|NP_462977.1| 50S ribosomal subunit protein L31 [Salmonella typhimurium LT2] 7941.9762403540035 1 70 .MKKGIHPNYVEITAT(C)[152.04]SCGNVIKTHSTVGHDLNLDVCGKCHPFFTGKQRVVDTGGRVERFNKRFSIPGSK. 1 49.0 36.0 1.6106202957830691E-25 4.0028991556858943E-26 0.0
/home/xiaowen/c_project/proteomics_cpp/testcases/data/st_no_digestion.msalign 1776 2477 3308 91 7 8095.216497296875 8095.153410153809 4302 gi|16765556|ref|NP_461171.1| putative cytoplasmic protein [Salmonella typhimurium LT2] 8226.193906979981 2 75 M.PQLSRYSDEHVEQLLSELLSVLEKHKAPTDLSLMVLGNMVTNLINTSVAPAQRQAIANSFARALQSSISEDNAH. 0 42.0 39.0 7.353795559019982E-26 7.353795559019982E-26 0.0
/home/xiaowen/c_project/proteomics_cpp/testcases/data/st_no_digestion.msalign 1785 2486 3320 109 6 8095.172992046876 8095.153410153809 4302 gi|16765556|ref|NP_461171.1| putative cytoplasmic protein [Salmonella typhimurium LT2] 8226.193906979981 2 75 M.PQLSRYSDEHVEQLLSELLSVLEKHKAPTDLSLMVLGNMVTNLINTSVAPAQRQAIANSFARALQSSISEDNAH. 0 37.0 35.0 7.555536084438093E-26 7.555536084438093E-26 0.0
/home/xiaowen/c_project/proteomics_cpp/testcases/data/st_no_digestion.msalign 1889 2733 3650 203 15 12201.5398111875 12201.5248111875 7986 gi|16767406|ref|NP_463021.1| 50S ribosomal subunit protein L7/L12 [Salmonella typhimurium LT2] 12291.470907407227 2 121 M.(SITKDQI)[42.01]IEAVSAMSVMDVVELISAMEEKFGVSAAAAVAVAAGPAEAAEEKTEFDVILKAAGANKVAVIKAVRGAT(GLGLKEAKDLVE)[-.92]SAPAALKEGVSKDDAEALKKSLEEAGAEVEVK. 1 66.0 46.0 3.170792587782325E-25 8.761334734427728E-26 0.0
/home/xiaowen/c_project/proteomics_cpp/testcases/data/st_no_digestion.msalign 422 828 1110 132 9 7942.0443581171885 7941.9762403540035 7898 gi|16767362|ref|NP_462977.1| 50S ribosomal subunit protein L31 [Salmonella typhimurium LT2] 7941.9762403540035 1 70 .MKKGIHPNYVEITATCSCGNVIKTHSTVGHDLNLDVCGKCHPFFTGKQRVVDTGGRVERFNKRFSIPGSK. 0 58.0 42.0 7.147288665888459E-26 1.4294577331776919E-25 0.0
/home/xiaowen/c_project/proteomics_cpp/testcases/data/st_no_digestion.msalign 929 1352 1808 152 9 9169.739982339843 9169.690111356202 7154 gi|16766987|ref|NP_462602.1| glutaredoxin 3 [Salmonella typhimurium LT2] 9300.730608182374 2 83 M.ANIEIYTKATCPFCHRAKALLNSKGVSFQEIAIDGDAVKREEMIKRSGRTTVPQIFIDAQHIGGCDDLYALDARGGLDPLLR. 0 52.0 43.0 1.5455059883542058E-25 1.5455059883542058E-25 0.0
/home/xiaowen/c_project/proteomics_cpp/testcases/data/st_no_digestion.msalign 1030 1462 1955 121 6 7266.7536661875 7266.720510678711 3554 gi|16765178|ref|NP_460793.1| cold shock protein [Salmonella typhimurium LT2] 7397.761007504882 2 69 M.AKIKGQVKWFNESKGFGFITPADGSKDVFVHFSAIQGNGFKTLAEGQNVEFEIQDGQKGPAAVNVTAI. 0 69.0 42.0 1.5988667663424557E-25 1.5988667663424557E-25 0.0
/home/xiaowen/c_project/proteomics_cpp/testcases/data/st_no_digestion.msalign 1638 2264 3024 150 7 9175.728472328125 9175.646864133301 7882 gi|16767354|ref|NP_462969.1| putative cytoplasmic protein [Salmonella typhimurium LT2] 9306.687360959473 2 79 M.SLEVFEKLEAKVQQAIDTITLLQMEIEELKEKNNSLTQEVQSAQHQREELERENNSLKEQQSGWQERLQALLGRMEEV. 0 66.0 48.0 1.7059329838135666E-25 1.7059329838135666E-25 0.0
/home/xiaowen/c_project/proteomics_cpp/testcases/data/st_no_digestion.msalign 1539 2131 2847 153 12 9234.080989343749 9234.010030942383 870 gi|16763832|ref|NP_459447.1| DNA-binding protein HU-beta [Salmonella typhimurium LT2] 9234.010030942383 1 90 .MNKSQLIEKIAAGADISKAAAGRALDAIIASVTESLKEGDDVALVGFGTFAVKERAARTGRNPQTGKEITIAAAKVPSFRAGKALKDAVN. 0 57.0 46.0 9.947952681628847E-26 1.9895905363257693E-25 0.0
/home/xiaowen/c_project/proteomics_cpp/testcases/data/st_no_digestion.msalign 1040 1472 1968 166 13 10534.639917859378 10534.588689999999 4296 gi|16765553|ref|NP_461168.1| 50S ribosomal subunit protein L25 [Salmonella typhimurium LT2] 10534.58869 1 94 .MFTINAEVRKEQGKGASRRLRAANKFPAIIYGGSEAPIAIELDHDQVMNMQAKAEFYSEVLTLVVDGKEVKVKAQAVQRHAYKPKLTHIDFVRA. 0 61.0 41.0 1.081911920715441E-25 2.163823841430882E-25 0.0
/home/xiaowen/c_project/proteomics_cpp/testcases/data/st_no_digestion.msalign 1632 2258 3016 152 7 9175.701128578125 9175.646864133301 7882 gi|16767354|ref|NP_462969.1| putative cytoplasmic protein [Salmonella typhimurium LT2] 9306.687360959473 2 79 M.SLEVFEKLEAKVQQAIDTITLLQMEIEELKEKNNSLTQEVQSAQHQREELERENNSLKEQQSGWQERLQALLGRMEEV. 0 64.0 47.0 2.796257693573605E-25 2.796257693573605E-25 0.0
/home/xiaowen/c_project/proteomics_cpp/testcases/data/st_no_digestion.msalign 472 879 1178 130 8 7825.95363865625 7825.95363865625 7898 gi|16767362|ref|NP_462977.1| 50S ribosomal subunit protein L31 [Salmonella typhimurium LT2] 7941.9762403540035 1 70 .MKKGIHPNYVEITATCSCGNVIKTHSTVGHDLNLDV(CGKC)[-116.02]HPFFTGKQRVVDTGGRVERFNKRFSIPGSK. 1 58.0 43.0 1.4816741050094867E-24 3.127355472915207E-25 0.0
/home/xiaowen/c_project/proteomics_cpp/testcases/data/st_no_digestion.msalign 1787 2488 3323 93 6 8095.209613140626 8095.153410153809 4302 gi|16765556|ref|NP_461171.1| putative cytoplasmic protein [Salmonella typhimurium LT2] 8226.193906979981 2 75 M.PQLSRYSDEHVEQLLSELLSVLEKHKAPTDLSLMVLGNMVTNLINTSVAPAQRQAIANSFARALQSSISEDNAH. 0 34.0 32.0 3.5395334870518794E-25 3.5395334870518794E-25 0.0
/home/xiaowen/c_project/proteomics_cpp/testcases/data/st_no_digestion.msalign 830 1248 1670 148 13 10406.176076671874 10406.171076671875 1966 gi|16764378|ref|NP_459993.1| hypothetical protein STM1018 [Phage Gifsy-2] 11265.5324689917 8 96 L.MYQRMIFEEGKEPRLYSSQHDSKFIPISNN(NG)[34.03]KVQKVPVMELKDTRGDVFYAYNYAYSGKKPSNDEIYKAIDELKPIGEKFEMSKTISD. 1 55.0 41.0 1.6200546145296735E-26 3.859542959331136E-25 0.0
/home/xiaowen/c_project/proteomics_cpp/testcases/data/st_no_digestion.msalign 1635 2261 3020 148 7 9175.75410709375 9175.646864133301 7882 gi|16767354|ref|NP_462969.1| putative cytoplasmic protein [Salmonella typhimurium LT2] 9306.687360959473 2 79 M.SLEVFEKLEAKVQQAIDTITLLQMEIEELKEKNNSLTQEVQSAQHQREELERENNSLKEQQSGWQERLQALLGRMEEV. 0 63.0 46.0 4.4945816809855265E-25 4.4945816809855265E-25 0.0
/home/xiaowen/c_project/proteomics_cpp/testcases/data/st_no_digestion.msalign 1032 1464 1958 163 15 10534.644042617188 10534.58869 4296 gi|16765553|ref|NP_461168.1| 50S ribosomal subunit protein L25 [Salmonella typhimurium LT2] 10534.58869 1 94 .MFTINAEVRKEQGKGASRRLRAANKFPAIIYGGSEAPIAIELDHDQVMNMQAKAEFYSEVLTLVVDGKEVKVKAQAVQRHAYKPKLTHIDFVRA. 0 70.0 38.0 3.4054725520805564E-25 6.810945104161113E-25 0.0
/home/xiaowen/c_project/proteomics_cpp/testcases/data/st_no_digestion.msalign 533 940 1259 117 9 7079.469726191406 7079.469726191406 748 gi|16763769|ref|NP_459384.1| putative cytoplasmic protein [Salmonella typhimurium LT2] 7222.519148068847 2 63 M.PTRPPYPREAYIVTIEKGTPGQTVTWYQLRADHPKPDSL(ISE)[-12.01]HPTAEEAMDAKNRYEDPDKS. 1 33.0 30.0 1.1996938437441798E-23 7.108433654045165E-25 0.0
/home/xiaowen/c_project/proteomics_cpp/testcases/data/st_no_digestion.msalign 532 939 1258 113 9 7079.469726191406 7079.469726191406 748 gi|16763769|ref|NP_459384.1| putative cytoplasmic protein [Salmonella typhimurium LT2] 7222.519148068847 2 63 M.PTRPPYPREAYIVTIEKGTPGQTVTWYQLRADHPKPDSL(ISE)[-12.01]HPTAEEAMDAKNRYEDPDKS. 1 36.0 30.0 1.2214123175151144E-23 7.237120094067215E-25 0.0
/home/xiaowen/c_project/proteomics_cpp/testcases/data/st_no_digestion.msalign 1208 1693 2263 70 9 9782.848435289061 9782.813444333497 4144 gi|16765477|ref|NP_461092.1| putative periplasmic protein [Salmonella typhimurium LT2] 11884.955469327393 20 104 A.APATTGIDQYELKSFIADFTHFKPGDTVPQMYRTDEYNIKQWKLRNLPAPDAGTHWTYMGGAYVLINDTDGKIIKAYDGEIFYHR. 0 35.0 31.0 2.668529780790852E-26 7.738736364293471E-25 0.0
/home/xiaowen/c_project/proteomics_cpp/testcases/data/st_no_digestion.msalign 1041 1473 1970 115 12 10534.639869640629 10534.58869 4296 gi|16765553|ref|NP_461168.1| 50S ribosomal subunit protein L25 [Salmonella typhimurium LT2] 10534.58869 1 94 .MFTINAEVRKEQGKGASRRLRAANKFPAIIYGGSEAPIAIELDHDQVMNMQAKAEFYSEVLTLVVDGKEVKVKAQAVQRHAYKPKLTHIDFVRA. 0 54.0 36.0 4.220466451249809E-25 8.440932902499617E-25 0.0
/home/xiaowen/c_project/proteomics_cpp/testcases/data/st_no_digestion.msalign 471 878 1176 128 7 7825.946510359375 7825.946510359375 7898 gi|16767362|ref|NP_462977.1| 50S ribosomal subunit protein L31 [Salmonella typhimurium LT2] 7941.9762403540035 1 70 .MKKGIHPNYVEITATCSCGNVIKTHSTVGHDLNLD(VCGKC)[-116.03]HPFFTGKQRVVDTGGRVERFNKRFSIPGSK. 1 56.0 44.0 5.835086263713799E-24 1.2316061204053274E-24 0.0
/home/xiaowen/c_project/proteomics_cpp/testcases/data/st_no_digestion.msalign 1847 2634 3518 202 11 12160.525345085942 12160.430410581057 7986 gi|16767406|ref|NP_463021.1| 50S ribosomal subunit protein L7/L12 [Salmonella typhimurium LT2] 12291.470907407227 2 121 M.SITKDQIIEAVSAMSVMDVVELISAMEEKFGVSAAAAVAVAAGPAEAAEEKTEFDVILKAAGANKVAVIKAVRGATGLGLKEAKDLVESAPAALKEGVSKDDAEALKKSLEEAGAEVEVK. 0 73.0 52.0 1.2563721667933563E-24 1.2563721667933563E-24 0.0
/home/xiaowen/c_project/proteomics_cpp/testcases/data/st_no_digestion.msalign 1538 2130 2846 153 12 9234.080989343749 9234.010030942383 870 gi|16763832|ref|NP_459447.1| DNA-binding protein HU-beta [Salmonella typhimurium LT2] 9234.010030942383 1 90 .MNKSQLIEKIAAGADISKAAAGRALDAIIASVTESLKEGDDVALVGFGTFAVKERAARTGRNPQTGKEITIAAAKVPSFRAGKALKDAVN. 0 53.0 46.0 7.7606987078923155E-25 1.5521397415784631E-24 0.0
/home/xiaowen/c_project/proteomics_cpp/testcases/data/st_no_digestion.msalign 1633 2259 3018 151 7 9175.75410709375 9175.646864133301 7882 gi|16767354|ref|NP_462969.1| putative cytoplasmic protein [Salmonella typhimurium LT2] 9306.687360959473 2 79 M.SLEVFEKLEAKVQQAIDTITLLQMEIEELKEKNNSLTQEVQSAQHQREELERENNSLKEQQSGWQERLQALLGRMEEV. 0 67.0 47.0 1.7016335709051118E-24 1.7016335709051118E-24 0.0
/home/xiaowen/c_project/proteomics_cpp/testcases/data/st_no_digestion.msalign 1960 3095 4132 100 8 10180.588413375 10180.52108593506 8330 gi|16767578|ref|NP_463193.1| chaperone Hsp10 [Salmonella typhimurium LT2] 10311.561582761231 2 97 M.SIRPLHDRVIVKRKEVESKSAGGIVLTGSAAGKSTRGEIIAVGKGRILDNGTVQPLDVKVGDIVIFNDGYGVKSEKIDNEEVLIMSESDILAIVEA. 0 47.0 37.0 1.8333636831058812E-24 1.8333636831058812E-24 0.0
/home/xiaowen/c_project/proteomics_cpp/testcases/data/st_no_digestion.msalign 1263 1752 2342 131 13 10099.413442535157 10099.348730283204 7232 gi|16767026|ref|NP_462641.1| RNA polymerase omega subunit [Salmonella typhimurium LT2] 10230.389227109375 2 91 M.ARVTVQDAVEKIGNRFDLVLVAARRARQMQVGGKDPLVPEENDKTTVIALREIEEGLINNQILDVRERQEQQEQEAAELQAVTAIAEGRR. 0 44.0 37.0 1.8693499103594308E-24 1.8693499103594308E-24 0.0
/home/xiaowen/c_project/proteomics_cpp/testcases/data/st_no_digestion.msalign 1145 1618 2163 182 13 12762.063170726562 12761.967558103028 6608 gi|16766713|ref|NP_462328.1| 50S ribosomal subunit protein L18 [Salmonella typhimurium LT2] 12761.967558103028 1 117 .MDKKSARIRRATRARRKLKELGATRLVVHRTPRHIYAQVIAPNGSEVLVAASTVEKAIAEQLKYTGNKDAAAAVGKAVAERALEKGIKDVSFDRSGFQYHGRVQALADAAREAGLQF. 0 46.0 37.0 9.912955341104489E-25 1.9825910682208978E-24 0.0
/home/xiaowen/c_project/proteomics_cpp/testcases/data/st_no_digestion.msalign 1012 1442 1928 135 8 8113.319817 8113.281858640137 1836 gi|16764314|ref|NP_459929.1| protein chain initiation factor IF-1 [Salmonella typhimurium LT2] 8244.32235546631 2 72 M.AKEDNIEMQGTVLETLPNTMFRVELENGHVVTAHISGKMRKNYIRILTGDKVTVELTPYDLSKGRIVFRSR. 0 51.0 39.0 1.0346059123218614E-24 2.069211824643723E-24 0.0
/home/xiaowen/c_project/proteomics_cpp/testcases/data/st_no_digestion.msalign 743 1159 1551 150 8 9518.3361315625 9518.289663510743 86 gi|16763433|ref|NP_459048.1| 30S ribosomal subunit protein S20 [Salmonella typhimurium LT2] 9649.330160336915 2 87 M.ANIKSAKKRAVQSEKARKHNASRRSMMRTFIKKVYAAIEAGDKAAALKAFNEMQPIVDRQAAKGLIHKNKAARHKANLTAQINKLA. 0 44.0 38.0 2.197818995569705E-24 2.197818995569705E-24 0.0
/home/xiaowen/c_project/proteomics_cpp/testcases/data/st_no_digestion.msalign 1560 2153 2876 120 10 12938.602174640626 12938.602174640626 2772 gi|16764781|ref|NP_460396.1| putative glutaredoxin protein [Salmonella typhimurium LT2] 13070.567018704834 2 115 M.STTIEKIQRQIAENPILLYMKGSPKLPSCGFSAQAVQALSACGERFAYVDILQNPDIRAELPKYAN(W)[-1.93]PTFPQLWVDGELV(GGC)[1.01]DIVIEMYQRGELQQLIKETAAKYKTQEPDAE. 2 49.0 40.0 4.8490578815480283E-26 2.3226193855271587E-24 0.0
/home/xiaowen/c_project/proteomics_cpp/testcases/data/st_no_digestion.msalign 1324 1825 2439 124 9 9514.221189546875 9514.221189546875 8022 gi|16767424|ref|NP_463039.1| DNA-binding protein HU-alpha [Salmonella typhimurium LT2] 9515.17277355713 1 90 .MNKTQLIDVIADKAELSKTQAKAALESTLAA(I)[-.95]TESLKEGDAVQLVGFGTFKVNHRAERTGRNPQTGKEIKIAAANVPAFVSGKALKDAVK. 1 44.0 42.0 1.8291264619382477E-23 2.563062356084541E-24 0.0
/home/xiaowen/c_project/proteomics_cpp/testcases/data/st_no_digestion.msalign 612 1021 1367 135 7 8528.073089750002 8528.029287534178 2900 gi|16764845|ref|NP_460460.1| putative outer membrane protein [Salmonella typhimurium LT2] 10682.22712536377 23 102 A.APGSCERVKSDIEQRIINNGVPADNFTLTIVPNDQADQPDSQVVGHCANDTHKILYTRTSSGNAPANTSPAQDGSSAEPQ. 0 52.0 37.0 2.713641491282769E-25 3.2563697895393228E-24 0.0
/home/xiaowen/c_project/proteomics_cpp/testcases/data/st_no_digestion.msalign 1619 2245 2999 149 9 9191.71594348828 9191.64594348828 7882 gi|16767354|ref|NP_462969.1| putative cytoplasmic protein [Salmonella typhimurium LT2] 9306.687360959473 2 79 M.SLEVFEKLEAKVQQAID(T)[16.00]ITLLQMEIEELKEKNNSLTQEVQSAQHQREELERENNSLKEQQSGWQERLQALLGRMEEV. 1 68.0 47.0 1.1706687955236053E-23 3.42313649675131E-24 0.0
/home/xiaowen/c_project/proteomics_cpp/testcases/data/st_no_digestion.msalign 93 472 635 184 10 11064.956792875002 11064.86583538574 1452 gi|16764124|ref|NP_459739.1| hypothetical protein STM0759 [Salmonella typhimurium LT2] 13436.224081235352 25 128 A.AESNAQSSNGQANSAANAGQVAPDARQNVAPNDVNNNDINTNGNTNSTMQHPDGSTMNHDGMTKDEEHKNTMCKDGRCPDINKKVETGNGVNNDVNTKTDGTTQ. 0 54.0 41.0 1.1968637919146145E-25 3.8299641341267665E-24 0.0
/home/xiaowen/c_project/proteomics_cpp/testcases/data/st_no_digestion.msalign 453 860 1152 131 11 8094.037378882812 8094.0223788828125 7898 gi|16767362|ref|NP_462977.1| 50S ribosomal subunit protein L31 [Salmonella typhimurium LT2] 7941.9762403540035 1 70 .MKKGIHPNYVEITATCS(C)[152.05]GNVIKTHSTVGHDLNLDVCGKCHPFFTGKQRVVDTGGRVERFNKRFSIPGSK. 1 49.0 35.0 1.7510837300591414E-23 4.351995068571472E-24 0.0
/home/xiaowen/c_project/proteomics_cpp/testcases/data/st_no_digestion.msalign 1016 1446 1934 135 8 8113.32030528125 8113.281858640137 1836 gi|16764314|ref|NP_459929.1| protein chain initiation factor IF-1 [Salmonella typhimurium LT2] 8244.32235546631 2 72 M.AKEDNIEMQGTVLETLPNTMFRVELENGHVVTAHISGKMRKNYIRILTGDKVTVELTPYDLSKGRIVFRSR. 0 48.0 37.0 3.047432903589056E-24 6.094865807178112E-24 0.0
/home/xiaowen/c_project/proteomics_cpp/testcases/data/st_no_digestion.msalign 1541 2133 2850 153 11 9234.09674923047 9234.010030942383 870 gi|16763832|ref|NP_459447.1| DNA-binding protein HU-beta [Salmonella typhimurium LT2] 9234.010030942383 1 90 .MNKSQLIEKIAAGADISKAAAGRALDAIIASVTESLKEGDDVALVGFGTFAVKERAARTGRNPQTGKEITIAAAKVPSFRAGKALKDAVN. 0 53.0 46.0 3.545353444102007E-24 7.090706888204014E-24 0.0
/home/xiaowen/c_project/proteomics_cpp/testcases/data/st_no_digestion.msalign 741 1157 1548 147 8 9518.352733125 9518.289663510743 86 gi|16763433|ref|NP_459048.1| 30S ribosomal subunit protein S20 [Salmonella typhimurium LT2] 9649.330160336915 2 87 M.ANIKSAKKRAVQSEKARKHNASRRSMMRTFIKKVYAAIEAGDKAAALKAFNEMQPIVDRQAAKGLIHKNKAARHKANLTAQINKLA. 0 48.0 39.0 7.844009028704343E-24 7.844009028704343E-24 0.0
/home/xiaowen/c_project/proteomics_cpp/testcases/data/st_no_digestion.msalign 1540 2132 2848 153 11 9234.077279015626 9234.010030942383 870 gi|16763832|ref|NP_459447.1| DNA-binding protein HU-beta [Salmonella typhimurium LT2] 9234.010030942383 1 90 .MNKSQLIEKIAAGADISKAAAGRALDAIIASVTESLKEGDDVALVGFGTFAVKERAARTGRNPQTGKEITIAAAKVPSFRAGKALKDAVN. 0 48.0 44.0 4.533695974509323E-24 9.067391949018645E-24 0.0
/home/xiaowen/c_project/proteomics_cpp/testcases/data/st_no_digestion.msalign 1557 2149 2871 145 10 9234.029989585939 9234.010030942383 870 gi|16763832|ref|NP_459447.1| DNA-binding protein HU-beta [Salmonella typhimurium LT2] 9234.010030942383 1 90 .MNKSQLIEKIAAGADISKAAAGRALDAIIASVTESLKEGDDVALVGFGTFAVKERAARTGRNPQTGKEITIAAAKVPSFRAGKALKDAVN. 0 49.0 41.0 5.9107174258743685E-24 1.1821434851748737E-23 0.0
/home/xiaowen/c_project/proteomics_cpp/testcases/data/st_no_digestion.msalign 1790 2507 3348 89 7 10678.642533234375 10678.578062253418 6388 gi|16766604|ref|NP_462219.1| hypothetical protein STM3309 [Salmonella typhimurium LT2] 10678.578062253418 1 98 .MTPQLTWTREADTLVLAGELDQDVLAPLWDARVEAMNGVTRIDLSQISRVDTGGLALLAHLVNQAKKQGNAVSLSGVNDKVYALAQLYNLPEDVLPRM. 0 39.0 38.0 7.497701361100807E-24 1.4995402722201614E-23 0.0
/home/xiaowen/c_project/proteomics_cpp/testcases/data/st_no_digestion.msalign 1558 2150 2872 153 11 9234.023568078126 9234.010030942383 870 gi|16763832|ref|NP_459447.1| DNA-binding protein HU-beta [Salmonella typhimurium LT2] 9234.010030942383 1 90 .MNKSQLIEKIAAGADISKAAAGRALDAIIASVTESLKEGDDVALVGFGTFAVKERAARTGRNPQTGKEITIAAAKVPSFRAGKALKDAVN. 0 54.0 41.0 7.737128139527348E-24 1.5474256279054696E-23 0.0
/home/xiaowen/c_project/proteomics_cpp/testcases/data/st_no_digestion.msalign 337 737 988 160 11 9628.740410429687 9628.722135739747 738 gi|16763764|ref|NP_459379.1| phosphate starvation-inducible protein [Salmonella typhimurium LT2] 11830.048254208985 22 106 A.TEKPLTPQQQRMTTCNQQATAQALKGDARKTYLSDCLKNSQSAPGEKSLTPQQQKMRECNVQATEQSLKGDDRSKFMSACLKKAA. 0 54.0 37.0 7.919697522475392E-25 1.7423334549445862E-23 0.0
/home/xiaowen/c_project/proteomics_cpp/testcases/data/st_no_digestion.msalign 1740 2403 3210 112 7 11781.171228304687 11781.136228304687 7558 gi|16767191|ref|NP_462806.1| thioredoxin 1 [Salmonella typhimurium LT2] 11913.153913693848 2 109 M.SDKIIHLTDDSFDTDV(L)[-.98]KADGAILVDFWAEWCGPCKMIAPILDEIADEYQGKLTVAKLNIDQNPGTAPKYGIRGIPTLLLFKNGEVAATKVGALSKGQLKEFLDANLA. 1 38.0 38.0 1.5852679323239224E-22 1.8108637534623267E-23 0.0
/home/xiaowen/c_project/proteomics_cpp/testcases/data/st_no_digestion.msalign 1042 1474 1971 163 17 10534.671421769535 10534.58869 4296 gi|16765553|ref|NP_461168.1| 50S ribosomal subunit protein L25 [Salmonella typhimurium LT2] 10534.58869 1 94 .MFTINAEVRKEQGKGASRRLRAANKFPAIIYGGSEAPIAIELDHDQVMNMQAKAEFYSEVLTLVVDGKEVKVKAQAVQRHAYKPKLTHIDFVRA. 0 55.0 31.0 9.29064454006103E-24 1.858128908012206E-23 0.0
/home/xiaowen/c_project/proteomics_cpp/testcases/data/st_no_digestion.msalign 1290 1783 2383 111 6 7256.00464275 7255.987646298829 6624 gi|16766721|ref|NP_462336.1| 50S ribosomal subunit protein L29 [Salmonella typhimurium LT2] 7255.987646298828 1 63 .MKAKELREKSVEELNTELLNLLREQFNLRMQAASGQLQQSHLLKQVRRDVARVKTLLTEKAGA. 0 41.0 34.0 9.738314884168722E-24 1.9476629768337445E-23 0.0
/home/xiaowen/c_project/proteomics_cpp/testcases/data/st_no_digestion.msalign 1606 2224 2971 91 9 9306.7312263125 9306.687360959471 7882 gi|16767354|ref|NP_462969.1| putative cytoplasmic protein [Salmonella typhimurium LT2] 9306.687360959473 1 79 .MSLEVFEKLEAKVQQAIDTITLLQMEIEELKEKNNSLTQEVQSAQHQREELERENNSLKEQQSGWQERLQALLGRMEEV. 0 54.0 40.0 9.979643653100083E-24 1.9959287306200165E-23 0.0
/home/xiaowen/c_project/proteomics_cpp/testcases/data/st_no_digestion.msalign 1905 2763 3690 203 12 12201.566033718751 12201.61603371875 7986 gi|16767406|ref|NP_463021.1| 50S ribosomal subunit protein L7/L12 [Salmonella typhimurium LT2] 12291.470907407227 2 121 M.(SITKDQ)[42.01]IIEAVSAMSVMDVVELISAMEEKFGV(SA)[-.82]AAAVAVAAGPAEAAEEKTEFDVILKAAGANKVAVIKAVRGATGLGLKEAKDLVESAPAALKEGVSKDDAEALKKSLEEAGAEVEVK. 1 66.0 50.0 8.272050215653674E-23 2.2608141025996485E-23 0.0
/home/xiaowen/c_project/proteomics_cpp/testcases/data/st_no_digestion.msalign 1788 2490 3326 58 6 8095.221331890626 8095.153410153809 4302 gi|16765556|ref|NP_461171.1| putative cytoplasmic protein [Salmonella typhimurium LT2] 8226.193906979981 2 75 M.PQLSRYSDEHVEQLLSELLSVLEKHKAPTDLSLMVLGNMVTNLINTSVAPAQRQAIANSFARALQSSISEDNAH. 0 32.0 30.0 2.4474037153325353E-23 2.4474037153325353E-23 0.0
/home/xiaowen/c_project/proteomics_cpp/testcases/data/st_no_digestion.msalign 1709 2355 3146 179 8 11231.8585563125 11231.8485563125 6542 gi|16766680|ref|NP_462295.1| factor-for-inversion stimulation protein [Salmonella typhimurium LT2] 11232.765684323731 1 98 .MFEQRVNSDVLTVSTVNSQDQVTQKPLRDSVKQALKNYFAQLNG(Q)[-.92]DVNDLYELVLAEVEQPLLDMVMQYTRGNQTRAALMMGINRGTLRKKLKKYGMN. 1 55.0 47.0 1.5285075094033437E-22 3.321754109636782E-23 0.0
/home/xiaowen/c_project/proteomics_cpp/testcases/data/st_no_digestion.msalign 1736 2394 3198 196 13 11782.248177773437 11782.113416867676 7558 gi|16767191|ref|NP_462806.1| thioredoxin 1 [Salmonella typhimurium LT2] 11913.153913693848 2 109 M.SDKIIHLTDDSFDTDVLKADGAILVDFWAEWCGPCKMIAPILDEIADEYQGKLTVAKLNIDQNPGTAPKYGIRGIPTLLLFKNGEVAATKVGALSKGQLKEFLDANLA. 0 61.0 42.0 3.363815794190544E-23 3.363815794190544E-23 0.0
/home/xiaowen/c_project/proteomics_cpp/testcases/data/st_no_digestion.msalign 473 880 1179 130 7 7825.943092390625 7825.943092390625 7898 gi|16767362|ref|NP_462977.1| 50S ribosomal subunit protein L31 [Salmonella typhimurium LT2] 7941.9762403540035 1 70 .MKKGIHPNYVEITATCSCGNVIKTHSTVGHDL(NLD)[-116.03]VCGKCHPFFTGKQRVVDTGGRVERFNKRFSIPGSK. 1 52.0 41.0 1.5709707881718408E-22 3.366073030654062E-23 0.0
/home/xiaowen/c_project/proteomics_cpp/testcases/data/st_no_digestion.msalign 431 837 1122 129 12 7941.968697109377 7941.976240354003 7898 gi|16767362|ref|NP_462977.1| 50S ribosomal subunit protein L31 [Salmonella typhimurium LT2] 7941.9762403540035 1 70 .MKKGIHPNYVEITATCSCGNVIKTHSTVGHDLNLDVCGKCHPFFTGKQRVVDTGGRVERFNKRFSIPGSK. 0 45.0 33.0 1.7967258632025988E-23 3.5934517264051975E-23 0.0
/home/xiaowen/c_project/proteomics_cpp/testcases/data/st_no_digestion.msalign 1031 1463 1956 115 6 7266.7536661875 7266.720510678711 3554 gi|16765178|ref|NP_460793.1| cold shock protein [Salmonella typhimurium LT2] 7397.761007504882 2 69 M.AKIKGQVKWFNESKGFGFITPADGSKDVFVHFSAIQGNGFKTLAEGQNVEFEIQDGQKGPAAVNVTAI. 0 60.0 38.0 3.9957157061525795E-23 3.9957157061525795E-23 0.0
/home/xiaowen/c_project/proteomics_cpp/testcases/data/st_no_digestion.msalign 972 1399 1871 114 6 6851.7180926562505 6851.6541196875005 5446 gi|16766132|ref|NP_461747.1| carbon storage regulator [Salmonella typhimurium LT2] 6851.6541196875 1 61 .MLILTRRVGETLMIGDEVTVTVLGVKGNQVRIGVNAPKEVSVHREEIYQRIQAEKSQQSSY. 0 46.0 40.0 2.0664229448172702E-23 4.1328458896345403E-23 0.0
/home/xiaowen/c_project/proteomics_cpp/testcases/data/st_no_digestion.msalign 1318 1819 2431 158 14 9515.224482398438 9515.17277355713 8022 gi|16767424|ref|NP_463039.1| DNA-binding protein HU-alpha [Salmonella typhimurium LT2] 9515.17277355713 1 90 .MNKTQLIDVIADKAELSKTQAKAALESTLAAITESLKEGDAVQLVGFGTFKVNHRAERTGRNPQTGKEIKIAAANVPAFVSGKALKDAVK. 0 56.0 39.0 2.1671642703169452E-23 4.3343285406338903E-23 0.0
/home/xiaowen/c_project/proteomics_cpp/testcases/data/st_no_digestion.msalign 174 561 754 104 8 6250.601164187499 6250.601164187499 7204 gi|16767012|ref|NP_462627.1| 50S ribosomal subunit protein L33 [Salmonella typhimurium LT2] 6367.619703488769 2 55 M.(AK)[14.02]GIREKIKLVSSAGTGHFYTTTKNKRTKPEKLELKKFDPVVRQHVIYKEAKIK. 1 45.0 37.0 3.682379641014045E-22 4.455847510816082E-23 0.0
/home/xiaowen/c_project/proteomics_cpp/testcases/data/st_no_digestion.msalign 1260 1749 2338 116 11 10099.436783597659 10099.348730283204 7232 gi|16767026|ref|NP_462641.1| RNA polymerase omega subunit [Salmonella typhimurium LT2] 10230.389227109375 2 91 M.ARVTVQDAVEKIGNRFDLVLVAARRARQMQVGGKDPLVPEENDKTTVIALREIEEGLINNQILDVRERQEQQEQEAAELQAVTAIAEGRR. 0 45.0 38.0 4.8799527144367235E-23 4.8799527144367235E-23 0.0
/home/xiaowen/c_project/proteomics_cpp/testcases/data/st_no_digestion.msalign 1009 1439 1924 135 8 8113.31444590625 8113.281858640137 1836 gi|16764314|ref|NP_459929.1| protein chain initiation factor IF-1 [Salmonella typhimurium LT2] 8244.32235546631 2 72 M.AKEDNIEMQGTVLETLPNTMFRVELENGHVVTAHISGKMRKNYIRILTGDKVTVELTPYDLSKGRIVFRSR. 0 49.0 35.0 2.485206156806843E-23 4.970412313613686E-23 0.0
/home/xiaowen/c_project/proteomics_cpp/testcases/data/st_no_digestion.msalign 858 1278 1710 161 11 9699.302471183597 9699.242078977051 6622 gi|16766720|ref|NP_462335.1| 30S ribosomal subunit protein S17 [Salmonella typhimurium LT2] 9830.282575803223 2 84 M.TDKIRTLQGRVVSDKMEKSIVVAIERFVKHPIYGKFIKRTTKMHVHDENNECGIGDVVEIRECRPLSKTKSWTLVRVVEKAVL. 0 44.0 37.0 5.678232696935458E-23 5.678232696935458E-23 0.0
/home/xiaowen/c_project/proteomics_cpp/testcases/data/st_no_digestion.msalign 474 881 1180 130 9 7825.950207871096 7825.950207871096 7898 gi|16767362|ref|NP_462977.1| 50S ribosomal subunit protein L31 [Salmonella typhimurium LT2] 7941.9762403540035 1 70 .MKKGIHPNYVEITATCSCGNVIKTHSTVGHDLNLDV(CGKC)[-116.03]HPFFTGKQRVVDTGGRVERFNKRFSIPGSK. 1 56.0 38.0 2.995168086564866E-22 6.417658809680496E-23 0.0
/home/xiaowen/c_project/proteomics_cpp/testcases/data/st_no_digestion.msalign 410 816 1094 132 12 7941.990669765627 7941.976240354003 7898 gi|16767362|ref|NP_462977.1| 50S ribosomal subunit protein L31 [Salmonella typhimurium LT2] 7941.9762403540035 1 70 .MKKGIHPNYVEITATCSCGNVIKTHSTVGHDLNLDVCGKCHPFFTGKQRVVDTGGRVERFNKRFSIPGSK. 0 47.0 33.0 3.543633366085497E-23 7.087266732170994E-23 0.0
/home/xiaowen/c_project/proteomics_cpp/testcases/data/st_no_digestion.msalign 973 1400 1872 112 6 6851.7180926562505 6851.6541196875005 5446 gi|16766132|ref|NP_461747.1| carbon storage regulator [Salmonella typhimurium LT2] 6851.6541196875 1 61 .MLILTRRVGETLMIGDEVTVTVLGVKGNQVRIGVNAPKEVSVHREEIYQRIQAEKSQQSSY. 0 41.0 38.0 3.608856167725102E-23 7.217712335450204E-23 0.0
/home/xiaowen/c_project/proteomics_cpp/testcases/data/st_no_digestion.msalign 415 821 1100 132 14 7942.0022408125 7941.976240354003 7898 gi|16767362|ref|NP_462977.1| 50S ribosomal subunit protein L31 [Salmonella typhimurium LT2] 7941.9762403540035 1 70 .MKKGIHPNYVEITATCSCGNVIKTHSTVGHDLNLDVCGKCHPFFTGKQRVVDTGGRVERFNKRFSIPGSK. 0 51.0 33.0 5.727506533123076E-23 1.1455013066246152E-22 0.0
/home/xiaowen/c_project/proteomics_cpp/testcases/data/st_no_digestion.msalign 748 1164 1558 171 16 10278.70043625 10278.658636289063 6632 gi|16766725|ref|NP_462340.1| 30S ribosomal subunit protein S19 [Salmonella typhimurium LT2] 10409.699133115235 2 92 M.PRSLKKGPFIDLHLLKKVEKAVESGDKKPLRTWSRRSTIFPNMIGLTIAVHNGRQHVPVFVSDEMVGHKLGEFAPTRTYRGHAADKKAKKK. 0 48.0 33.0 1.2480098141989056E-22 1.2480098141989056E-22 0.0
/home/xiaowen/c_project/proteomics_cpp/testcases/data/st_no_digestion.msalign 900 1321 1767 123 11 8323.103735132812 8323.048940854493 8154 gi|16767490|ref|NP_463105.1| putative cytoplasmic protein [Salmonella typhimurium LT2] 8454.089437680665 2 70 M.MNKDEAGGNWKQFKGKMKEQWGKLTDDDMTVIEGKRDQLVGKIQERYGYQKDQAEKEVVDWETRNNYRW. 0 36.0 32.0 6.291152284344882E-23 1.2582304568689763E-22 0.0
/home/xiaowen/c_project/proteomics_cpp/testcases/data/st_no_digestion.msalign 417 823 1103 132 14 7942.007367765625 7941.976240354003 7898 gi|16767362|ref|NP_462977.1| 50S ribosomal subunit protein L31 [Salmonella typhimurium LT2] 7941.9762403540035 1 70 .MKKGIHPNYVEITATCSCGNVIKTHSTVGHDLNLDVCGKCHPFFTGKQRVVDTGGRVERFNKRFSIPGSK. 0 53.0 34.0 6.341239687528461E-23 1.2682479375056921E-22 0.0
/home/xiaowen/c_project/proteomics_cpp/testcases/data/st_no_digestion.msalign 1022 1454 1944 99 6 7026.269570328124 7026.229570328125 270 gi|16763528|ref|NP_459143.1| putative cytoplasmic protein [Salmonella typhimurium LT2] 7273.337148862304 2 63 M.SDVTVV(NCPTCGK)[-116.07]PVVWGEISPFRPFCSKRCQLIDLGEWAAEEKRIASSGDQSDSDDWSEER. 1 42.0 38.0 9.97346393522125E-22 1.3474135456146708E-22 0.0
/home/xiaowen/c_project/proteomics_cpp/testcases/data/st_no_digestion.msalign 938 1361 1820 110 7 7264.656912648437 7264.61311932129 6494 gi|16766657|ref|NP_462272.1| putative periplasmic protein [Salmonella typhimurium LT2] 9528.873335080567 23 88 A.AVHQVNAEQAQNLQPMGTISVSQIGSTPMDMRQEIVAKAEKAGANSYRIIELKEGDNWHATAELYK. 0 55.0 39.0 5.7008322977338246E-24 1.8812746582521622E-22 0.0
/home/xiaowen/c_project/proteomics_cpp/testcases/data/st_no_digestion.msalign 179 566 760 104 8 6250.603605593749 6250.603605593749 7204 gi|16767012|ref|NP_462627.1| 50S ribosomal subunit protein L33 [Salmonella typhimurium LT2] 6367.619703488769 2 55 M.(AK)[14.02]GIREKIKLVSSAGTGHFYTTTKNKRTKPEKLELKKFDPVVRQHVIYKEAKIK. 1 41.0 33.0 1.935136972869771E-21 2.343744505532401E-22 0.0
/home/xiaowen/c_project/proteomics_cpp/testcases/data/st_no_digestion.msalign 419 825 1106 132 13 7942.012751675782 7941.9762403540035 7898 gi|16767362|ref|NP_462977.1| 50S ribosomal subunit protein L31 [Salmonella typhimurium LT2] 7941.9762403540035 1 70 .MKKGIHPNYVEITATCSCGNVIKTHSTVGHDLNLDVCGKCHPFFTGKQRVVDTGGRVERFNKRFSIPGSK. 0 46.0 33.0 1.1951933709371137E-22 2.3903867418742274E-22 0.0
/home/xiaowen/c_project/proteomics_cpp/testcases/data/st_no_digestion.msalign 1646 2272 3035 140 6 9175.679595984375 9175.646864133303 7882 gi|16767354|ref|NP_462969.1| putative cytoplasmic protein [Salmonella typhimurium LT2] 9306.687360959473 2 79 M.SLEVFEKLEAKVQQAIDTITLLQMEIEELKEKNNSLTQEVQSAQHQREELERENNSLKEQQSGWQERLQALLGRMEEV. 0 52.0 45.0 2.399919743776189E-22 2.399919743776189E-22 0.0
/home/xiaowen/c_project/proteomics_cpp/testcases/data/st_no_digestion.msalign 971 1398 1870 112 7 6851.713380132813 6851.6541196875 5446 gi|16766132|ref|NP_461747.1| carbon storage regulator [Salmonella typhimurium LT2] 6851.6541196875 1 61 .MLILTRRVGETLMIGDEVTVTVLGVKGNQVRIGVNAPKEVSVHREEIYQRIQAEKSQQSSY. 0 49.0 38.0 1.2518490692977745E-22 2.503698138595549E-22 0.0
/home/xiaowen/c_project/proteomics_cpp/testcases/data/st_no_digestion.msalign 1083 1535 2052 117 9 7315.786160476564 7315.736898618164 1216 gi|16764006|ref|NP_459621.1| negative regulator [Salmonella typhimurium LT2] 7446.7773954443355 2 69 M.SKIKGNVKWFNESKGFGFITPEDGSKDVFVHFSAIQTNGFKTLAEGQRVEFEITNGAKGPSAANVTAL. 0 50.0 29.0 1.3709722596547263E-22 2.7419445193094525E-22 0.0
/home/xiaowen/c_project/proteomics_cpp/testcases/data/st_no_digestion.msalign 339 739 991 160 13 9628.76260159375 9628.722135739747 738 gi|16763764|ref|NP_459379.1| phosphate starvation-inducible protein [Salmonella typhimurium LT2] 11830.048254208985 22 106 A.TEKPLTPQQQRMTTCNQQATAQALKGDARKTYLSDCLKNSQSAPGEKSLTPQQQKMRECNVQATEQSLKGDDRSKFMSACLKKAA. 0 46.0 35.0 1.2515786151946909E-23 2.878630814947789E-22 0.0
/home/xiaowen/c_project/proteomics_cpp/testcases/data/st_no_digestion.msalign 1602 2218 2963 59 9 8553.373599226561 8553.319486813965 2166 gi|16764476|ref|NP_460091.1| putative cytoplasmic protein [Salmonella typhimurium LT2] 8684.359983640137 2 75 M.PTQEAKAHRVGEWASLRNTSPEIAEAIFEVAHYDEKLAEKIWEEGSDEVLIKAFEKTDKDSLFWGEQIIERKNV. 0 26.0 26.0 3.3230953255352186E-22 3.3230953255352186E-22 0.0
/home/xiaowen/c_project/proteomics_cpp/testcases/data/st_no_digestion.msalign 1543 2135 2852 153 14 9234.108551601563 9234.010030942383 870 gi|16763832|ref|NP_459447.1| DNA-binding protein HU-beta [Salmonella typhimurium LT2] 9234.010030942383 1 90 .MNKSQLIEKIAAGADISKAAAGRALDAIIASVTESLKEGDDVALVGFGTFAVKERAARTGRNPQTGKEITIAAAKVPSFRAGKALKDAVN. 0 64.0 38.0 1.9832552808215335E-22 3.966510561643067E-22 0.0
/home/xiaowen/c_project/proteomics_cpp/testcases/data/st_no_digestion.msalign 73 446 600 105 9 6311.3986137226575 6311.390989499511 2302 gi|16764546|ref|NP_460161.1| 50S ribosomal subunit protein L32 [Salmonella typhimurium LT2] 6442.431486325683 2 57 M.AVQQNKPTRSKRGMRRSHDALTAVTSLSVDKTSGEKHLRHHITADGYYRGRKVIAK. 0 40.0 30.0 4.1068654766366326E-22 4.1068654766366326E-22 0.0
/home/xiaowen/c_project/proteomics_cpp/testcases/data/st_no_digestion.msalign 927 1350 1806 152 10 9169.743509562502 9169.690111356202 7154 gi|16766987|ref|NP_462602.1| glutaredoxin 3 [Salmonella typhimurium LT2] 9300.730608182374 2 83 M.ANIEIYTKATCPFCHRAKALLNSKGVSFQEIAIDGDAVKREEMIKRSGRTTVPQIFIDAQHIGGCDDLYALDARGGLDPLLR. 0 43.0 40.0 4.198696563381043E-22 4.198696563381043E-22 0.0
/home/xiaowen/c_project/proteomics_cpp/testcases/data/st_no_digestion.msalign 62 435 586 97 9 6311.4074027851575 6311.390989499511 2302 gi|16764546|ref|NP_460161.1| 50S ribosomal subunit protein L32 [Salmonella typhimurium LT2] 6442.431486325683 2 57 M.AVQQNKPTRSKRGMRRSHDALTAVTSLSVDKTSGEKHLRHHITADGYYRGRKVIAK. 0 37.0 29.0 4.871585781097293E-22 4.871585781097293E-22 0.0
/home/xiaowen/c_project/proteomics_cpp/testcases/data/st_no_digestion.msalign 565 972 1302 47 4 3110.647014796875 3110.6345579199224 7986 gi|16767406|ref|NP_463021.1| 50S ribosomal subunit protein L7/L12 [Salmonella typhimurium LT2] 12291.470907407227 92 121 A.PAALKEGVSKDDAEALKKSLEEAGAEVEVK. 0 26.0 24.0 1.9510939630599604E-23 4.877734907649901E-22 0.0
/home/xiaowen/c_project/proteomics_cpp/testcases/data/st_no_digestion.msalign 944 1367 1828 121 7 7264.63555034375 7264.61311932129 6494 gi|16766657|ref|NP_462272.1| putative periplasmic protein [Salmonella typhimurium LT2] 9528.873335080567 23 88 A.AVHQVNAEQAQNLQPMGTISVSQIGSTPMDMRQEIVAKAEKAGANSYRIIELKEGDNWHATAELYK. 0 58.0 38.0 1.7653429413904037E-23 5.825631706588332E-22 0.0
/home/xiaowen/c_project/proteomics_cpp/testcases/data/st_no_digestion.msalign 176 563 756 104 8 6250.601164187499 6250.601164187499 7204 gi|16767012|ref|NP_462627.1| 50S ribosomal subunit protein L33 [Salmonella typhimurium LT2] 6367.619703488769 2 55 M.(AK)[14.02]GIREKIKLVSSAGTGHFYTTTKNKRTKPEKLELKKFDPVVRQHVIYKEAKIK. 1 41.0 35.0 4.829319540893242E-21 5.843697161354836E-22 0.0
/home/xiaowen/c_project/proteomics_cpp/testcases/data/st_no_digestion.msalign 1079 1531 2047 121 8 7315.78843159375 7315.736898618164 1216 gi|16764006|ref|NP_459621.1| negative regulator [Salmonella typhimurium LT2] 7446.7773954443355 2 69 M.SKIKGNVKWFNESKGFGFITPEDGSKDVFVHFSAIQTNGFKTLAEGQRVEFEITNGAKGPSAANVTAL. 0 53.0 29.0 3.1417090308505494E-22 6.283418061701099E-22 0.0
/home/xiaowen/c_project/proteomics_cpp/testcases/data/st_no_digestion.msalign 342 742 995 160 10 9628.756841703127 9628.722135739747 738 gi|16763764|ref|NP_459379.1| phosphate starvation-inducible protein [Salmonella typhimurium LT2] 11830.048254208985 22 106 A.TEKPLTPQQQRMTTCNQQATAQALKGDARKTYLSDCLKNSQSAPGEKSLTPQQQKMRECNVQATEQSLKGDDRSKFMSACLKKAA. 0 43.0 36.0 3.310838518628861E-23 7.283844740983494E-22 0.0
/home/xiaowen/c_project/proteomics_cpp/testcases/data/st_no_digestion.msalign 1881 2718 3630 83 12 9876.393102609376 9876.304434018555 736 gi|16763763|ref|NP_459378.1| putative cytoplasmic protein [Salmonella typhimurium LT2] 10106.413343625489 3 88 V.MKNLIAELLLKLAQKEEESKELVAQVEALEIIVTAMLRNMAQNEQEMLIRQVEGALEGVKPDASVPDHDTELLRQYVKKLLRHPRH. 0 44.0 30.0 3.9535016798170465E-23 7.511653191652389E-22 0.0
/home/xiaowen/c_project/proteomics_cpp/testcases/data/st_no_digestion.msalign 1076 1528 2043 121 8 7315.78159565625 7315.736898618164 1216 gi|16764006|ref|NP_459621.1| negative regulator [Salmonella typhimurium LT2] 7446.7773954443355 2 69 M.SKIKGNVKWFNESKGFGFITPEDGSKDVFVHFSAIQTNGFKTLAEGQRVEFEITNGAKGPSAANVTAL. 0 56.0 29.0 4.01701366345114E-22 8.03402732690228E-22 0.0
/home/xiaowen/c_project/proteomics_cpp/testcases/data/st_no_digestion.msalign 1289 1782 2382 116 6 7256.00464275 7255.987646298829 6624 gi|16766721|ref|NP_462336.1| 50S ribosomal subunit protein L29 [Salmonella typhimurium LT2] 7255.987646298828 1 63 .MKAKELREKSVEELNTELLNLLREQFNLRMQAASGQLQQSHLLKQVRRDVARVKTLLTEKAGA. 0 36.0 32.0 5.046866520580884E-22 1.0093733041161768E-21 0.0
/home/xiaowen/c_project/proteomics_cpp/testcases/data/st_no_digestion.msalign 965 1391 1860 108 7 6851.6898815976565 6851.6541196875 5446 gi|16766132|ref|NP_461747.1| carbon storage regulator [Salmonella typhimurium LT2] 6851.6541196875 1 61 .MLILTRRVGETLMIGDEVTVTVLGVKGNQVRIGVNAPKEVSVHREEIYQRIQAEKSQQSSY. 0 42.0 37.0 5.743396935623569E-22 1.1486793871247137E-21 0.0
/home/xiaowen/c_project/proteomics_cpp/testcases/data/st_no_digestion.msalign 1620 2246 3000 147 8 9191.709242437499 9191.6492424375 7882 gi|16767354|ref|NP_462969.1| putative cytoplasmic protein [Salmonella typhimurium LT2] 9306.687360959473 2 79 M.(SLEV)[16.00]FEKLEAKVQQAIDTITLLQMEIEELKEKNNSLTQEVQSAQHQREELERENNSLKEQQSGWQERLQALLGRMEEV. 1 60.0 45.0 4.97263364309654E-21 1.44996420247301E-21 0.0
/home/xiaowen/c_project/proteomics_cpp/testcases/data/st_no_digestion.msalign 1044 1476 1974 163 17 10533.657689859378 10533.652689859377 4296 gi|16765553|ref|NP_461168.1| 50S ribosomal subunit protein L25 [Salmonella typhimurium LT2] 10534.58869 1 94 .MFTINAEVRKEQGKGASRRLRAANKFPAIIYGGSEA(P)[-.94]IAIELDHDQVMNMQAKAEFYSEVLTLVVDGKEVKVKAQAVQRHAYKPKLTHIDFVRA. 1 52.0 31.0 6.957402680280627E-21 1.4893420207450834E-21 0.0
/home/xiaowen/c_project/proteomics_cpp/testcases/data/st_no_digestion.msalign 1714 2365 3159 137 7 11232.809557898438 11232.765684323733 6542 gi|16766680|ref|NP_462295.1| factor-for-inversion stimulation protein [Salmonella typhimurium LT2] 11232.765684323731 1 98 .MFEQRVNSDVLTVSTVNSQDQVTQKPLRDSVKQALKNYFAQLNGQDVNDLYELVLAEVEQPLLDMVMQYTRGNQTRAALMMGINRGTLRKKLKKYGMN. 0 36.0 35.0 7.928680187585619E-22 1.5857360375171239E-21 0.0
/home/xiaowen/c_project/proteomics_cpp/testcases/data/st_no_digestion.msalign 1072 1524 2038 120 8 7315.7664589375 7315.736898618164 1216 gi|16764006|ref|NP_459621.1| negative regulator [Salmonella typhimurium LT2] 7446.7773954443355 2 69 M.SKIKGNVKWFNESKGFGFITPEDGSKDVFVHFSAIQTNGFKTLAEGQRVEFEITNGAKGPSAANVTAL. 0 53.0 29.0 8.693985310165622E-22 1.7387970620331244E-21 0.0
/home/xiaowen/c_project/proteomics_cpp/testcases/data/st_no_digestion.msalign 1542 2134 2851 153 10 9234.094076500001 9234.010030942383 870 gi|16763832|ref|NP_459447.1| DNA-binding protein HU-beta [Salmonella typhimurium LT2] 9234.010030942383 1 90 .MNKSQLIEKIAAGADISKAAAGRALDAIIASVTESLKEGDDVALVGFGTFAVKERAARTGRNPQTGKEITIAAAKVPSFRAGKALKDAVN. 0 43.0 35.0 8.74364287436377E-22 1.748728574872754E-21 0.0
/home/xiaowen/c_project/proteomics_cpp/testcases/data/st_no_digestion.msalign 1008 1438 1923 135 7 8113.309514875 8113.281858640137 1836 gi|16764314|ref|NP_459929.1| protein chain initiation factor IF-1 [Salmonella typhimurium LT2] 8244.32235546631 2 72 M.AKEDNIEMQGTVLETLPNTMFRVELENGHVVTAHISGKMRKNYIRILTGDKVTVELTPYDLSKGRIVFRSR. 0 44.0 38.0 8.807104897547852E-22 1.7614209795095703E-21 0.0
/home/xiaowen/c_project/proteomics_cpp/testcases/data/st_no_digestion.msalign 854 1274 1704 113 12 9699.305265984378 9699.24207897705 6622 gi|16766720|ref|NP_462335.1| 30S ribosomal subunit protein S17 [Salmonella typhimurium LT2] 9830.282575803223 2 84 M.TDKIRTLQGRVVSDKMEKSIVVAIERFVKHPIYGKFIKRTTKMHVHDENNECGIGDVVEIRECRPLSKTKSWTLVRVVEKAVL. 0 34.0 27.0 1.7860784432505882E-21 1.7860784432505882E-21 0.0
/home/xiaowen/c_project/proteomics_cpp/testcases/data/st_no_digestion.msalign 1075 1527 2042 121 9 7315.788907058595 7315.736898618164 1216 gi|16764006|ref|NP_459621.1| negative regulator [Salmonella typhimurium LT2] 7446.7773954443355 2 69 M.SKIKGNVKWFNESKGFGFITPEDGSKDVFVHFSAIQTNGFKTLAEGQRVEFEITNGAKGPSAANVTAL. 0 49.0 28.0 8.967218864424024E-22 1.793443772884805E-21 0.0
/home/xiaowen/c_project/proteomics_cpp/testcases/data/st_no_digestion.msalign 1127 1598 2136 151 13 9229.099470179688 9229.012678342286 5168 gi|16765991|ref|NP_461606.1| 30S ribosomal subunit protein S16 [Salmonella typhimurium LT2] 9229.012678342286 1 82 .MVTIRLARHGAKKRPFYQVVVTDSRNARNGRFIERVGFFNPIASEKEEGTRLDLDRIAHWVGQGATISDRVAALIKEVKKAA. 0 40.0 30.0 9.368123807824056E-22 1.8736247615648113E-21 0.0
/home/xiaowen/c_project/proteomics_cpp/testcases/data/st_no_digestion.msalign 1045 1477 1975 167 17 10533.657689859378 10533.642689859376 4296 gi|16765553|ref|NP_461168.1| 50S ribosomal subunit protein L25 [Salmonella typhimurium LT2] 10534.58869 1 94 .MFTINAEVRKEQGKGASRRLRAANKFPAIIYGGSEA(P)[-.95]IAIELDHDQVMNMQAKAEFYSEVLTLVVDGKEVKVKAQAVQRHAYKPKLTHIDFVRA. 1 61.0 34.0 9.530288126094435E-21 2.0401088205272386E-21 0.0
/home/xiaowen/c_project/proteomics_cpp/testcases/data/st_no_digestion.msalign 1035 1467 1962 162 16 10534.6759511875 10534.58869 4296 gi|16765553|ref|NP_461168.1| 50S ribosomal subunit protein L25 [Salmonella typhimurium LT2] 10534.58869 1 94 .MFTINAEVRKEQGKGASRRLRAANKFPAIIYGGSEAPIAIELDHDQVMNMQAKAEFYSEVLTLVVDGKEVKVKAQAVQRHAYKPKLTHIDFVRA. 0 57.0 34.0 1.0280679978883275E-21 2.056135995776655E-21 0.0
/home/xiaowen/c_project/proteomics_cpp/testcases/data/st_no_digestion.msalign 1813 2583 3450 52 7 8103.05219065625 8102.998132901612 3764 gi|16765287|ref|NP_460902.1| putative cytoplasmic protein [Salmonella typhimurium LT2] 8234.038629727784 2 74 M.STPDFSTAENNQELATEVNCLKAMLTLMLQAMGQADAGRVILKMEKQIAQMDDEAQAAVFSSTVKQIKQAYRQ. 0 28.0 26.0 2.0607426326418602E-21 2.0607426326418602E-21 0.0
/home/xiaowen/c_project/proteomics_cpp/testcases/data/st_no_digestion.msalign 407 813 1090 132 12 7958.00799475 7957.98799475 7898 gi|16767362|ref|NP_462977.1| 50S ribosomal subunit protein L31 [Salmonella typhimurium LT2] 7941.9762403540035 1 70 .MKKGIH(PNY)[16.01]VEITATCSCGNVIKTHSTVGHDLNLDVCGKCHPFFTGKQRVVDTGGRVERFNKRFSIPGSK. 1 41.0 32.0 9.417904077567988E-21 2.3241236581843655E-21 0.0
/home/xiaowen/c_project/proteomics_cpp/testcases/data/st_no_digestion.msalign 1003 1433 1916 135 11 8113.331009019531 8113.281858640137 1836 gi|16764314|ref|NP_459929.1| protein chain initiation factor IF-1 [Salmonella typhimurium LT2] 8244.32235546631 2 72 M.AKEDNIEMQGTVLETLPNTMFRVELENGHVVTAHISGKMRKNYIRILTGDKVTVELTPYDLSKGRIVFRSR. 0 53.0 36.0 1.2884445031918852E-21 2.5768890063837705E-21 0.0
/home/xiaowen/c_project/proteomics_cpp/testcases/data/st_no_digestion.msalign 1004 1434 1918 135 7 8113.32318675 8113.281858640137 1836 gi|16764314|ref|NP_459929.1| protein chain initiation factor IF-1 [Salmonella typhimurium LT2] 8244.32235546631 2 72 M.AKEDNIEMQGTVLETLPNTMFRVELENGHVVTAHISGKMRKNYIRILTGDKVTVELTPYDLSKGRIVFRSR. 0 42.0 36.0 1.4834500368952271E-21 2.9669000737904542E-21 0.0
/home/xiaowen/c_project/proteomics_cpp/testcases/data/st_no_digestion.msalign 1257 1746 2334 117 10 7256.035963554688 7255.987646298828 6624 gi|16766721|ref|NP_462336.1| 50S ribosomal subunit protein L29 [Salmonella typhimurium LT2] 7255.987646298828 1 63 .MKAKELREKSVEELNTELLNLLREQFNLRMQAASGQLQQSHLLKQVRRDVARVKTLLTEKAGA. 0 40.0 34.0 1.5856441090120002E-21 3.1712882180240005E-21 0.0
/home/xiaowen/c_project/proteomics_cpp/testcases/data/st_no_digestion.msalign 1850 2637 3522 202 13 12160.546193476563 12160.430410581057 7986 gi|16767406|ref|NP_463021.1| 50S ribosomal subunit protein L7/L12 [Salmonella typhimurium LT2] 12291.470907407227 2 121 M.SITKDQIIEAVSAMSVMDVVELISAMEEKFGVSAAAAVAVAAGPAEAAEEKTEFDVILKAAGANKVAVIKAVRGATGLGLKEAKDLVESAPAALKEGVSKDDAEALKKSLEEAGAEVEVK. 0 56.0 42.0 3.512050771812729E-21 3.512050771812729E-21 0.0
/home/xiaowen/c_project/proteomics_cpp/testcases/data/st_no_digestion.msalign 1325 1826 2440 106 9 9514.221189546875 9514.161189546876 8022 gi|16767424|ref|NP_463039.1| DNA-binding protein HU-alpha [Salmonella typhimurium LT2] 9515.17277355713 1 90 .MNKTQLIDVIADKAELSKTQAKAALESTLAAITESLKEGDAVQL(V)[-1.01]GFGTFKVNHRAERTGRNPQTGKEIKIAAANVPAFVSGKALKDAVK. 1 38.0 36.0 2.6506420490890385E-20 3.714210579117557E-21 0.0
/home/xiaowen/c_project/proteomics_cpp/testcases/data/st_no_digestion.msalign 1314 1815 2426 158 14 9515.282587867188 9515.17277355713 8022 gi|16767424|ref|NP_463039.1| DNA-binding protein HU-alpha [Salmonella typhimurium LT2] 9515.17277355713 1 90 .MNKTQLIDVIADKAELSKTQAKAALESTLAAITESLKEGDAVQLVGFGTFKVNHRAERTGRNPQTGKEIKIAAANVPAFVSGKALKDAVK. 0 49.0 34.0 1.9015795806103173E-21 3.803159161220635E-21 0.0
/home/xiaowen/c_project/proteomics_cpp/testcases/data/st_no_digestion.msalign 1273 1764 2358 131 12 10098.416507109376 10098.416507109376 7232 gi|16767026|ref|NP_462641.1| RNA polymerase omega subunit [Salmonella typhimurium LT2] 10230.389227109375 2 91 M.ARVTVQDAVEKIGNRFDLVLVAARRARQMQVGGK(D)[-.93]PLVPEENDKTTVIALREIEEGLINNQILDVRERQEQQEQEAAELQAVTAIAEGRR. 1 40.0 35.0 2.4840030395351017E-20 4.265459764858255E-21 0.0
/home/xiaowen/c_project/proteomics_cpp/testcases/data/st_no_digestion.msalign 1737 2395 3199 195 13 11782.248177773437 11782.113416867676 7558 gi|16767191|ref|NP_462806.1| thioredoxin 1 [Salmonella typhimurium LT2] 11913.153913693848 2 109 M.SDKIIHLTDDSFDTDVLKADGAILVDFWAEWCGPCKMIAPILDEIADEYQGKLTVAKLNIDQNPGTAPKYGIRGIPTLLLFKNGEVAATKVGALSKGQLKEFLDANLA. 0 65.0 41.0 4.771874631670125E-21 4.771874631670125E-21 0.0
/home/xiaowen/c_project/proteomics_cpp/testcases/data/st_no_digestion.msalign 1262 1751 2340 121 12 10098.453128203126 10098.453128203126 7232 gi|16767026|ref|NP_462641.1| RNA polymerase omega subunit [Salmonella typhimurium LT2] 10230.389227109375 2 91 M.ARVTVQDAVEKIGNRFDLVLVAARRARQMQVGGK(D)[-.90]PLVPEENDKTTVIALREIEEGLINNQILDVRERQEQQEQEAAELQAVTAIAEGRR. 1 38.0 32.0 2.988759902004887E-20 5.14210739766624E-21 0.0
/home/xiaowen/c_project/proteomics_cpp/testcases/data/st_no_digestion.msalign 1266 1755 2346 149 11 10098.412247464847 10098.412247464847 7232 gi|16767026|ref|NP_462641.1| RNA polymerase omega subunit [Salmonella typhimurium LT2] 10230.389227109375 2 91 M.ARVTVQDAVEKIGNRFDLVLVAARRARQMQVGGK(D)[-.94]PLVPEENDKTTVIALREIEEGLINNQILDVRERQEQQEQEAAELQAVTAIAEGRR. 1 48.0 41.0 3.2099091727956946E-20 5.5109049470427195E-21 0.0
/home/xiaowen/c_project/proteomics_cpp/testcases/data/st_no_digestion.msalign 1415 1957 2615 126 10 9113.83472408594 9113.737188535157 4692 gi|16765751|ref|NP_461366.1| phosphohistidinoprotein-hexose phosphotransferase [Salmonella typhimurium LT2] 9113.737188535157 1 85 .MFQQEVTITAPNGLHTRPAAQFVKEAKGFTSEITVTSNGKSASAKSLFKLQTLGLTQGTVVTISAEGEDEQKAVEHLVKLMAELE. 0 36.0 31.0 5.557887527391173E-21 1.1115775054782347E-20 0.0
/home/xiaowen/c_project/proteomics_cpp/testcases/data/st_no_digestion.msalign 747 1163 1556 171 17 10278.707564546878 10278.658636289063 6632 gi|16766725|ref|NP_462340.1| 30S ribosomal subunit protein S19 [Salmonella typhimurium LT2] 10409.699133115235 2 92 M.PRSLKKGPFIDLHLLKKVEKAVESGDKKPLRTWSRRSTIFPNMIGLTIAVHNGRQHVPVFVSDEMVGHKLGEFAPTRTYRGHAADKKAKKK. 0 45.0 29.0 1.1927081297527648E-20 1.1927081297527648E-20 0.0
/home/xiaowen/c_project/proteomics_cpp/testcases/data/st_no_digestion.msalign 197 592 795 104 9 6250.604691410157 6250.604691410157 7204 gi|16767012|ref|NP_462627.1| 50S ribosomal subunit protein L33 [Salmonella typhimurium LT2] 6367.619703488769 2 55 M.(A)[14.03]KGIREKIKLVSSAGTGHFYTTTKNKRTKPEKLELKKFDPVVRQHVIYKEAKIK. 1 33.0 27.0 1.0376321527859634E-19 1.2567299839500927E-20 0.0
/home/xiaowen/c_project/proteomics_cpp/testcases/data/st_no_digestion.msalign 1091 1545 2066 151 13 9229.079633753907 9229.012678342286 5168 gi|16765991|ref|NP_461606.1| 30S ribosomal subunit protein S16 [Salmonella typhimurium LT2] 9229.012678342286 1 82 .MVTIRLARHGAKKRPFYQVVVTDSRNARNGRFIERVGFFNPIASEKEEGTRLDLDRIAHWVGQGATISDRVAALIKEVKKAA. 0 42.0 31.0 6.360136683705149E-21 1.2720273367410299E-20 0.0
/home/xiaowen/c_project/proteomics_cpp/testcases/data/st_no_digestion.msalign 476 883 1183 130 11 7825.957445421876 7825.957445421876 7898 gi|16767362|ref|NP_462977.1| 50S ribosomal subunit protein L31 [Salmonella typhimurium LT2] 7941.9762403540035 1 70 .MKKGIHPNYVEITATCSCGNVIKTHSTVGHDLNLDV(CGKC)[-116.02]HPFFTGKQRVVDTGGRVERFNKRFSIPGSK. 1 46.0 33.0 6.102762758927579E-20 1.2881043442352039E-20 0.0
/home/xiaowen/c_project/proteomics_cpp/testcases/data/st_no_digestion.msalign 462 869 1164 130 8 7825.9345956875 7825.9345956875 7898 gi|16767362|ref|NP_462977.1| 50S ribosomal subunit protein L31 [Salmonella typhimurium LT2] 7941.9762403540035 1 70 .MKKGIHPNYVEITAT(C)[-116.04]SCGNVIKTHSTVGHDLNLDVCGKCHPFFTGKQRVVDTGGRVERFNKRFSIPGSK. 1 52.0 38.0 6.276405135087288E-20 1.324754875791169E-20 0.0
/home/xiaowen/c_project/proteomics_cpp/testcases/data/st_no_digestion.msalign 450 857 1148 134 9 8094.003468968751 8094.003468968751 7898 gi|16767362|ref|NP_462977.1| 50S ribosomal subunit protein L31 [Salmonella typhimurium LT2] 7941.9762403540035 1 70 .MKKGIHPNYVEITATCS(C)[152.03]GNVIKTHSTVGHDLNLDVCGKCHPFFTGKQRVVDTGGRVERFNKRFSIPGSK. 1 47.0 36.0 5.2911745149783316E-20 1.334362245521229E-20 0.0
/home/xiaowen/c_project/proteomics_cpp/testcases/data/st_no_digestion.msalign 746 1162 1555 150 16 10278.698483125 10278.658636289063 6632 gi|16766725|ref|NP_462340.1| 30S ribosomal subunit protein S19 [Salmonella typhimurium LT2] 10409.699133115235 2 92 M.PRSLKKGPFIDLHLLKKVEKAVESGDKKPLRTWSRRSTIFPNMIGLTIAVHNGRQHVPVFVSDEMVGHKLGEFAPTRTYRGHAADKKAKKK. 0 40.0 30.0 1.3461210785625537E-20 1.3461210785625537E-20 0.0
/home/xiaowen/c_project/proteomics_cpp/testcases/data/st_no_digestion.msalign 1005 1435 1919 135 7 8113.32318675 8113.281858640137 1836 gi|16764314|ref|NP_459929.1| protein chain initiation factor IF-1 [Salmonella typhimurium LT2] 8244.32235546631 2 72 M.AKEDNIEMQGTVLETLPNTMFRVELENGHVVTAHISGKMRKNYIRILTGDKVTVELTPYDLSKGRIVFRSR. 0 41.0 36.0 8.021357331124984E-21 1.6042714662249968E-20 0.0
/home/xiaowen/c_project/proteomics_cpp/testcases/data/st_no_digestion.msalign 1071 1523 2036 118 9 7315.779019363283 7315.736898618164 1216 gi|16764006|ref|NP_459621.1| negative regulator [Salmonella typhimurium LT2] 7446.7773954443355 2 69 M.SKIKGNVKWFNESKGFGFITPEDGSKDVFVHFSAIQTNGFKTLAEGQRVEFEITNGAKGPSAANVTAL. 0 46.0 28.0 9.381616508604941E-21 1.8763233017209882E-20 0.0
/home/xiaowen/c_project/proteomics_cpp/testcases/data/st_no_digestion.msalign 1603 2221 2967 89 11 8553.37589292969 8553.319486813965 2166 gi|16764476|ref|NP_460091.1| putative cytoplasmic protein [Salmonella typhimurium LT2] 8684.359983640137 2 75 M.PTQEAKAHRVGEWASLRNTSPEIAEAIFEVAHYDEKLAEKIWEEGSDEVLIKAFEKTDKDSLFWGEQIIERKNV. 0 43.0 30.0 2.0438629802328832E-20 2.0438629802328832E-20 0.0
/home/xiaowen/c_project/proteomics_cpp/testcases/data/st_no_digestion.msalign 63 436 587 103 9 6311.4074027851575 6311.390989499511 2302 gi|16764546|ref|NP_460161.1| 50S ribosomal subunit protein L32 [Salmonella typhimurium LT2] 6442.431486325683 2 57 M.AVQQNKPTRSKRGMRRSHDALTAVTSLSVDKTSGEKHLRHHITADGYYRGRKVIAK. 0 41.0 30.0 2.1582198202094016E-20 2.1582198202094016E-20 0.0
/home/xiaowen/c_project/proteomics_cpp/testcases/data/st_no_digestion.msalign 369 771 1034 150 10 9044.934587601565 9044.898699002684 6376 gi|16766598|ref|NP_462213.1| 50S ribosomal subunit protein L27 [Salmonella typhimurium LT2] 9175.939195828858 2 85 M.AHKKAGGSTRNGRDSEAKRLGVKRFGGEAVLAGSIIVRQRGTKFHAGTNVGCGRDHTLFAKADGKVKFEVKGPKNRKYISIVAE. 0 42.0 34.0 2.3094743197469645E-20 2.3094743197469645E-20 0.0
/home/xiaowen/c_project/proteomics_cpp/testcases/data/st_no_digestion.msalign 1007 1437 1922 135 10 8113.311856796875 8113.281858640137 1836 gi|16764314|ref|NP_459929.1| protein chain initiation factor IF-1 [Salmonella typhimurium LT2] 8244.32235546631 2 72 M.AKEDNIEMQGTVLETLPNTMFRVELENGHVVTAHISGKMRKNYIRILTGDKVTVELTPYDLSKGRIVFRSR. 0 46.0 32.0 1.2635780522675114E-20 2.5271561045350227E-20 0.0
/home/xiaowen/c_project/proteomics_cpp/testcases/data/st_no_digestion.msalign 71 444 598 99 8 6311.39752790625 6311.390989499511 2302 gi|16764546|ref|NP_460161.1| 50S ribosomal subunit protein L32 [Salmonella typhimurium LT2] 6442.431486325683 2 57 M.AVQQNKPTRSKRGMRRSHDALTAVTSLSVDKTSGEKHLRHHITADGYYRGRKVIAK. 0 40.0 29.0 2.6445925707407242E-20 2.6445925707407242E-20 0.0
/home/xiaowen/c_project/proteomics_cpp/testcases/data/st_no_digestion.msalign 649 1059 1418 149 11 8970.932021308598 8970.880617337647 7206 gi|16767013|ref|NP_462628.1| 50S ribosomal subunit protein L28 [Salmonella typhimurium LT2] 9101.921114163819 2 78 M.SRVCQVTGKRPVTGNNRSHALNATKRRFLPNLHSHRFWVESEKRFVTLRVSAKGMRIIDKKGIETVLSELRARGEKY. 0 36.0 30.0 3.08697641695778E-20 3.08697641695778E-20 0.0
/home/xiaowen/c_project/proteomics_cpp/testcases/data/st_no_digestion.msalign 66 439 591 105 8 6311.39752790625 6311.390989499511 2302 gi|16764546|ref|NP_460161.1| 50S ribosomal subunit protein L32 [Salmonella typhimurium LT2] 6442.431486325683 2 57 M.AVQQNKPTRSKRGMRRSHDALTAVTSLSVDKTSGEKHLRHHITADGYYRGRKVIAK. 0 41.0 30.0 3.4043178791524156E-20 3.4043178791524156E-20 0.0
/home/xiaowen/c_project/proteomics_cpp/testcases/data/st_no_digestion.msalign 752 1168 1563 171 18 10278.711519015624 10278.658636289065 6632 gi|16766725|ref|NP_462340.1| 30S ribosomal subunit protein S19 [Salmonella typhimurium LT2] 10409.699133115235 2 92 M.PRSLKKGPFIDLHLLKKVEKAVESGDKKPLRTWSRRSTIFPNMIGLTIAVHNGRQHVPVFVSDEMVGHKLGEFAPTRTYRGHAADKKAKKK. 0 44.0 29.0 3.505755158911636E-20 3.505755158911636E-20 0.0
/home/xiaowen/c_project/proteomics_cpp/testcases/data/st_no_digestion.msalign 749 1165 1559 166 17 10278.703414156253 10278.658636289063 6632 gi|16766725|ref|NP_462340.1| 30S ribosomal subunit protein S19 [Salmonella typhimurium LT2] 10409.699133115235 2 92 M.PRSLKKGPFIDLHLLKKVEKAVESGDKKPLRTWSRRSTIFPNMIGLTIAVHNGRQHVPVFVSDEMVGHKLGEFAPTRTYRGHAADKKAKKK. 0 42.0 28.0 4.0506837361923016E-20 4.0506837361923016E-20 0.0
/home/xiaowen/c_project/proteomics_cpp/testcases/data/st_no_digestion.msalign 1636 2262 3022 153 13 9262.089844625001 9262.029844625002 870 gi|16763832|ref|NP_459447.1| DNA-binding protein HU-beta [Salmonella typhimurium LT2] 9234.010030942383 1 90 .(MNKSQLIEKI)[28.02]AAGADISKAAAGRALDAIIASVTESLKEGDDVALVGFGTFAVKERAARTGRNPQTGKEITIAAAKVPSFRAGKALKDAVN. 1 68.0 39.0 3.283860848503514E-19 4.1724349604515243E-20 0.0
/home/xiaowen/c_project/proteomics_cpp/testcases/data/st_no_digestion.msalign 906 1327 1775 61 10 8323.093921289063 8323.048940854493 8154 gi|16767490|ref|NP_463105.1| putative cytoplasmic protein [Salmonella typhimurium LT2] 8454.089437680665 2 70 M.MNKDEAGGNWKQFKGKMKEQWGKLTDDDMTVIEGKRDQLVGKIQERYGYQKDQAEKEVVDWETRNNYRW. 0 28.0 24.0 2.293617163726046E-20 4.587234327452092E-20 0.0
/home/xiaowen/c_project/proteomics_cpp/testcases/data/st_no_digestion.msalign 745 1161 1554 117 15 10278.702951507812 10278.658636289065 6632 gi|16766725|ref|NP_462340.1| 30S ribosomal subunit protein S19 [Salmonella typhimurium LT2] 10409.699133115235 2 92 M.PRSLKKGPFIDLHLLKKVEKAVESGDKKPLRTWSRRSTIFPNMIGLTIAVHNGRQHVPVFVSDEMVGHKLGEFAPTRTYRGHAADKKAKKK. 0 34.0 27.0 4.884806957833964E-20 4.884806957833964E-20 0.0
/home/xiaowen/c_project/proteomics_cpp/testcases/data/st_no_digestion.msalign 1313 1814 2424 67 12 9515.226217015628 9515.17277355713 8022 gi|16767424|ref|NP_463039.1| DNA-binding protein HU-alpha [Salmonella typhimurium LT2] 9515.17277355713 1 90 .MNKTQLIDVIADKAELSKTQAKAALESTLAAITESLKEGDAVQLVGFGTFKVNHRAERTGRNPQTGKEIKIAAANVPAFVSGKALKDAVK. 0 29.0 25.0 2.779436956904911E-20 5.558873913809823E-20 0.0
/home/xiaowen/c_project/proteomics_cpp/testcases/data/st_no_digestion.msalign 1293 1786 2387 115 10 7256.053663750001 7255.987646298828 6624 gi|16766721|ref|NP_462336.1| 50S ribosomal subunit protein L29 [Salmonella typhimurium LT2] 7255.987646298828 1 63 .MKAKELREKSVEELNTELLNLLREQFNLRMQAASGQLQQSHLLKQVRRDVARVKTLLTEKAGA. 0 42.0 33.0 3.040298357590814E-20 6.080596715181627E-20 0.0
/home/xiaowen/c_project/proteomics_cpp/testcases/data/st_no_digestion.msalign 1240 1729 2311 72 9 6478.506700425782 6478.460607724609 3498 gi|16765150|ref|NP_460765.1| putative cytoplasmic protein [Salmonella typhimurium LT2] 6478.460607724609 1 57 .MNSEELTHKAEEEIAALISKKVAELRKKTGQEVSEIEFAPRETMKGLEGYHVKIKLL. 0 29.0 24.0 3.270469242631588E-20 6.540938485263176E-20 0.0
/home/xiaowen/c_project/proteomics_cpp/testcases/data/st_no_digestion.msalign 826 1244 1664 86 13 10658.609630421875 10658.552923398438 3628 gi|16765217|ref|NP_460832.1| putative copper resistance protein [Salmonella typhimurium LT2] 13312.989523129883 27 124 A.HAHLTHQYPAANAAVTASPQALTLNFSEGIEPGFSGATITGPQQELIKTRPAKRNEQDKTQLIIPLEQPLKSGAYTVDWHVVSVDGHKTKGKYTFSVK. 0 40.0 29.0 1.6806006748123076E-21 6.72240269924923E-20 0.0
/home/xiaowen/c_project/proteomics_cpp/testcases/data/st_no_digestion.msalign 1088 1542 2062 150 13 9229.089948695313 9229.012678342286 5168 gi|16765991|ref|NP_461606.1| 30S ribosomal subunit protein S16 [Salmonella typhimurium LT2] 9229.012678342286 1 82 .MVTIRLARHGAKKRPFYQVVVTDSRNARNGRFIERVGFFNPIASEKEEGTRLDLDRIAHWVGQGATISDRVAALIKEVKKAA. 0 43.0 34.0 3.776494733532414E-20 7.552989467064828E-20 0.0
/home/xiaowen/c_project/proteomics_cpp/testcases/data/st_no_digestion.msalign 1640 2266 3027 154 12 9262.080763203128 9262.025763203128 870 gi|16763832|ref|NP_459447.1| DNA-binding protein HU-beta [Salmonella typhimurium LT2] 9234.010030942383 1 90 .M(NKSQLIEKIA)[28.02]AGADISKAAAGRALDAIIASVTESLKEGDDVALVGFGTFAVKERAARTGRNPQTGKEITIAAAKVPSFRAGKALKDAVN. 1 48.0 40.0 6.977926153821833E-19 8.987872274216166E-20 0.0
/home/xiaowen/c_project/proteomics_cpp/testcases/data/st_no_digestion.msalign 1092 1546 2067 150 14 9229.084137539063 9229.012678342286 5168 gi|16765991|ref|NP_461606.1| 30S ribosomal subunit protein S16 [Salmonella typhimurium LT2] 9229.012678342286 1 82 .MVTIRLARHGAKKRPFYQVVVTDSRNARNGRFIERVGFFNPIASEKEEGTRLDLDRIAHWVGQGATISDRVAALIKEVKKAA. 0 42.0 29.0 4.669002946314764E-20 9.338005892629528E-20 0.0
/home/xiaowen/c_project/proteomics_cpp/testcases/data/st_no_digestion.msalign 1015 1445 1932 135 10 8113.321622421875 8113.281858640137 1836 gi|16764314|ref|NP_459929.1| protein chain initiation factor IF-1 [Salmonella typhimurium LT2] 8244.32235546631 2 72 M.AKEDNIEMQGTVLETLPNTMFRVELENGHVVTAHISGKMRKNYIRILTGDKVTVELTPYDLSKGRIVFRSR. 0 45.0 31.0 5.939671182599811E-20 1.1879342365199622E-19 0.0
/home/xiaowen/c_project/proteomics_cpp/testcases/data/st_no_digestion.msalign 151 538 723 57 5 4482.195779546877 4482.182546811524 3864 gi|16765337|ref|NP_460952.1| putative endoprotease [Salmonella typhimurium LT2] 16651.30049343628 2 46 M.ALTDTAGGTQTDPGTGKPSENPPAAPNKPTPPKEETPPGAPEKYA.F 0 29.0 23.0 1.930929996753097E-21 1.216485897954451E-19 0.0
/home/xiaowen/c_project/proteomics_cpp/testcases/data/st_no_digestion.msalign 463 870 1166 130 8 7825.9326425625 7825.9326425625 7898 gi|16767362|ref|NP_462977.1| 50S ribosomal subunit protein L31 [Salmonella typhimurium LT2] 7941.9762403540035 1 70 .MKKGIHPNYVEITAT(CSCGN)[-116.04]VIKTHSTVGHDLNLDVCGKCHPFFTGKQRVVDTGGRVERFNKRFSIPGSK. 1 50.0 36.0 5.978238976636864E-19 1.2809397311251027E-19 0.0
/home/xiaowen/c_project/proteomics_cpp/testcases/data/st_no_digestion.msalign 1284 1777 2375 120 8 7256.04624309375 7255.987646298828 6624 gi|16766721|ref|NP_462336.1| 50S ribosomal subunit protein L29 [Salmonella typhimurium LT2] 7255.987646298828 1 63 .MKAKELREKSVEELNTELLNLLREQFNLRMQAASGQLQQSHLLKQVRRDVARVKTLLTEKAGA. 0 37.0 34.0 7.955912411260726E-20 1.5911824822521452E-19 0.0
/home/xiaowen/c_project/proteomics_cpp/testcases/data/st_no_digestion.msalign 1154 1627 2175 107 11 12763.037683664066 12762.912683664064 6608 gi|16766713|ref|NP_462328.1| 50S ribosomal subunit protein L18 [Salmonella typhimurium LT2] 12761.967558103028 2 117 M.DKKSARIRRATRARRKLKELGATRLV(VHRTPRHIYAQVIA)[131.99]PNGSEVLVAASTVEKAIAEQLKYTGNKDAAAAVGKAVAERALEKGIKDVSFDRSGFQYHGRVQALADAAREAGLQF. 1 39.0 33.0 2.8615902437978874E-19 1.6586465836815714E-19 0.0
/home/xiaowen/c_project/proteomics_cpp/testcases/data/st_no_digestion.msalign 838 1256 1680 165 8 10406.187310187499 10406.1723101875 1966 gi|16764378|ref|NP_459993.1| hypothetical protein STM1018 [Phage Gifsy-2] 11265.5324689917 8 96 L.MYQRMIFEEGKEPRLYSSQHDSKFIPISNNNGKVQKV(P)[34.04]VMELKDTRGDVFYAYNYAYSGKKPSNDEIYKAIDELKPIGEKFEMSKTISD. 1 47.0 41.0 7.16736202528011E-21 1.7070716490070623E-19 0.0
/home/xiaowen/c_project/proteomics_cpp/testcases/data/st_no_digestion.msalign 442 849 1138 131 11 8094.011866187499 8094.011866187499 7898 gi|16767362|ref|NP_462977.1| 50S ribosomal subunit protein L31 [Salmonella typhimurium LT2] 7941.9762403540035 1 70 .MKKGIHPNYVEITAT(C)[152.04]SCGNVIKTHSTVGHDLNLDVCGKCHPFFTGKQRVVDTGGRVERFNKRFSIPGSK. 1 47.0 30.0 7.939071885916794E-19 1.9731096293937575E-19 0.0
/home/xiaowen/c_project/proteomics_cpp/testcases/data/st_no_digestion.msalign 1078 1530 2046 118 9 7315.79549885547 7315.736898618164 1216 gi|16764006|ref|NP_459621.1| negative regulator [Salmonella typhimurium LT2] 7446.7773954443355 2 69 M.SKIKGNVKWFNESKGFGFITPEDGSKDVFVHFSAIQTNGFKTLAEGQRVEFEITNGAKGPSAANVTAL. 0 52.0 27.0 1.0375003321142409E-19 2.0750006642284817E-19 0.0
/home/xiaowen/c_project/proteomics_cpp/testcases/data/st_no_digestion.msalign 886 1307 1748 107 11 10060.486955496095 10060.428564267579 6342 gi|16766581|ref|NP_462196.1| 30S ribosomal subunit protein S15 [Salmonella typhimurium LT2] 10191.46906109375 2 89 M.SLSTEATAKIVSEFGRDANDTGSTDVQVALLTAQINHLQGHFAEHKKDHHSRRGLLRMVSQRRKLLDYLKRKDVARYTALIERLGLRR. 0 35.0 29.0 2.1069778387856748E-19 2.1069778387856748E-19 0.0
/home/xiaowen/c_project/proteomics_cpp/testcases/data/st_no_digestion.msalign 411 817 1095 132 13 7941.999262906251 7941.9762403540035 7898 gi|16767362|ref|NP_462977.1| 50S ribosomal subunit protein L31 [Salmonella typhimurium LT2] 7941.9762403540035 1 70 .MKKGIHPNYVEITATCSCGNVIKTHSTVGHDLNLDVCGKCHPFFTGKQRVVDTGGRVERFNKRFSIPGSK. 0 46.0 29.0 1.5745610614419723E-19 3.1491221228839445E-19 0.0
/home/xiaowen/c_project/proteomics_cpp/testcases/data/st_no_digestion.msalign 1017 1447 1935 133 10 8113.319181015625 8113.281858640137 1836 gi|16764314|ref|NP_459929.1| protein chain initiation factor IF-1 [Salmonella typhimurium LT2] 8244.32235546631 2 72 M.AKEDNIEMQGTVLETLPNTMFRVELENGHVVTAHISGKMRKNYIRILTGDKVTVELTPYDLSKGRIVFRSR. 0 43.0 30.0 1.6614034639090731E-19 3.3228069278181462E-19 0.0
/home/xiaowen/c_project/proteomics_cpp/testcases/data/st_no_digestion.msalign 198 593 796 104 9 6250.604691410157 6250.604691410157 7204 gi|16767012|ref|NP_462627.1| 50S ribosomal subunit protein L33 [Salmonella typhimurium LT2] 6367.619703488769 2 55 M.(A)[14.03]KGIREKIKLVSSAGTGHFYTTTKNKRTKPEKLELKKFDPVVRQHVIYKEAKIK. 1 35.0 27.0 2.903598687139412E-18 3.516698592741975E-19 0.0
/home/xiaowen/c_project/proteomics_cpp/testcases/data/st_no_digestion.msalign 940 1363 1823 121 7 7264.664603078125 7264.61311932129 6494 gi|16766657|ref|NP_462272.1| putative periplasmic protein [Salmonella typhimurium LT2] 9528.873335080567 23 88 A.AVHQVNAEQAQNLQPMGTISVSQIGSTPMDMRQEIVAKAEKAGANSYRIIELKEGDNWHATAELYK. 0 58.0 37.0 1.0919378365133646E-20 3.821782427796776E-19 0.0
/home/xiaowen/c_project/proteomics_cpp/testcases/data/st_no_digestion.msalign 1879 2712 3622 40 12 9876.398961984376 9876.304434018555 736 gi|16763763|ref|NP_459378.1| putative cytoplasmic protein [Salmonella typhimurium LT2] 10106.413343625489 3 88 V.MKNLIAELLLKLAQKEEESKELVAQVEALEIIVTAMLRNMAQNEQEMLIRQVEGALEGVKPDASVPDHDTELLRQYVKKLLRHPRH. 0 28.0 20.0 2.1311099590599056E-20 3.83599792630783E-19 0.0
/home/xiaowen/c_project/proteomics_cpp/testcases/data/st_no_digestion.msalign 1252 1741 2327 118 10 7256.045729179688 7255.987646298828 6624 gi|16766721|ref|NP_462336.1| 50S ribosomal subunit protein L29 [Salmonella typhimurium LT2] 7255.987646298828 1 63 .MKAKELREKSVEELNTELLNLLREQFNLRMQAASGQLQQSHLLKQVRRDVARVKTLLTEKAGA. 0 38.0 31.0 2.0542133554735563E-19 4.1084267109471127E-19 0.0
/home/xiaowen/c_project/proteomics_cpp/testcases/data/st_no_digestion.msalign 1269 1759 2351 114 13 10098.4446315 10098.4146315 7232 gi|16767026|ref|NP_462641.1| RNA polymerase omega subunit [Salmonella typhimurium LT2] 10230.389227109375 2 91 M.ARVTVQDAVEKIGNRFDLVLVAARRARQMQVGGKDPLVPEENDKTTVIALREIE(EG)[-.93]LINNQILDVRERQEQQEQEAAELQAVTAIAEGRR. 1 35.0 30.0 2.4405414958192456E-18 4.1972893053640557E-19 0.0
/home/xiaowen/c_project/proteomics_cpp/testcases/data/st_no_digestion.msalign 1285 1778 2376 115 6 7256.043461109375 7255.987646298829 6624 gi|16766721|ref|NP_462336.1| 50S ribosomal subunit protein L29 [Salmonella typhimurium LT2] 7255.987646298828 1 63 .MKAKELREKSVEELNTELLNLLREQFNLRMQAASGQLQQSHLLKQVRRDVARVKTLLTEKAGA. 0 33.0 28.0 2.1280036787286907E-19 4.2560073574573815E-19 0.0
/home/xiaowen/c_project/proteomics_cpp/testcases/data/st_no_digestion.msalign 1338 1852 2475 54 11 9515.24795834766 9515.17277355713 8022 gi|16767424|ref|NP_463039.1| DNA-binding protein HU-alpha [Salmonella typhimurium LT2] 9515.17277355713 1 90 .MNKTQLIDVIADKAELSKTQAKAALESTLAAITESLKEGDAVQLVGFGTFKVNHRAERTGRNPQTGKEIKIAAANVPAFVSGKALKDAVK. 0 26.0 24.0 2.157089555434601E-19 4.314179110869202E-19 0.0
/home/xiaowen/c_project/proteomics_cpp/testcases/data/st_no_digestion.msalign 1013 1443 1930 135 12 8113.324892687501 8113.281858640137 1836 gi|16764314|ref|NP_459929.1| protein chain initiation factor IF-1 [Salmonella typhimurium LT2] 8244.32235546631 2 72 M.AKEDNIEMQGTVLETLPNTMFRVELENGHVVTAHISGKMRKNYIRILTGDKVTVELTPYDLSKGRIVFRSR. 0 47.0 33.0 2.19945681226027E-19 4.39891362452054E-19 0.0
/home/xiaowen/c_project/proteomics_cpp/testcases/data/st_no_digestion.msalign 170 557 748 104 9 6250.607437992188 6250.607437992188 7204 gi|16767012|ref|NP_462627.1| 50S ribosomal subunit protein L33 [Salmonella typhimurium LT2] 6367.619703488769 2 55 M.(A)[14.03]KGIREKIKLVSSAGTGHFYTTTKNKRTKPEKLELKKFDPVVRQHVIYKEAKIK. 1 34.0 29.0 3.654737239847669E-18 4.430491164499691E-19 0.0
/home/xiaowen/c_project/proteomics_cpp/testcases/data/st_no_digestion.msalign 134 519 698 74 8 4461.53795621875 4461.53295621875 7204 gi|16767012|ref|NP_462627.1| 50S ribosomal subunit protein L33 [Salmonella typhimurium LT2] 6367.619703488769 2 40 M.(A)[14.03]KGIREKIKLVSSAGTGHFYTTTKNKRTKPEKLELKKFD.P 1 40.0 30.0 1.3972476235729908E-20 4.890366682505468E-19 0.0
/home/xiaowen/c_project/proteomics_cpp/testcases/data/st_no_digestion.msalign 76 450 606 140 8 11096.894726125 11096.894726125 1452 gi|16764124|ref|NP_459739.1| hypothetical protein STM0759 [Salmonella typhimurium LT2] 13436.224081235352 25 128 A.AESNAQSSNGQANSAANAGQVAPDARQNVAPNDVNNNDINTNGNTNSTMQHPD(GSTMNHD)[32.03]GMTKDEEHKNTMCKDGRCPDINKKVETGNGVNNDVNTKTDGTTQ. 1 46.0 37.0 2.285296365440037E-20 5.498437316068482E-19 0.0
/home/xiaowen/c_project/proteomics_cpp/testcases/data/st_no_digestion.msalign 196 591 794 104 9 6250.604691410157 6250.604691410157 7204 gi|16767012|ref|NP_462627.1| 50S ribosomal subunit protein L33 [Salmonella typhimurium LT2] 6367.619703488769 2 55 M.(A)[14.03]KGIREKIKLVSSAGTGHFYTTTKNKRTKPEKLELKKFDPVVRQHVIYKEAKIK. 1 41.0 30.0 5.0305813087688535E-18 6.092797288956792E-19 0.0
/home/xiaowen/c_project/proteomics_cpp/testcases/data/st_no_digestion.msalign 968 1394 1864 114 7 6851.70056275 6851.6541196875 5446 gi|16766132|ref|NP_461747.1| carbon storage regulator [Salmonella typhimurium LT2] 6851.6541196875 1 61 .MLILTRRVGETLMIGDEVTVTVLGVKGNQVRIGVNAPKEVSVHREEIYQRIQAEKSQQSSY. 0 43.0 33.0 3.2870238113765863E-19 6.574047622753173E-19 0.0
/home/xiaowen/c_project/proteomics_cpp/testcases/data/st_no_digestion.msalign 65 438 590 103 9 6311.4008109882825 6311.390989499511 2302 gi|16764546|ref|NP_460161.1| 50S ribosomal subunit protein L32 [Salmonella typhimurium LT2] 6442.431486325683 2 57 M.AVQQNKPTRSKRGMRRSHDALTAVTSLSVDKTSGEKHLRHHITADGYYRGRKVIAK. 0 38.0 28.0 7.038889019308216E-19 7.038889019308216E-19 0.0
/home/xiaowen/c_project/proteomics_cpp/testcases/data/st_no_digestion.msalign 1279 1771 2367 107 10 7256.017653007813 7255.987646298828 6624 gi|16766721|ref|NP_462336.1| 50S ribosomal subunit protein L29 [Salmonella typhimurium LT2] 7255.987646298828 1 63 .MKAKELREKSVEELNTELLNLLREQFNLRMQAASGQLQQSHLLKQVRRDVARVKTLLTEKAGA. 0 31.0 28.0 3.7641757903439382E-19 7.5283515806878765E-19 0.0
/home/xiaowen/c_project/proteomics_cpp/testcases/data/st_no_digestion.msalign 1255 1744 2331 120 8 7256.04477825 7255.987646298828 6624 gi|16766721|ref|NP_462336.1| 50S ribosomal subunit protein L29 [Salmonella typhimurium LT2] 7255.987646298828 1 63 .MKAKELREKSVEELNTELLNLLREQFNLRMQAASGQLQQSHLLKQVRRDVARVKTLLTEKAGA. 0 39.0 33.0 4.2125677304766937E-19 8.425135460953387E-19 0.0
/home/xiaowen/c_project/proteomics_cpp/testcases/data/st_no_digestion.msalign 1242 1731 2314 71 9 6478.510545640625 6478.460607724609 3498 gi|16765150|ref|NP_460765.1| putative cytoplasmic protein [Salmonella typhimurium LT2] 6478.460607724609 1 57 .MNSEELTHKAEEEIAALISKKVAELRKKTGQEVSEIEFAPRETMKGLEGYHVKIKLL. 0 29.0 23.0 4.448377112998218E-19 8.896754225996437E-19 0.0
/home/xiaowen/c_project/proteomics_cpp/testcases/data/st_no_digestion.msalign 1099 1553 2076 148 14 9229.096100429688 9229.012678342286 5168 gi|16765991|ref|NP_461606.1| 30S ribosomal subunit protein S16 [Salmonella typhimurium LT2] 9229.012678342286 1 82 .MVTIRLARHGAKKRPFYQVVVTDSRNARNGRFIERVGFFNPIASEKEEGTRLDLDRIAHWVGQGATISDRVAALIKEVKKAA. 0 46.0 31.0 4.631494810271374E-19 9.262989620542749E-19 0.0
/home/xiaowen/c_project/proteomics_cpp/testcases/data/st_no_digestion.msalign 1544 2136 2854 153 14 9234.05471859375 9234.010030942383 870 gi|16763832|ref|NP_459447.1| DNA-binding protein HU-beta [Salmonella typhimurium LT2] 9234.010030942383 1 90 .MNKSQLIEKIAAGADISKAAAGRALDAIIASVTESLKEGDDVALVGFGTFAVKERAARTGRNPQTGKEITIAAAKVPSFRAGKALKDAVN. 0 57.0 35.0 4.828489297667366E-19 9.656978595334732E-19 0.0
/home/xiaowen/c_project/proteomics_cpp/testcases/data/st_no_digestion.msalign 832 1250 1672 140 13 10406.176076671874 10406.176076671874 1966 gi|16764378|ref|NP_459993.1| hypothetical protein STM1018 [Phage Gifsy-2] 11265.5324689917 8 96 L.MYQRMIFEEGKEPRLYSSQHDSKFIPISN(NNG)[34.04]KVQKVPVMELKDTRGDVFYAYNYAYSGKKPSNDEIYKAIDELKPIGEKFEMSKTISD. 1 48.0 35.0 4.122084008556988E-20 9.820261718532445E-19 0.0
/home/xiaowen/c_project/proteomics_cpp/testcases/data/st_no_digestion.msalign 286 686 920 57 5 4629.270351507814 4629.250951962891 3864 gi|16765337|ref|NP_460952.1| putative endoprotease [Salmonella typhimurium LT2] 16651.30049343628 2 47 M.ALTDTAGGTQTDPGTGKPSENPPAAPNKPTPPKEETPPGAPEKYAF.T 0 31.0 24.0 1.5085247342832163E-20 1.025796819312587E-18 0.0
/home/xiaowen/c_project/proteomics_cpp/testcases/data/st_no_digestion.msalign 966 1392 1862 108 8 6851.699146125 6851.6541196875 5446 gi|16766132|ref|NP_461747.1| carbon storage regulator [Salmonella typhimurium LT2] 6851.6541196875 1 61 .MLILTRRVGETLMIGDEVTVTVLGVKGNQVRIGVNAPKEVSVHREEIYQRIQAEKSQQSSY. 0 41.0 31.0 5.261988560249558E-19 1.0523977120499116E-18 0.0
/home/xiaowen/c_project/proteomics_cpp/testcases/data/st_no_digestion.msalign 430 836 1120 132 14 7942.023603117187 7941.976240354003 7898 gi|16767362|ref|NP_462977.1| 50S ribosomal subunit protein L31 [Salmonella typhimurium LT2] 7941.9762403540035 1 70 .MKKGIHPNYVEITATCSCGNVIKTHSTVGHDLNLDVCGKCHPFFTGKQRVVDTGGRVERFNKRFSIPGSK. 0 44.0 29.0 5.457645079900519E-19 1.0915290159801039E-18 0.0
/home/xiaowen/c_project/proteomics_cpp/testcases/data/st_no_digestion.msalign 165 552 742 104 11 6250.613088628906 6250.608088628906 7204 gi|16767012|ref|NP_462627.1| 50S ribosomal subunit protein L33 [Salmonella typhimurium LT2] 6367.619703488769 2 55 M.(A)[14.03]KGIREKIKLVSSAGTGHFYTTTKNKRTKPEKLELKKFDPVVRQHVIYKEAKIK. 1 34.0 25.0 8.9753974587111E-18 1.1101041291122295E-18 0.0
/home/xiaowen/c_project/proteomics_cpp/testcases/data/st_no_digestion.msalign 67 440 592 105 8 6311.39752790625 6311.390989499511 2302 gi|16764546|ref|NP_460161.1| 50S ribosomal subunit protein L32 [Salmonella typhimurium LT2] 6442.431486325683 2 57 M.AVQQNKPTRSKRGMRRSHDALTAVTSLSVDKTSGEKHLRHHITADGYYRGRKVIAK. 0 38.0 27.0 1.1536550237166602E-18 1.1536550237166602E-18 0.0
/home/xiaowen/c_project/proteomics_cpp/testcases/data/st_no_digestion.msalign 1312 1813 2423 158 14 9516.2456005625 9516.2456005625 8022 gi|16767424|ref|NP_463039.1| DNA-binding protein HU-alpha [Salmonella typhimurium LT2] 9515.17277355713 1 90 .MNKTQLIDVIADKAELSKTQAKAALESTLAAITESLKEGDA(V)[1.07]QLVGFGTFKVNHRAERTGRNPQTGKEIKIAAANVPAFVSGKALKDAVK. 1 49.0 34.0 8.119326511585613E-18 1.1881088934534576E-18 0.0
/home/xiaowen/c_project/proteomics_cpp/testcases/data/st_no_digestion.msalign 344 744 998 151 12 9628.751078765625 9628.722135739747 738 gi|16763764|ref|NP_459379.1| phosphate starvation-inducible protein [Salmonella typhimurium LT2] 11830.048254208985 22 106 A.TEKPLTPQQQRMTTCNQQATAQALKGDARKTYLSDCLKNSQSAPGEKSLTPQQQKMRECNVQATEQSLKGDDRSKFMSACLKKAA. 0 43.0 33.0 5.487708218717723E-20 1.207295808117899E-18 0.0
/home/xiaowen/c_project/proteomics_cpp/testcases/data/st_no_digestion.msalign 449 856 1147 134 12 8094.009473 8094.009473 7898 gi|16767362|ref|NP_462977.1| 50S ribosomal subunit protein L31 [Salmonella typhimurium LT2] 7941.9762403540035 1 70 .MKKGIHPNYVEITATCS(CGNVIKTH)[152.03]STVGHDLNLDVCGKCHPFFTGKQRVVDTGGRVERFNKRFSIPGSK. 1 44.0 32.0 4.9316987346354154E-18 1.2437073430773555E-18 0.0
/home/xiaowen/c_project/proteomics_cpp/testcases/data/st_no_digestion.msalign 412 818 1096 132 13 7941.999262906251 7941.9762403540035 7898 gi|16767362|ref|NP_462977.1| 50S ribosomal subunit protein L31 [Salmonella typhimurium LT2] 7941.9762403540035 1 70 .MKKGIHPNYVEITATCSCGNVIKTHSTVGHDLNLDVCGKCHPFFTGKQRVVDTGGRVERFNKRFSIPGSK. 0 45.0 30.0 6.393341978266999E-19 1.2786683956533998E-18 0.0
/home/xiaowen/c_project/proteomics_cpp/testcases/data/st_no_digestion.msalign 135 520 699 74 7 4461.537053507813 4461.532053507813 7204 gi|16767012|ref|NP_462627.1| 50S ribosomal subunit protein L33 [Salmonella typhimurium LT2] 6367.619703488769 2 40 M.(A)[14.03]KGIREKIKLVSSAGTGHFYTTTKNKRTKPEKLELKKFD.P 1 37.0 32.0 3.6734179450656333E-20 1.2851078614225036E-18 0.0
/home/xiaowen/c_project/proteomics_cpp/testcases/data/st_no_digestion.msalign 364 766 1027 142 11 9044.930912675782 9044.898699002686 6376 gi|16766598|ref|NP_462213.1| 50S ribosomal subunit protein L27 [Salmonella typhimurium LT2] 9175.939195828858 2 85 M.AHKKAGGSTRNGRDSEAKRLGVKRFGGEAVLAGSIIVRQRGTKFHAGTNVGCGRDHTLFAKADGKVKFEVKGPKNRKYISIVAE. 0 36.0 33.0 1.2926098092412376E-18 1.2926098092412376E-18 0.0
/home/xiaowen/c_project/proteomics_cpp/testcases/data/st_no_digestion.msalign 1180 1660 2219 61 15 12218.797509617187 12218.76931591553 6630 gi|16766724|ref|NP_462339.1| 50S ribosomal subunit protein L22 [Salmonella typhimurium LT2] 12218.769315915528 1 110 .METIAKHRHARSSAQKVRLVADLIRGKKVSQALDILTYTNKKAAVLVKKVLESAIANAEHNDGADIDDLKVTKIFVDEGPSMKRIMPRAKGRADRILKRTSHITVVVSDR. 0 22.0 19.0 6.6827836755416205E-19 1.3365567351083241E-18 0.0
/home/xiaowen/c_project/proteomics_cpp/testcases/data/st_no_digestion.msalign 1253 1742 2328 120 9 7256.045253714845 7255.987646298827 6624 gi|16766721|ref|NP_462336.1| 50S ribosomal subunit protein L29 [Salmonella typhimurium LT2] 7255.987646298828 1 63 .MKAKELREKSVEELNTELLNLLREQFNLRMQAASGQLQQSHLLKQVRRDVARVKTLLTEKAGA. 0 38.0 32.0 6.962771560171934E-19 1.3925543120343869E-18 0.0
/home/xiaowen/c_project/proteomics_cpp/testcases/data/st_no_digestion.msalign 1637 2263 3023 154 12 9262.100538593753 9262.020538593753 870 gi|16763832|ref|NP_459447.1| DNA-binding protein HU-beta [Salmonella typhimurium LT2] 9234.010030942383 1 90 .M(NKSQLI)[28.01]EKIAAGADISKAAAGRALDAIIASVTESLKEGDDVALVGFGTFAVKERAARTGRNPQTGKEITIAAAKVPSFRAGKALKDAVN. 1 45.0 36.0 1.126298472102976E-17 1.4295091799245872E-18 0.0
/home/xiaowen/c_project/proteomics_cpp/testcases/data/st_no_digestion.msalign 908 1329 1778 103 10 10060.48098686719 10060.428564267579 6342 gi|16766581|ref|NP_462196.1| 30S ribosomal subunit protein S15 [Salmonella typhimurium LT2] 10191.46906109375 2 89 M.SLSTEATAKIVSEFGRDANDTGSTDVQVALLTAQINHLQGHFAEHKKDHHSRRGLLRMVSQRRKLLDYLKRKDVARYTALIERLGLRR. 0 32.0 28.0 1.4870650472296508E-18 1.4870650472296508E-18 0.0
/home/xiaowen/c_project/proteomics_cpp/testcases/data/st_no_digestion.msalign 169 556 747 104 11 6250.609731695312 6250.609731695312 7204 gi|16767012|ref|NP_462627.1| 50S ribosomal subunit protein L33 [Salmonella typhimurium LT2] 6367.619703488769 2 55 M.(A)[14.03]KGIREKIKLVSSAGTGHFYTTTKNKRTKPEKLELKKFDPVVRQHVIYKEAKIK. 1 36.0 28.0 1.2634277970818839E-17 1.5612151268288725E-18 0.0
/home/xiaowen/c_project/proteomics_cpp/testcases/data/st_no_digestion.msalign 1070 1522 2035 118 9 7315.779019363283 7315.754019363283 1216 gi|16764006|ref|NP_459621.1| negative regulator [Salmonella typhimurium LT2] 7446.7773954443355 1 69 .(MSK)[42.01]IKGNVK(WF)[-173.03]NESKGFGFITPEDGSKDVFVHFSAIQTNGFKTLAEGQRVEFEITNGAKGPSAANVTAL. 1 48.0 28.0 7.851162304824866E-18 2.080901326190692E-18 0.0
/home/xiaowen/c_project/proteomics_cpp/testcases/data/st_no_digestion.msalign 964 1390 1859 102 7 6851.6898815976565 6851.6541196875 5446 gi|16766132|ref|NP_461747.1| carbon storage regulator [Salmonella typhimurium LT2] 6851.6541196875 1 61 .MLILTRRVGETLMIGDEVTVTVLGVKGNQVRIGVNAPKEVSVHREEIYQRIQAEKSQQSSY. 0 39.0 31.0 1.0987505277077752E-18 2.1975010554155503E-18 0.0
/home/xiaowen/c_project/proteomics_cpp/testcases/data/st_no_digestion.msalign 643 1053 1410 149 12 8970.919679390629 8970.880617337647 7206 gi|16767013|ref|NP_462628.1| 50S ribosomal subunit protein L28 [Salmonella typhimurium LT2] 9101.921114163819 2 78 M.SRVCQVTGKRPVTGNNRSHALNATKRRFLPNLHSHRFWVESEKRFVTLRVSAKGMRIIDKKGIETVLSELRARGEKY. 0 38.0 32.0 2.948600662948791E-18 2.948600662948791E-18 0.0
/home/xiaowen/c_project/proteomics_cpp/testcases/data/st_no_digestion.msalign 891 1312 1755 42 10 8323.092700585938 8323.048940854493 8154 gi|16767490|ref|NP_463105.1| putative cytoplasmic protein [Salmonella typhimurium LT2] 8454.089437680665 2 70 M.MNKDEAGGNWKQFKGKMKEQWGKLTDDDMTVIEGKRDQLVGKIQERYGYQKDQAEKEVVDWETRNNYRW. 0 25.0 23.0 1.6614681550121844E-18 3.3229363100243688E-18 0.0
/home/xiaowen/c_project/proteomics_cpp/testcases/data/st_no_digestion.msalign 48 421 567 73 8 4416.4613110625 4416.4613110625 6598 gi|16766708|ref|NP_462323.1| 50S ribosomal subunit protein X [Salmonella typhimurium LT2] 4532.514040189209 1 38 .MKVRASVKK(LCRNCK)[-116.05]IVKRDGVIRVICSAEPKHKQRQG. 1 35.0 26.0 6.859560611060985E-17 3.40470946659175E-18 0.0
/home/xiaowen/c_project/proteomics_cpp/testcases/data/st_no_digestion.msalign 79 455 612 163 9 11078.895709499997 11078.895709499997 1452 gi|16764124|ref|NP_459739.1| hypothetical protein STM0759 [Salmonella typhimurium LT2] 13436.224081235352 25 128 A.AESNAQSSNGQANSAANAGQVAPDARQNVAPNDVNN(N)[14.03]DINTNGNTNSTMQHPDGSTMNHDGMTKDEEHKNTMCKDGRCPDINKKVETGNGVNNDVNTKTDGTTQ. 1 40.0 36.0 1.4145371747912914E-19 3.660576201894681E-18 0.0
/home/xiaowen/c_project/proteomics_cpp/testcases/data/st_no_digestion.msalign 1258 1747 2335 120 9 7256.034816703126 7255.987646298827 6624 gi|16766721|ref|NP_462336.1| 50S ribosomal subunit protein L29 [Salmonella typhimurium LT2] 7255.987646298828 1 63 .MKAKELREKSVEELNTELLNLLREQFNLRMQAASGQLQQSHLLKQVRRDVARVKTLLTEKAGA. 0 40.0 31.0 1.8630583042722506E-18 3.726116608544501E-18 0.0
/home/xiaowen/c_project/proteomics_cpp/testcases/data/st_no_digestion.msalign 759 1175 1572 111 13 10277.701939542969 10277.701939542969 6632 gi|16766725|ref|NP_462340.1| 30S ribosomal subunit protein S19 [Salmonella typhimurium LT2] 10409.699133115235 2 92 M.PRSLKKGPFIDLHLLKKVEKAVESGDKKPLRTWSRRSTIFPN(M)[-.96]IGLTIAVHNGRQHVPVFVSDEMVGHKLGEFAPTRTYRGHAADKKAKKK. 1 35.0 27.0 2.3384162829913627E-17 4.0576285617624916E-18 0.0
/home/xiaowen/c_project/proteomics_cpp/testcases/data/st_no_digestion.msalign 343 743 996 153 8 9628.756501124999 9628.722135739747 738 gi|16763764|ref|NP_459379.1| phosphate starvation-inducible protein [Salmonella typhimurium LT2] 11830.048254208985 22 106 A.TEKPLTPQQQRMTTCNQQATAQALKGDARKTYLSDCLKNSQSAPGEKSLTPQQQKMRECNVQATEQSLKGDDRSKFMSACLKKAA. 0 40.0 32.0 2.0459056797505997E-19 4.500992495451319E-18 0.0
/home/xiaowen/c_project/proteomics_cpp/testcases/data/st_no_digestion.msalign 866 1286 1720 104 13 8948.881467566407 8948.881467566407 8452 gi|16767639|ref|NP_463254.1| 30S ribosomal subunit protein S18 [Salmonella typhimurium LT2] 9122.931947904053 2 75 M.(ARYFRRRKFCRFTAE)[42.01]GVQEIDYKDIATLKNYITES(GKIVPSRITGTRAKY)[-85.02]QRQLRRAIKRARYLSLLPYTDRHQ. 1 36.0 30.0 3.17955527709024E-17 5.125637341347665E-18 0.0
/home/xiaowen/c_project/proteomics_cpp/testcases/data/st_no_digestion.msalign 1667 2295 3066 101 14 10947.962508914063 10947.867208676758 6236 gi|16766528|ref|NP_462143.1| putative inner membrane protein [Salmonella typhimurium LT2] 11078.90770550293 2 101 M.SKDNTTEHLRAELKSLTDTLEEVLSSSGEKSKEELSKIRSKAERALKESRYRLGETGDVIAKQTRVAAARADDYVRENPWTGVGIGAAVGLVLGVLLTRR. 0 37.0 26.0 5.363911004435289E-18 5.363911004435289E-18 0.0
/home/xiaowen/c_project/proteomics_cpp/testcases/data/st_no_digestion.msalign 852 1272 1702 126 12 9699.305265984378 9699.24207897705 6622 gi|16766720|ref|NP_462335.1| 30S ribosomal subunit protein S17 [Salmonella typhimurium LT2] 9830.282575803223 2 84 M.TDKIRTLQGRVVSDKMEKSIVVAIERFVKHPIYGKFIKRTTKMHVHDENNECGIGDVVEIRECRPLSKTKSWTLVRVVEKAVL. 0 34.0 26.0 5.392971045684018E-18 5.392971045684018E-18 0.0
/home/xiaowen/c_project/proteomics_cpp/testcases/data/st_no_digestion.msalign 441 848 1136 134 12 8094.009473 8094.009473 7898 gi|16767362|ref|NP_462977.1| 50S ribosomal subunit protein L31 [Salmonella typhimurium LT2] 7941.9762403540035 1 70 .MKKGIHPNYVEITATCSCGNV(I)[152.03]KTHSTVGHDLNLDVCGKCHPFFTGKQRVVDTGGRVERFNKRFSIPGSK. 1 40.0 29.0 2.3646659960471253E-17 5.963366015354452E-18 0.0
/home/xiaowen/c_project/proteomics_cpp/testcases/data/st_no_digestion.msalign 173 560 752 104 10 6250.609195195313 6250.609195195313 7204 gi|16767012|ref|NP_462627.1| 50S ribosomal subunit protein L33 [Salmonella typhimurium LT2] 6367.619703488769 2 55 M.(A)[14.03]KGIREKIKLVSSAGTGHFYTTTKNKRTKPEKLELKKFDPVVRQHVIYKEAKIK. 1 34.0 27.0 4.8876963908207124E-17 6.039716363943214E-18 0.0
/home/xiaowen/c_project/proteomics_cpp/testcases/data/st_no_digestion.msalign 1265 1754 2344 120 7 7256.028250539062 7255.987646298828 6624 gi|16766721|ref|NP_462336.1| 50S ribosomal subunit protein L29 [Salmonella typhimurium LT2] 7255.987646298828 1 63 .MKAKELREKSVEELNTELLNLLREQFNLRMQAASGQLQQSHLLKQVRRDVARVKTLLTEKAGA. 0 36.0 33.0 3.1397043720742612E-18 6.2794087441485224E-18 0.0
/home/xiaowen/c_project/proteomics_cpp/testcases/data/st_no_digestion.msalign 970 1396 1867 109 8 6851.69963440625 6851.6541196875 5446 gi|16766132|ref|NP_461747.1| carbon storage regulator [Salmonella typhimurium LT2] 6851.6541196875 1 61 .MLILTRRVGETLMIGDEVTVTVLGVKGNQVRIGVNAPKEVSVHREEIYQRIQAEKSQQSSY. 0 46.0 31.0 3.3081225229256807E-18 6.616245045851361E-18 0.0
/home/xiaowen/c_project/proteomics_cpp/testcases/data/st_no_digestion.msalign 1552 2144 2864 153 14 9234.07522640625 9234.010030942383 870 gi|16763832|ref|NP_459447.1| DNA-binding protein HU-beta [Salmonella typhimurium LT2] 9234.010030942383 1 90 .MNKSQLIEKIAAGADISKAAAGRALDAIIASVTESLKEGDDVALVGFGTFAVKERAARTGRNPQTGKEITIAAAKVPSFRAGKALKDAVN. 0 54.0 31.0 3.552710913313274E-18 7.105421826626548E-18 0.0
/home/xiaowen/c_project/proteomics_cpp/testcases/data/st_no_digestion.msalign 182 569 764 104 9 6250.606888675782 6250.606888675782 7204 gi|16767012|ref|NP_462627.1| 50S ribosomal subunit protein L33 [Salmonella typhimurium LT2] 6367.619703488769 2 55 M.(A)[14.03]KGIREKIKLVSSAGTGHFYTTTKNKRTKPEKLELKKFDPVVRQHVIYKEAKIK. 1 34.0 28.0 6.43298876174866E-17 7.94559453646907E-18 0.0
/home/xiaowen/c_project/proteomics_cpp/testcases/data/st_no_digestion.msalign 1806 2557 3415 94 12 15998.60168175 15998.482710080567 802 gi|16763797|ref|NP_459412.1| riboflavin synthase beta chain [Salmonella typhimurium LT2] 15998.482710080567 1 156 .MNIIKANVAAPDARVAITIARFNQFINDSLLDGAVDALTRIGQVKDDNITVVWVPGAYELPLATEALAKSGKYDAVVALGTVIRGGTAHFEYVAGGASNGLASVAQDSGVPVAFGVLTTESIEQAIERAGTKAGNKGAEAALTALEMINVLKAIKA. 0 37.0 31.0 4.008923629713751E-18 8.017847259427502E-18 0.0
/home/xiaowen/c_project/proteomics_cpp/testcases/data/st_no_digestion.msalign 1095 1549 2071 152 15 9229.086383023436 9229.012678342284 5168 gi|16765991|ref|NP_461606.1| 30S ribosomal subunit protein S16 [Salmonella typhimurium LT2] 9229.012678342286 1 82 .MVTIRLARHGAKKRPFYQVVVTDSRNARNGRFIERVGFFNPIASEKEEGTRLDLDRIAHWVGQGATISDRVAALIKEVKKAA. 0 37.0 27.0 4.208501496066378E-18 8.417002992132756E-18 0.0
/home/xiaowen/c_project/proteomics_cpp/testcases/data/st_no_digestion.msalign 1207 1692 2262 97 10 9782.830295031252 9782.813444333497 4144 gi|16765477|ref|NP_461092.1| putative periplasmic protein [Salmonella typhimurium LT2] 11884.955469327393 20 104 A.APATTGIDQYELKSFIADFTHFKPGDTVPQMYRTDEYNIKQWKLRNLPAPDAGTHWTYMGGAYVLINDTDGKIIKAYDGEIFYHR. 0 34.0 27.0 3.4072956451706414E-19 8.858968677443668E-18 0.0
/home/xiaowen/c_project/proteomics_cpp/testcases/data/st_no_digestion.msalign 338 738 990 160 11 9628.751824003906 9628.722135739747 738 gi|16763764|ref|NP_459379.1| phosphate starvation-inducible protein [Salmonella typhimurium LT2] 11830.048254208985 22 106 A.TEKPLTPQQQRMTTCNQQATAQALKGDARKTYLSDCLKNSQSAPGEKSLTPQQQKMRECNVQATEQSLKGDDRSKFMSACLKKAA. 0 50.0 33.0 4.120293693480513E-19 9.064646125657129E-18 0.0
/home/xiaowen/c_project/proteomics_cpp/testcases/data/st_no_digestion.msalign 762 1178 1576 140 16 10278.6896940625 10278.658636289063 6632 gi|16766725|ref|NP_462340.1| 30S ribosomal subunit protein S19 [Salmonella typhimurium LT2] 10409.699133115235 2 92 M.PRSLKKGPFIDLHLLKKVEKAVESGDKKPLRTWSRRSTIFPNMIGLTIAVHNGRQHVPVFVSDEMVGHKLGEFAPTRTYRGHAADKKAKKK. 0 36.0 26.0 9.103656331045775E-18 9.103656331045775E-18 0.0
/home/xiaowen/c_project/proteomics_cpp/testcases/data/st_no_digestion.msalign 1718 2373 3170 122 7 11231.840563757813 11231.830563757814 6542 gi|16766680|ref|NP_462295.1| factor-for-inversion stimulation protein [Salmonella typhimurium LT2] 11232.765684323731 1 98 .MFEQRVNSDVLTVSTVNSQDQVTQKPLRDSVKQALKNYFAQ(LN)[-.94]GQDVNDLYELVLAEVEQPLLDMVMQYTRGNQTRAALMMGINRGTLRKKLKKYGMN. 1 38.0 33.0 4.483644782906839E-17 9.734484294329543E-18 0.0
/home/xiaowen/c_project/proteomics_cpp/testcases/data/st_no_digestion.msalign 1412 1954 2611 151 8 9113.770784875 9113.737188535157 4692 gi|16765751|ref|NP_461366.1| phosphohistidinoprotein-hexose phosphotransferase [Salmonella typhimurium LT2] 9113.737188535157 1 85 .MFQQEVTITAPNGLHTRPAAQFVKEAKGFTSEITVTSNGKSASAKSLFKLQTLGLTQGTVVTISAEGEDEQKAVEHLVKLMAELE. 0 33.0 31.0 5.355535342661386E-18 1.0711070685322772E-17 0.0
/home/xiaowen/c_project/proteomics_cpp/testcases/data/st_no_digestion.msalign 1618 2244 2998 144 8 9191.709242437499 9191.709242437499 7882 gi|16767354|ref|NP_462969.1| putative cytoplasmic protein [Salmonella typhimurium LT2] 9306.687360959473 2 79 M.SL(E)[16.06]VFEKLEAKVQQAIDTITLLQMEIEELKEKNNSLTQEVQSAQHQREELERENNSLKEQQSGWQERLQALLGRMEEV. 1 51.0 40.0 3.914888890404005E-17 1.1415376951458408E-17 0.0
/home/xiaowen/c_project/proteomics_cpp/testcases/data/st_no_digestion.msalign 1261 1750 2339 140 12 10098.453128203126 10098.433128203127 7232 gi|16767026|ref|NP_462641.1| RNA polymerase omega subunit [Salmonella typhimurium LT2] 10230.389227109375 2 91 M.ARVTVQDAVEKIGNRFDLVLVAA(RRARQMQVGGKD)[-.92]PLVPEENDKTTVIALREIEEGLINNQILDVRERQEQQEQEAAELQAVTAIAEGRR. 1 35.0 30.0 6.768282101384758E-17 1.1644707037081247E-17 0.0
/home/xiaowen/c_project/proteomics_cpp/testcases/data/st_no_digestion.msalign 909 1330 1779 108 10 10060.48098686719 10060.428564267579 6342 gi|16766581|ref|NP_462196.1| 30S ribosomal subunit protein S15 [Salmonella typhimurium LT2] 10191.46906109375 2 89 M.SLSTEATAKIVSEFGRDANDTGSTDVQVALLTAQINHLQGHFAEHKKDHHSRRGLLRMVSQRRKLLDYLKRKDVARYTALIERLGLRR. 0 31.0 28.0 1.2529422410921068E-17 1.2529422410921068E-17 0.0
/home/xiaowen/c_project/proteomics_cpp/testcases/data/st_no_digestion.msalign 1322 1823 2436 158 15 9515.220685402346 9515.17277355713 8022 gi|16767424|ref|NP_463039.1| DNA-binding protein HU-alpha [Salmonella typhimurium LT2] 9515.17277355713 1 90 .MNKTQLIDVIADKAELSKTQAKAALESTLAAITESLKEGDAVQLVGFGTFKVNHRAERTGRNPQTGKEIKIAAANVPAFVSGKALKDAVK. 0 48.0 31.0 6.65373371634392E-18 1.330746743268784E-17 0.0
/home/xiaowen/c_project/proteomics_cpp/testcases/data/st_no_digestion.msalign 440 847 1135 123 13 8094.010253640625 8094.010253640625 7898 gi|16767362|ref|NP_462977.1| 50S ribosomal subunit protein L31 [Salmonella typhimurium LT2] 7941.9762403540035 1 70 .MKKGIHPNYVEITAT(CSC)[152.03]GNVIKTHSTVGHDLNLDVCGKCHPFFTGKQRVVDTGGRVERFNKRFSIPGSK. 1 34.0 26.0 5.3568028612239986E-17 1.350912821809785E-17 0.0
/home/xiaowen/c_project/proteomics_cpp/testcases/data/st_no_digestion.msalign 60 433 583 104 11 6311.403104691406 6311.390989499511 2302 gi|16764546|ref|NP_460161.1| 50S ribosomal subunit protein L32 [Salmonella typhimurium LT2] 6442.431486325683 2 57 M.AVQQNKPTRSKRGMRRSHDALTAVTSLSVDKTSGEKHLRHHITADGYYRGRKVIAK. 0 41.0 26.0 1.3824758451489046E-17 1.3824758451489046E-17 0.0
/home/xiaowen/c_project/proteomics_cpp/testcases/data/st_no_digestion.msalign 1291 1784 2384 114 10 7257.010084648438 7257.010084648438 6624 gi|16766721|ref|NP_462336.1| 50S ribosomal subunit protein L29 [Salmonella typhimurium LT2] 7255.987646298828 1 63 .MKAKELREKSVEELNTELL(N)[1.02]LLREQFNLRMQAASGQLQQSHLLKQVRRDVARVKTLLTEKAGA. 1 39.0 31.0 1.0485041391074035E-16 1.394855844322691E-17 0.0
/home/xiaowen/c_project/proteomics_cpp/testcases/data/st_no_digestion.msalign 1205 1690 2259 96 11 9782.907552722658 9782.813444333497 4144 gi|16765477|ref|NP_461092.1| putative periplasmic protein [Salmonella typhimurium LT2] 11884.955469327393 20 104 A.APATTGIDQYELKSFIADFTHFKPGDTVPQMYRTDEYNIKQWKLRNLPAPDAGTHWTYMGGAYVLINDTDGKIIKAYDGEIFYHR. 0 34.0 26.0 4.623393183237358E-19 1.4794858186359545E-17 0.0
/home/xiaowen/c_project/proteomics_cpp/testcases/data/st_no_digestion.msalign 1604 2222 2968 81 12 8553.371180406251 8553.319486813964 2166 gi|16764476|ref|NP_460091.1| putative cytoplasmic protein [Salmonella typhimurium LT2] 8684.359983640137 2 75 M.PTQEAKAHRVGEWASLRNTSPEIAEAIFEVAHYDEKLAEKIWEEGSDEVLIKAFEKTDKDSLFWGEQIIERKNV. 0 33.0 27.0 1.6241382729448124E-17 1.6241382729448124E-17 0.0
/home/xiaowen/c_project/proteomics_cpp/testcases/data/st_no_digestion.msalign 373 775 1039 146 11 9044.906071367188 9044.898699002686 6376 gi|16766598|ref|NP_462213.1| 50S ribosomal subunit protein L27 [Salmonella typhimurium LT2] 9175.939195828858 2 85 M.AHKKAGGSTRNGRDSEAKRLGVKRFGGEAVLAGSIIVRQRGTKFHAGTNVGCGRDHTLFAKADGKVKFEVKGPKNRKYISIVAE. 0 39.0 31.0 1.779278866036086E-17 1.779278866036086E-17 0.0
/home/xiaowen/c_project/proteomics_cpp/testcases/data/st_no_digestion.msalign 131 516 694 74 7 4461.536626261719 4461.536626261719 7204 gi|16767012|ref|NP_462627.1| 50S ribosomal subunit protein L33 [Salmonella typhimurium LT2] 6367.619703488769 2 40 M.(A)[14.03]KGIREKIKLVSSAGTGHFYTTTKNKRTKPEKLELKKFD.P 1 39.0 32.0 5.70163688591132E-19 1.9946596043892967E-17 0.0
/home/xiaowen/c_project/proteomics_cpp/testcases/data/st_no_digestion.msalign 1098 1552 2075 153 16 9229.085576749998 9229.012678342286 5168 gi|16765991|ref|NP_461606.1| 30S ribosomal subunit protein S16 [Salmonella typhimurium LT2] 9229.012678342286 1 82 .MVTIRLARHGAKKRPFYQVVVTDSRNARNGRFIERVGFFNPIASEKEEGTRLDLDRIAHWVGQGATISDRVAALIKEVKKAA. 0 37.0 27.0 1.1726569981074147E-17 2.3453139962148293E-17 0.0
/home/xiaowen/c_project/proteomics_cpp/testcases/data/st_no_digestion.msalign 1105 1564 2091 148 13 9229.039960902344 9229.012678342286 5168 gi|16765991|ref|NP_461606.1| 30S ribosomal subunit protein S16 [Salmonella typhimurium LT2] 9229.012678342286 1 82 .MVTIRLARHGAKKRPFYQVVVTDSRNARNGRFIERVGFFNPIASEKEEGTRLDLDRIAHWVGQGATISDRVAALIKEVKKAA. 0 36.0 29.0 1.175855259478389E-17 2.351710518956778E-17 0.0
/home/xiaowen/c_project/proteomics_cpp/testcases/data/st_no_digestion.msalign 1283 1776 2374 115 9 7256.048549613282 7255.987646298827 6624 gi|16766721|ref|NP_462336.1| 50S ribosomal subunit protein L29 [Salmonella typhimurium LT2] 7255.987646298828 1 63 .MKAKELREKSVEELNTELLNLLREQFNLRMQAASGQLQQSHLLKQVRRDVARVKTLLTEKAGA. 0 39.0 31.0 1.2315569851374842E-17 2.4631139702749683E-17 0.0
/home/xiaowen/c_project/proteomics_cpp/testcases/data/st_no_digestion.msalign 1599 2215 2959 47 10 8553.386220687502 8553.319486813965 2166 gi|16764476|ref|NP_460091.1| putative cytoplasmic protein [Salmonella typhimurium LT2] 8684.359983640137 2 75 M.PTQEAKAHRVGEWASLRNTSPEIAEAIFEVAHYDEKLAEKIWEEGSDEVLIKAFEKTDKDSLFWGEQIIERKNV. 0 26.0 23.0 2.814005474739997E-17 2.814005474739997E-17 0.0
/home/xiaowen/c_project/proteomics_cpp/testcases/data/st_no_digestion.msalign 739 1155 1546 128 13 9518.345466894534 9518.289663510743 86 gi|16763433|ref|NP_459048.1| 30S ribosomal subunit protein S20 [Salmonella typhimurium LT2] 9649.330160336915 2 87 M.ANIKSAKKRAVQSEKARKHNASRRSMMRTFIKKVYAAIEAGDKAAALKAFNEMQPIVDRQAAKGLIHKNKAARHKANLTAQINKLA. 0 33.0 26.0 2.8398601752032604E-17 2.8398601752032604E-17 0.0
/home/xiaowen/c_project/proteomics_cpp/testcases/data/st_no_digestion.msalign 1248 1737 2322 116 10 7256.047560234376 7255.987646298828 6624 gi|16766721|ref|NP_462336.1| 50S ribosomal subunit protein L29 [Salmonella typhimurium LT2] 7255.987646298828 1 63 .MKAKELREKSVEELNTELLNLLREQFNLRMQAASGQLQQSHLLKQVRRDVARVKTLLTEKAGA. 0 37.0 29.0 1.4406106098680262E-17 2.8812212197360523E-17 0.0
/home/xiaowen/c_project/proteomics_cpp/testcases/data/st_no_digestion.msalign 1317 1818 2430 158 15 9514.238324562502 9514.238324562502 8022 gi|16767424|ref|NP_463039.1| DNA-binding protein HU-alpha [Salmonella typhimurium LT2] 9515.17277355713 1 90 .MNKTQLIDVIADKAELSKTQAKAALESTLAAITESLKEGDAVQLVGF(GTFKVNHRAERTGRNPQTGKEIKIAAA)[-.93]NVPAFVSGKALKDAVK. 1 48.0 34.0 2.1517354298223854E-16 2.980759036983391E-17 0.0
/home/xiaowen/c_project/proteomics_cpp/testcases/data/st_no_digestion.msalign 171 558 750 104 12 6250.615273078125 6250.610273078126 7204 gi|16767012|ref|NP_462627.1| 50S ribosomal subunit protein L33 [Salmonella typhimurium LT2] 6367.619703488769 2 55 M.(AKGIREKIKL)[14.03]VSSAGTGHFYTTTKNKRTKPEKLELKKFDPVVRQHVIYKEAKIK. 1 29.0 23.0 2.6864932882034515E-16 3.262698081456988E-17 0.0
/home/xiaowen/c_project/proteomics_cpp/testcases/data/st_no_digestion.msalign 893 1314 1758 114 11 8323.102392359375 8323.048940854493 8154 gi|16767490|ref|NP_463105.1| putative cytoplasmic protein [Salmonella typhimurium LT2] 8454.089437680665 2 70 M.MNKDEAGGNWKQFKGKMKEQWGKLTDDDMTVIEGKRDQLVGKIQERYGYQKDQAEKEVVDWETRNNYRW. 0 28.0 25.0 1.663533090303614E-17 3.327066180607228E-17 0.0
/home/xiaowen/c_project/proteomics_cpp/testcases/data/st_no_digestion.msalign 1730 2387 3188 145 15 11782.214643839843 11782.113416867676 7558 gi|16767191|ref|NP_462806.1| thioredoxin 1 [Salmonella typhimurium LT2] 11913.153913693848 2 109 M.SDKIIHLTDDSFDTDVLKADGAILVDFWAEWCGPCKMIAPILDEIADEYQGKLTVAKLNIDQNPGTAPKYGIRGIPTLLLFKNGEVAATKVGALSKGQLKEFLDANLA. 0 38.0 28.0 3.4901001395644045E-17 3.4901001395644045E-17 0.0
/home/xiaowen/c_project/proteomics_cpp/testcases/data/st_no_digestion.msalign 530 937 1255 75 10 7079.475938960936 7079.475938960936 748 gi|16763769|ref|NP_459384.1| putative cytoplasmic protein [Salmonella typhimurium LT2] 7222.519148068847 2 63 M.PTRPPYPREAYIVTIEKGTPGQTVTWYQLRADHPKPD(SLISEH)[-12.00]PTAEEAMDAKNRYEDPDKS. 1 29.0 24.0 6.101687677532251E-16 3.5567552191577876E-17 0.0
/home/xiaowen/c_project/proteomics_cpp/testcases/data/st_no_digestion.msalign 1559 2152 2875 153 15 9233.08906857031 9233.08906857031 870 gi|16763832|ref|NP_459447.1| DNA-binding protein HU-beta [Salmonella typhimurium LT2] 9234.010030942383 1 90 .MNKSQLIEKIAAGADISKAAAGRALDAIIASVTESLKEGDD(V)[-.92]ALVGFGTFAVKERAARTGRNPQTGKEITIAAAKVPSFRAGKALKDAVN. 1 58.0 33.0 2.5339771640073185E-16 3.804990254934466E-17 0.0
/home/xiaowen/c_project/proteomics_cpp/testcases/data/st_no_digestion.msalign 1668 2296 3067 89 14 10947.962508914063 10947.867208676758 6236 gi|16766528|ref|NP_462143.1| putative inner membrane protein [Salmonella typhimurium LT2] 11078.90770550293 2 101 M.SKDNTTEHLRAELKSLTDTLEEVLSSSGEKSKEELSKIRSKAERALKESRYRLGETGDVIAKQTRVAAARADDYVRENPWTGVGIGAAVGLVLGVLLTRR. 0 31.0 23.0 3.8085950368329186E-17 3.8085950368329186E-17 0.0
/home/xiaowen/c_project/proteomics_cpp/testcases/data/st_no_digestion.msalign 452 859 1151 121 9 8094.03148410547 8094.011484105469 7898 gi|16767362|ref|NP_462977.1| 50S ribosomal subunit protein L31 [Salmonella typhimurium LT2] 7941.9762403540035 1 70 .MKKGIHPNYVEITATC(SC)[152.04]GNVIKTHSTVGHDLNLDVCGKCHPFFTGKQRVVDTGGRVERFNKRFSIPGSK. 1 34.0 30.0 1.6634718338985686E-16 4.195049710340731E-17 0.0
/home/xiaowen/c_project/proteomics_cpp/testcases/data/st_no_digestion.msalign 168 555 746 104 10 6250.606143437501 6250.606143437501 7204 gi|16767012|ref|NP_462627.1| 50S ribosomal subunit protein L33 [Salmonella typhimurium LT2] 6367.619703488769 2 55 M.(A)[14.03]KGIREKIKLVSSAGTGHFYTTTKNKRTKPEKLELKKFDPVVRQHVIYKEAKIK. 1 33.0 26.0 3.710465741381641E-16 4.580821902940297E-17 0.0
/home/xiaowen/c_project/proteomics_cpp/testcases/data/st_no_digestion.msalign 1250 1739 2324 120 8 7256.04477825 7255.987646298828 6624 gi|16766721|ref|NP_462336.1| 50S ribosomal subunit protein L29 [Salmonella typhimurium LT2] 7255.987646298828 1 63 .MKAKELREKSVEELNTELLNLLREQFNLRMQAASGQLQQSHLLKQVRRDVARVKTLLTEKAGA. 0 37.0 32.0 2.3672338806990235E-17 4.734467761398047E-17 0.0
/home/xiaowen/c_project/proteomics_cpp/testcases/data/st_no_digestion.msalign 1259 1748 2336 119 12 7256.040820734377 7255.987646298827 6624 gi|16766721|ref|NP_462336.1| 50S ribosomal subunit protein L29 [Salmonella typhimurium LT2] 7255.987646298828 1 63 .MKAKELREKSVEELNTELLNLLREQFNLRMQAASGQLQQSHLLKQVRRDVARVKTLLTEKAGA. 0 45.0 28.0 2.3915138790935397E-17 4.7830277581870793E-17 0.0
/home/xiaowen/c_project/proteomics_cpp/testcases/data/st_no_digestion.msalign 409 815 1092 132 12 7958.00799475 7957.98299475 7898 gi|16767362|ref|NP_462977.1| 50S ribosomal subunit protein L31 [Salmonella typhimurium LT2] 7941.9762403540035 1 70 .(MKKGIH)[16.01]PNYVEITATCSCGNVIKTHSTVGHDLNLDVCGKCHPFFTGKQRVVDTGGRVERFNKRFSIPGSK. 1 43.0 28.0 1.9858653664689172E-16 4.9006622303284515E-17 0.0
/home/xiaowen/c_project/proteomics_cpp/testcases/data/st_no_digestion.msalign 853 1273 1703 81 14 8948.899643226561 8948.874643226562 8452 gi|16767639|ref|NP_463254.1| 30S ribosomal subunit protein S18 [Salmonella typhimurium LT2] 9122.931947904053 2 75 M.(ARYFRRRKFCRFTAEGV)[42.01]QEIDYKDIATLKNYITESGK(I)[-85.03]VPSRITGTRAKYQRQLRRAIKRARYLSLLPYTDRHQ. 1 29.0 23.0 3.0437356517731937E-16 4.90668780830165E-17 0.0
/home/xiaowen/c_project/proteomics_cpp/testcases/data/st_no_digestion.msalign 1857 2652 3542 52 9 12290.532072585936 12290.532072585936 7986 gi|16767406|ref|NP_463021.1| 50S ribosomal subunit protein L7/L12 [Salmonella typhimurium LT2] 12291.470907407227 1 121 .MSITKDQIIEA(VSA)[-.94]MSVMDVVELISAMEEKFGVSAAAAVAVAAGPAEAAEEKTEFDVILKAAGANKVAVIKAVRGATGLGLKEAKDLVESAPAALKEGVSKDDAEALKKSLEEAGAEVEVK. 1 25.0 23.0 1.8473886219985016E-16 5.306933846806621E-17 0.0
/home/xiaowen/c_project/proteomics_cpp/testcases/data/st_no_digestion.msalign 137 522 702 74 8 4461.53990934375 4461.53490934375 7204 gi|16767012|ref|NP_462627.1| 50S ribosomal subunit protein L33 [Salmonella typhimurium LT2] 6367.619703488769 2 40 M.(A)[14.03]KGIREKIKLVSSAGTGHFYTTTKNKRTKPEKLELKKFD.P 1 34.0 26.0 1.752936498069632E-18 5.980701345681457E-17 0.0
/home/xiaowen/c_project/proteomics_cpp/testcases/data/st_no_digestion.msalign 1181 1661 2220 82 13 12218.8160899375 12218.769315915528 6630 gi|16766724|ref|NP_462339.1| 50S ribosomal subunit protein L22 [Salmonella typhimurium LT2] 12218.769315915528 1 110 .METIAKHRHARSSAQKVRLVADLIRGKKVSQALDILTYTNKKAAVLVKKVLESAIANAEHNDGADIDDLKVTKIFVDEGPSMKRIMPRAKGRADRILKRTSHITVVVSDR. 0 23.0 21.0 3.0259987672940984E-17 6.051997534588197E-17 0.0
/home/xiaowen/c_project/proteomics_cpp/testcases/data/st_no_digestion.msalign 1270 1761 2354 125 10 10098.435697781253 10098.415697781253 7232 gi|16767026|ref|NP_462641.1| RNA polymerase omega subunit [Salmonella typhimurium LT2] 10230.389227109375 2 91 M.ARVTVQDAVEKIGNRFDLVLVAARRARQMQVGGKDP(L)[-.93]VPEENDKTTVIALREIEEGLINNQILDVRERQEQQEQEAAELQAVTAIAEGRR. 1 34.0 31.0 3.600482632465923E-16 6.189196358774723E-17 0.0
/home/xiaowen/c_project/proteomics_cpp/testcases/data/st_no_digestion.msalign 1913 2785 3719 63 9 12201.453828515625 12201.453828515625 7986 gi|16767406|ref|NP_463021.1| 50S ribosomal subunit protein L7/L12 [Salmonella typhimurium LT2] 12291.470907407227 2 121 M.(SITKDQII)[42.01]EAVSAMSVMDVVELISAMEEKFGVSAAAAVAVAA(G)[-.99]PAEAAEEKTEFDVILKAAGANKVAVIKAVRGATGLGLKEAKDLVESAPAALKEGVSKDDAEALKKSLEEAGAEVEVK. 1 29.0 26.0 2.542795188104816E-16 6.572965466044286E-17 0.0
/home/xiaowen/c_project/proteomics_cpp/testcases/data/st_no_digestion.msalign 1937 2867 3828 38 9 9972.992058046875 9972.923879819336 4604 gi|16765707|ref|NP_461322.1| putative cytoplasmic protein [Salmonella typhimurium LT2] 9972.923879819336 1 91 .MIAEFESRILALIDDMVEHASDDELFASGYLRGHLTLAIAELESGDDHSVEAVYANVSQSLEKAIGAGELSPRDQALVKAMWDNLFDKAKQ. 0 21.0 21.0 3.346866001919926E-17 6.693732003839852E-17 0.0
/home/xiaowen/c_project/proteomics_cpp/testcases/data/st_no_digestion.msalign 1122 1589 2124 153 15 9229.066241421873 9229.012678342284 5168 gi|16765991|ref|NP_461606.1| 30S ribosomal subunit protein S16 [Salmonella typhimurium LT2] 9229.012678342286 1 82 .MVTIRLARHGAKKRPFYQVVVTDSRNARNGRFIERVGFFNPIASEKEEGTRLDLDRIAHWVGQGATISDRVAALIKEVKKAA. 0 35.0 28.0 3.540132012834045E-17 7.08026402566809E-17 0.0
/home/xiaowen/c_project/proteomics_cpp/testcases/data/st_no_digestion.msalign 484 891 1194 94 10 7825.924438218752 7825.924438218752 7898 gi|16767362|ref|NP_462977.1| 50S ribosomal subunit protein L31 [Salmonella typhimurium LT2] 7941.9762403540035 1 70 .MKKGIHPNYVEITATCSCGNVIKTHSTVGHDLNLD(VCGKC)[-116.05]HPFFTGKQRVVDTGGRVERFNKRFSIPGSK. 1 37.0 29.0 3.3550930637826763E-16 7.08156309115858E-17 0.0
/home/xiaowen/c_project/proteomics_cpp/testcases/data/st_no_digestion.msalign 1311 1812 2422 59 13 9515.228767675784 9515.172773557128 8022 gi|16767424|ref|NP_463039.1| DNA-binding protein HU-alpha [Salmonella typhimurium LT2] 9515.17277355713 1 90 .MNKTQLIDVIADKAELSKTQAKAALESTLAAITESLKEGDAVQLVGFGTFKVNHRAERTGRNPQTGKEIKIAAANVPAFVSGKALKDAVK. 0 26.0 23.0 3.6377412108601056E-17 7.275482421720211E-17 0.0
/home/xiaowen/c_project/proteomics_cpp/testcases/data/st_no_digestion.msalign 1648 2275 3039 81 13 11211.828890179688 11211.739576535645 4466 gi|16765638|ref|NP_461253.1| putative inner membrane protein [Salmonella typhimurium LT2] 11629.921674924317 4 103 M.SYQFGESRVDDDLTLLSETLEEVLRSSGDPADQKYIELKARAEQALEEVKNRVSHASDSYYYRAKQAVYKADDYVHEKPWQGIGVGAAVGLVLGLLLARR. 0 34.0 25.0 1.914591054225203E-18 7.466905111478292E-17 0.0
/home/xiaowen/c_project/proteomics_cpp/testcases/data/st_no_digestion.msalign 1742 2405 3212 95 14 11782.220882242187 11782.113416867676 7558 gi|16767191|ref|NP_462806.1| thioredoxin 1 [Salmonella typhimurium LT2] 11913.153913693848 2 109 M.SDKIIHLTDDSFDTDVLKADGAILVDFWAEWCGPCKMIAPILDEIADEYQGKLTVAKLNIDQNPGTAPKYGIRGIPTLLLFKNGEVAATKVGALSKGQLKEFLDANLA. 0 39.0 29.0 7.601651167691631E-17 7.601651167691631E-17 0.0
/home/xiaowen/c_project/proteomics_cpp/testcases/data/st_no_digestion.msalign 24 396 534 75 10 4532.531088648438 4532.514040189209 6598 gi|16766708|ref|NP_462323.1| 50S ribosomal subunit protein X [Salmonella typhimurium LT2] 4532.514040189209 1 38 .MKVRASVKKLCRNCKIVKRDGVIRVICSAEPKHKQRQG. 0 29.0 19.0 4.2160516586599463E-17 8.432103317319893E-17 0.0
/home/xiaowen/c_project/proteomics_cpp/testcases/data/st_no_digestion.msalign 868 1288 1723 147 11 8948.883690464843 8948.883690464843 8452 gi|16767639|ref|NP_463254.1| 30S ribosomal subunit protein S18 [Salmonella typhimurium LT2] 9122.931947904053 2 75 M.(ARYFR)[42.01]RRKFCRFTAEGVQEIDYKDIATLKNYITESGKIV(PSRITGTRAKY)[-85.02]QRQLRRAIKRARYLSLLPYTDRHQ. 1 39.0 31.0 5.373893073356568E-16 8.549056498046361E-17 0.0
/home/xiaowen/c_project/proteomics_cpp/testcases/data/st_no_digestion.msalign 1093 1547 2068 150 12 9229.081477624999 9229.012678342286 5168 gi|16765991|ref|NP_461606.1| 30S ribosomal subunit protein S16 [Salmonella typhimurium LT2] 9229.012678342286 1 82 .MVTIRLARHGAKKRPFYQVVVTDSRNARNGRFIERVGFFNPIASEKEEGTRLDLDRIAHWVGQGATISDRVAALIKEVKKAA. 0 37.0 28.0 4.320954301666009E-17 8.641908603332018E-17 0.0
/home/xiaowen/c_project/proteomics_cpp/testcases/data/st_no_digestion.msalign 1687 2319 3098 55 16 17715.585744750002 17715.418695645752 7984 gi|16767405|ref|NP_463020.1| 50S ribosomal subunit protein L10 [Salmonella typhimurium LT2] 17846.459192471924 2 165 M.ALNLQDKQAIVAEVSEVAKGALSAVVADSRGVTVDKMTELRKAGREAGVYMRVVRNTLLRRVVEGTQFECLKDTFVGPTLIAYSMEHPGAAARLFKEFAKANAKFEVKAAAFEGELIPASQIDRLATLPTYEEAIARLMATMKEASAGKLVRTLAAVRDAKEAA. 0 23.0 22.0 8.978104954337262E-17 8.978104954337262E-17 0.0
/home/xiaowen/c_project/proteomics_cpp/testcases/data/st_no_digestion.msalign 133 518 696 74 7 4461.536626261719 4461.536626261719 7204 gi|16767012|ref|NP_462627.1| 50S ribosomal subunit protein L33 [Salmonella typhimurium LT2] 6367.619703488769 2 40 M.(A)[14.03]KGIREKIKLVSSAGTGHFYTTTKNKRTKPEKLELKKFD.P 1 34.0 28.0 2.8388154717555906E-18 9.931306849473563E-17 0.0
/home/xiaowen/c_project/proteomics_cpp/testcases/data/st_no_digestion.msalign 1506 2086 2787 38 14 10600.363719960937 10600.277429776612 5878 gi|16766348|ref|NP_461963.1| putative cytoplasmic protein [Salmonella typhimurium LT2] 10600.277429776612 1 88 .MDIHNKARIHWACRRGMRELDISIMPFFEHEYDSLSDEEKRIFVRLLQSDDPDLFNWLMNHGKPADAELEQMVRLIQTRNRERGPVAI. 0 20.0 16.0 5.3299120506839375E-17 1.0659824101367875E-16 0.0
/home/xiaowen/c_project/proteomics_cpp/testcases/data/st_no_digestion.msalign 1175 1655 2212 128 17 12218.855894628909 12218.769315915528 6630 gi|16766724|ref|NP_462339.1| 50S ribosomal subunit protein L22 [Salmonella typhimurium LT2] 12218.769315915528 1 110 .METIAKHRHARSSAQKVRLVADLIRGKKVSQALDILTYTNKKAAVLVKKVLESAIANAEHNDGADIDDLKVTKIFVDEGPSMKRIMPRAKGRADRILKRTSHITVVVSDR. 0 31.0 24.0 5.819744229127929E-17 1.1639488458255859E-16 0.0
/home/xiaowen/c_project/proteomics_cpp/testcases/data/st_no_digestion.msalign 138 523 703 74 6 4461.5390804843755 4461.529080484375 7204 gi|16767012|ref|NP_462627.1| 50S ribosomal subunit protein L33 [Salmonella typhimurium LT2] 6367.619703488769 2 40 M.(AK)[14.02]GIREKIKLVSSAGTGHFYTTTKNKRTKPEKLELKKFD.P 1 38.0 31.0 3.7647779771607744E-18 1.3182758981867594E-16 0.0
/home/xiaowen/c_project/proteomics_cpp/testcases/data/st_no_digestion.msalign 311 711 954 140 15 8420.766552699219 8420.707170682374 6198 gi|16766509|ref|NP_462124.1| 30S ribosomal subunit protein S21 [Salmonella typhimurium LT2] 8551.747667508545 2 71 M.PVIKVRENEPFDVALRRFKRSCEKAGVLAEVRRREFYEKPTTERKRAKASAVKRHAKKLARENARRTRLY. 0 34.0 24.0 1.375594229915778E-16 1.375594229915778E-16 0.0
/home/xiaowen/c_project/proteomics_cpp/testcases/data/st_no_digestion.msalign 1419 1961 2620 151 8 9113.805941125 9113.737188535157 4692 gi|16765751|ref|NP_461366.1| phosphohistidinoprotein-hexose phosphotransferase [Salmonella typhimurium LT2] 9113.737188535157 1 85 .MFQQEVTITAPNGLHTRPAAQFVKEAKGFTSEITVTSNGKSASAKSLFKLQTLGLTQGTVVTISAEGEDEQKAVEHLVKLMAELE. 0 33.0 31.0 7.003264603610989E-17 1.4006529207221977E-16 0.0
/home/xiaowen/c_project/proteomics_cpp/testcases/data/st_no_digestion.msalign 1321 1822 2435 143 11 9514.206637546878 9514.181637546877 8022 gi|16767424|ref|NP_463039.1| DNA-binding protein HU-alpha [Salmonella typhimurium LT2] 9515.17277355713 1 90 .(MN)[-.99]KTQLIDVIADKAELSKTQAKAALESTLAAITESLKEGDAVQLVGFGTFKVNHRAERTGRNPQTGKEIKIAAANVPAFVSGKALKDAVK. 1 34.0 29.0 1.0195014399332894E-15 1.427615347121337E-16 0.0
/home/xiaowen/c_project/proteomics_cpp/testcases/data/st_no_digestion.msalign 367 769 1031 150 10 9043.970232132815 9043.955232132814 6376 gi|16766598|ref|NP_462213.1| 50S ribosomal subunit protein L27 [Salmonella typhimurium LT2] 9175.939195828858 2 85 M.AHKKAGGSTRNGRDSEAKRLGVK(R)[-.94]FGGEAVLAGSIIVRQRGTKFHAGTNVGCGRDHTLFAKADGKVKFEVKGPKNRKYISIVAE. 1 39.0 32.0 1.4085205549256944E-15 1.6479947991817997E-16 0.0
/home/xiaowen/c_project/proteomics_cpp/testcases/data/st_no_digestion.msalign 206 603 810 104 11 6250.613760015624 6250.608760015625 7204 gi|16767012|ref|NP_462627.1| 50S ribosomal subunit protein L33 [Salmonella typhimurium LT2] 6367.619703488769 2 55 M.(A)[14.03]KGIREKIKLVSSAGTGHFYTTTKNKRTKPEKLELKKFDPVVRQHVIYKEAKIK. 1 28.0 21.0 1.442393109502163E-15 1.783995142306844E-16 0.0
/home/xiaowen/c_project/proteomics_cpp/testcases/data/st_no_digestion.msalign 132 517 695 74 8 4461.5355148125 4461.5355148125 7204 gi|16767012|ref|NP_462627.1| 50S ribosomal subunit protein L33 [Salmonella typhimurium LT2] 6367.619703488769 2 40 M.(A)[14.03]KGIREKIKLVSSAGTGHFYTTTKNKRTKPEKLELKKFD.P 1 36.0 26.0 5.2602679429209714E-18 1.7930652466304527E-16 0.0
/home/xiaowen/c_project/proteomics_cpp/testcases/data/st_no_digestion.msalign 1249 1738 2323 120 8 7256.04477825 7255.987646298828 6624 gi|16766721|ref|NP_462336.1| 50S ribosomal subunit protein L29 [Salmonella typhimurium LT2] 7255.987646298828 1 63 .MKAKELREKSVEELNTELLNLLREQFNLRMQAASGQLQQSHLLKQVRRDVARVKTLLTEKAGA. 0 37.0 31.0 9.303716913902228E-17 1.8607433827804455E-16 0.0
/home/xiaowen/c_project/proteomics_cpp/testcases/data/st_no_digestion.msalign 1239 1728 2310 59 9 6478.506700425782 6478.460607724609 3498 gi|16765150|ref|NP_460765.1| putative cytoplasmic protein [Salmonella typhimurium LT2] 6478.460607724609 1 57 .MNSEELTHKAEEEIAALISKKVAELRKKTGQEVSEIEFAPRETMKGLEGYHVKIKLL. 0 23.0 20.0 9.774280589722426E-17 1.9548561179444852E-16 0.0
/home/xiaowen/c_project/proteomics_cpp/testcases/data/st_no_digestion.msalign 1089 1543 2063 152 12 9229.087336999999 9229.012678342286 5168 gi|16765991|ref|NP_461606.1| 30S ribosomal subunit protein S16 [Salmonella typhimurium LT2] 9229.012678342286 1 82 .MVTIRLARHGAKKRPFYQVVVTDSRNARNGRFIERVGFFNPIASEKEEGTRLDLDRIAHWVGQGATISDRVAALIKEVKKAA. 0 34.0 28.0 9.821566949665512E-17 1.9643133899331024E-16 0.0
/home/xiaowen/c_project/proteomics_cpp/testcases/data/st_no_digestion.msalign 408 814 1091 132 13 7958.00645605469 7957.98145605469 7898 gi|16767362|ref|NP_462977.1| 50S ribosomal subunit protein L31 [Salmonella typhimurium LT2] 7941.9762403540035 1 70 .(MKKGIH)[16.01]PNYVEITATCSCGNVIKTHSTVGHDLNLDVCGKCHPFFTGKQRVVDTGGRVERFNKRFSIPGSK. 1 40.0 29.0 8.067926511937486E-16 2.0188371768601622E-16 0.0
/home/xiaowen/c_project/proteomics_cpp/testcases/data/st_no_digestion.msalign 1210 1695 2266 39 9 9782.875901109373 9782.813444333497 4144 gi|16765477|ref|NP_461092.1| putative periplasmic protein [Salmonella typhimurium LT2] 11884.955469327393 20 104 A.APATTGIDQYELKSFIADFTHFKPGDTVPQMYRTDEYNIKQWKLRNLPAPDAGTHWTYMGGAYVLINDTDGKIIKAYDGEIFYHR. 0 22.0 20.0 7.595397966639977E-18 2.0507574509927938E-16 0.0
/home/xiaowen/c_project/proteomics_cpp/testcases/data/st_no_digestion.msalign 420 826 1107 132 14 7942.016767179687 7941.976240354003 7898 gi|16767362|ref|NP_462977.1| 50S ribosomal subunit protein L31 [Salmonella typhimurium LT2] 7941.9762403540035 1 70 .MKKGIHPNYVEITATCSCGNVIKTHSTVGHDLNLDVCGKCHPFFTGKQRVVDTGGRVERFNKRFSIPGSK. 0 45.0 28.0 1.0298036964252194E-16 2.0596073928504389E-16 0.0
/home/xiaowen/c_project/proteomics_cpp/testcases/data/st_no_digestion.msalign 1535 2126 2840 66 11 9250.098581285158 9250.018581285158 870 gi|16763832|ref|NP_459447.1| DNA-binding protein HU-beta [Salmonella typhimurium LT2] 9234.010030942383 1 90 .(MN)[16.01]KSQLIEKIAAGADISKAAAGRALDAIIASVTESLKEGDDVALVGFGTFAVKERAARTGRNPQTGKEITIAAAKVPSFRAGKALKDAVN. 1 22.0 21.0 5.822141394995731E-16 2.1502226742881963E-16 0.0
/home/xiaowen/c_project/proteomics_cpp/testcases/data/st_no_digestion.msalign 757 1173 1570 156 19 10278.694782566408 10278.658636289063 6632 gi|16766725|ref|NP_462340.1| 30S ribosomal subunit protein S19 [Salmonella typhimurium LT2] 10409.699133115235 2 92 M.PRSLKKGPFIDLHLLKKVEKAVESGDKKPLRTWSRRSTIFPNMIGLTIAVHNGRQHVPVFVSDEMVGHKLGEFAPTRTYRGHAADKKAKKK. 0 32.0 22.0 2.158854890451495E-16 2.158854890451495E-16 0.0
/home/xiaowen/c_project/proteomics_cpp/testcases/data/st_no_digestion.msalign 1326 1827 2442 158 16 9515.243743875 9515.17277355713 8022 gi|16767424|ref|NP_463039.1| DNA-binding protein HU-alpha [Salmonella typhimurium LT2] 9515.17277355713 1 90 .MNKTQLIDVIADKAELSKTQAKAALESTLAAITESLKEGDAVQLVGFGTFKVNHRAERTGRNPQTGKEIKIAAANVPAFVSGKALKDAVK. 0 45.0 29.0 1.1308799138418524E-16 2.2617598276837047E-16 0.0
/home/xiaowen/c_project/proteomics_cpp/testcases/data/st_no_digestion.msalign 1798 2533 3383 112 7 8795.453047632813 8795.422834592286 816 gi|16763804|ref|NP_459419.1| exonuclease VII small subunit [Salmonella typhimurium LT2] 8926.463331418458 2 80 M.PKKNEAPASFETALSELEHIVTRLESGDLPLEDALNEFERGVQLARQGQAKLQQAEQRVQILLSDNEEASPEPFIADNE. 0 32.0 29.0 2.6008028066697344E-16 2.6008028066697344E-16 0.0
/home/xiaowen/c_project/proteomics_cpp/testcases/data/st_no_digestion.msalign 1651 2278 3043 178 15 11211.768012496093 11211.739576535645 4466 gi|16765638|ref|NP_461253.1| putative inner membrane protein [Salmonella typhimurium LT2] 11629.921674924317 4 103 M.SYQFGESRVDDDLTLLSETLEEVLRSSGDPADQKYIELKARAEQALEEVKNRVSHASDSYYYRAKQAVYKADDYVHEKPWQGIGVGAAVGLVLGLLLARR. 0 44.0 36.0 7.935104720088515E-18 2.7772866520309803E-16 0.0
/home/xiaowen/c_project/proteomics_cpp/testcases/data/st_no_digestion.msalign 1106 1565 2092 67 6 7445.8090819687495 7445.8090819687495 1216 gi|16764006|ref|NP_459621.1| negative regulator [Salmonella typhimurium LT2] 7446.7773954443355 1 69 .MSKIKGNVKWFNESKGFGF(I)[1.04]TPEDGSKDVFVHFSAIQTNGFKTLAEGQRVEFEITNGAKGPSAANVT(AL)[-2.00]. 2 34.0 29.0 2.872190901761732E-17 2.780073390604787E-16 0.0
/home/xiaowen/c_project/proteomics_cpp/testcases/data/st_no_digestion.msalign 1306 1805 2412 57 15 10614.607104347659 10614.512960629881 1892 gi|16764342|ref|NP_459957.1| integration host factor beta subunit [Salmonella typhimurium LT2] 10614.512960629883 1 94 .MTKSELIERLATQQSHIPAKAVEDAVKEMLEHMASTLAQGERIEIRGFGSFSLHYRAPRTGRNPKTGDKVELEGKYVPHFKPGKELRDRANIYG. 0 20.0 16.0 1.4558838277470011E-16 2.9117676554940023E-16 0.0
/home/xiaowen/c_project/proteomics_cpp/testcases/data/st_no_digestion.msalign 81 457 615 178 7 11080.895490992187 11080.895490992187 1452 gi|16764124|ref|NP_459739.1| hypothetical protein STM0759 [Salmonella typhimurium LT2] 13436.224081235352 25 128 A.AESNAQSSNGQANSAANAGQVAPDARQNVAPNDVNNNDINT(N)[16.03]GNTNSTMQHPDGSTMNHDGMTKDEEHKNTMCKDGRCPDINKKVETGNGVNNDVNTKTDGTTQ. 1 39.0 32.0 1.209171918289018E-17 3.2040833092162123E-16 0.0
/home/xiaowen/c_project/proteomics_cpp/testcases/data/st_no_digestion.msalign 1315 1816 2427 90 11 9515.268099949222 9515.17277355713 8022 gi|16767424|ref|NP_463039.1| DNA-binding protein HU-alpha [Salmonella typhimurium LT2] 9515.17277355713 1 90 .MNKTQLIDVIADKAELSKTQAKAALESTLAAITESLKEGDAVQLVGFGTFKVNHRAERTGRNPQTGKEIKIAAANVPAFVSGKALKDAVK. 0 30.0 27.0 1.60336600780381E-16 3.20673201560762E-16 0.0
/home/xiaowen/c_project/proteomics_cpp/testcases/data/st_no_digestion.msalign 859 1279 1711 152 16 9699.311562375 9699.242078977051 6622 gi|16766720|ref|NP_462335.1| 30S ribosomal subunit protein S17 [Salmonella typhimurium LT2] 9830.282575803223 2 84 M.TDKIRTLQGRVVSDKMEKSIVVAIERFVKHPIYGKFIKRTTKMHVHDENNECGIGDVVEIRECRPLSKTKSWTLVRVVEKAVL. 0 38.0 25.0 3.233454961383467E-16 3.233454961383467E-16 0.0
/home/xiaowen/c_project/proteomics_cpp/testcases/data/st_no_digestion.msalign 38 411 554 73 8 4416.46765871875 4416.46765871875 6598 gi|16766708|ref|NP_462323.1| 50S ribosomal subunit protein X [Salmonella typhimurium LT2] 4532.514040189209 1 38 .MKVRASVKK(LCRNCK)[-116.05]IVKRDGVIRVICSAEPKHKQRQG. 1 34.0 25.0 7.311347529461291E-15 3.535901657310284E-16 0.0
/home/xiaowen/c_project/proteomics_cpp/testcases/data/st_no_digestion.msalign 1297 1792 2395 110 11 7256.023804742187 7255.987646298828 6624 gi|16766721|ref|NP_462336.1| 50S ribosomal subunit protein L29 [Salmonella typhimurium LT2] 7255.987646298828 1 63 .MKAKELREKSVEELNTELLNLLREQFNLRMQAASGQLQQSHLLKQVRRDVARVKTLLTEKAGA. 0 40.0 27.0 1.8904551593807659E-16 3.7809103187615317E-16 0.0
/home/xiaowen/c_project/proteomics_cpp/testcases/data/st_no_digestion.msalign 1641 2267 3028 143 13 9261.084534566407 9261.074534566407 870 gi|16763832|ref|NP_459447.1| DNA-binding protein HU-beta [Salmonella typhimurium LT2] 9234.010030942383 1 90 .(MNKSQLIEKIAAGADISKAAAGRAL)[28.00]DAIIASVTESLKEGDD(V)[-.94]ALVGFGTFAVKERAARTGRNPQTGKEITIAAAKVPSFRAGKALKDAVN. 2 58.0 37.0 2.1748835064212032E-17 4.0322256636547E-16 0.0
/home/xiaowen/c_project/proteomics_cpp/testcases/data/st_no_digestion.msalign 1090 1544 2064 147 14 9228.085236171875 9228.085236171875 5168 gi|16765991|ref|NP_461606.1| 30S ribosomal subunit protein S16 [Salmonella typhimurium LT2] 9229.012678342286 1 82 .MVTIRLARHGAKKRPFYQVVVTDSRNARNGRFIERVGFFN(PI)[-.93]ASEKEEGTRLDLDRIAHWVGQGATISDRVAALIKEVKKAA. 1 41.0 29.0 2.7009020785795737E-15 4.0544719424404685E-16 0.0
/home/xiaowen/c_project/proteomics_cpp/testcases/data/st_no_digestion.msalign 1100 1555 2079 153 16 9229.080693937498 9229.012678342286 5168 gi|16765991|ref|NP_461606.1| 30S ribosomal subunit protein S16 [Salmonella typhimurium LT2] 9229.012678342286 1 82 .MVTIRLARHGAKKRPFYQVVVTDSRNARNGRFIERVGFFNPIASEKEEGTRLDLDRIAHWVGQGATISDRVAALIKEVKKAA. 0 36.0 25.0 2.1294865809994236E-16 4.258973161998847E-16 0.0
/home/xiaowen/c_project/proteomics_cpp/testcases/data/st_no_digestion.msalign 778 1195 1599 84 15 10278.701120453125 10278.658636289065 6632 gi|16766725|ref|NP_462340.1| 30S ribosomal subunit protein S19 [Salmonella typhimurium LT2] 10409.699133115235 2 92 M.PRSLKKGPFIDLHLLKKVEKAVESGDKKPLRTWSRRSTIFPNMIGLTIAVHNGRQHVPVFVSDEMVGHKLGEFAPTRTYRGHAADKKAKKK. 0 29.0 20.0 4.318512690999098E-16 4.318512690999098E-16 0.0
/home/xiaowen/c_project/proteomics_cpp/testcases/data/st_no_digestion.msalign 1421 1963 2623 90 10 9113.818854945315 9113.737188535157 4692 gi|16765751|ref|NP_461366.1| phosphohistidinoprotein-hexose phosphotransferase [Salmonella typhimurium LT2] 9113.737188535157 1 85 .MFQQEVTITAPNGLHTRPAAQFVKEAKGFTSEITVTSNGKSASAKSLFKLQTLGLTQGTVVTISAEGEDEQKAVEHLVKLMAELE. 0 26.0 23.0 2.1816005007977244E-16 4.363201001595449E-16 0.0
/home/xiaowen/c_project/proteomics_cpp/testcases/data/st_no_digestion.msalign 469 876 1174 130 12 7825.950901843751 7825.930901843752 7898 gi|16767362|ref|NP_462977.1| 50S ribosomal subunit protein L31 [Salmonella typhimurium LT2] 7941.9762403540035 1 70 .MKKGIHPNYVEITATCSCGNVIKTHSTVGHDLNLDV(CGKC)[-116.05]HPFFTGKQRVVDTGGRVERFNKRFSIPGSK. 1 41.0 30.0 2.097523556312461E-15 4.49430220295902E-16 0.0
/home/xiaowen/c_project/proteomics_cpp/testcases/data/st_no_digestion.msalign 92 471 634 184 11 11064.960136992187 11064.865835385743 1452 gi|16764124|ref|NP_459739.1| hypothetical protein STM0759 [Salmonella typhimurium LT2] 13436.224081235352 25 128 A.AESNAQSSNGQANSAANAGQVAPDARQNVAPNDVNNNDINTNGNTNSTMQHPDGSTMNHDGMTKDEEHKNTMCKDGRCPDINKKVETGNGVNNDVNTKTDGTTQ. 0 41.0 32.0 1.3974149003772542E-17 4.611469171244939E-16 0.0
/home/xiaowen/c_project/proteomics_cpp/testcases/data/st_no_digestion.msalign 1276 1768 2363 94 9 10099.406230617184 10099.348730283205 7232 gi|16767026|ref|NP_462641.1| RNA polymerase omega subunit [Salmonella typhimurium LT2] 10230.389227109375 2 91 M.ARVTVQDAVEKIGNRFDLVLVAARRARQMQVGGKDPLVPEENDKTTVIALREIEEGLINNQILDVRERQEQQEQEAAELQAVTAIAEGRR. 0 28.0 23.0 5.443391643745968E-16 5.443391643745968E-16 0.0
/home/xiaowen/c_project/proteomics_cpp/testcases/data/st_no_digestion.msalign 98 480 646 89 9 5365.870345339845 5365.83616467041 3026 gi|16764909|ref|NP_460524.1| 30S ribosomal subunit protein S22 [Salmonella typhimurium LT2] 5365.83616467041 1 47 .MKSNRQARHILGLDYRISNQRKVVTEGDTSSVVNNPTGRKRRADSQK. 0 31.0 22.0 2.750121158739245E-16 5.50024231747849E-16 0.0
/home/xiaowen/c_project/proteomics_cpp/testcases/data/st_no_digestion.msalign 641 1051 1407 149 15 8970.935204906253 8970.880617337647 7206 gi|16767013|ref|NP_462628.1| 50S ribosomal subunit protein L28 [Salmonella typhimurium LT2] 9101.921114163819 2 78 M.SRVCQVTGKRPVTGNNRSHALNATKRRFLPNLHSHRFWVESEKRFVTLRVSAKGMRIIDKKGIETVLSELRARGEKY. 0 33.0 28.0 5.762524685871073E-16 5.762524685871073E-16 0.0
/home/xiaowen/c_project/proteomics_cpp/testcases/data/st_no_digestion.msalign 46 419 564 73 10 4416.470928984375 4416.470928984375 6598 gi|16766708|ref|NP_462323.1| 50S ribosomal subunit protein X [Salmonella typhimurium LT2] 4532.514040189209 1 38 .MKVRASVK(KLCRNCK)[-116.04]IVKRDGVIRVICSAEPKHKQRQG. 1 26.0 20.0 1.2023905285008905E-14 5.814980953003263E-16 0.0
/home/xiaowen/c_project/proteomics_cpp/testcases/data/st_no_digestion.msalign 254 652 875 47 4 2823.5051790937496 2823.4999830297857 354 gi|16763570|ref|NP_459185.1| aspartate 1-decarboxylase [Salmonella typhimurium LT2] 13992.038381772461 1 24 .MIRTMLQGKLHRVKVTQADLHYEG.S 0 26.0 22.0 7.61832613159351E-18 6.094660905274809E-16 0.0
/home/xiaowen/c_project/proteomics_cpp/testcases/data/st_no_digestion.msalign 136 521 700 74 9 4461.538492718751 4461.5334927187505 7204 gi|16767012|ref|NP_462627.1| 50S ribosomal subunit protein L33 [Salmonella typhimurium LT2] 6367.619703488769 2 40 M.(A)[14.03]KGIREKIKLVSSAGTGHFYTTTKNKRTKPEKLELKKFD.P 1 31.0 21.0 1.7786463527662155E-17 6.225262234681755E-16 0.0
/home/xiaowen/c_project/proteomics_cpp/testcases/data/st_no_digestion.msalign 309 709 951 140 18 8420.733921476563 8420.707170682374 6198 gi|16766509|ref|NP_462124.1| 30S ribosomal subunit protein S21 [Salmonella typhimurium LT2] 8551.747667508545 2 71 M.PVIKVRENEPFDVALRRFKRSCEKAGVLAEVRRREFYEKPTTERKRAKASAVKRHAKKLARENARRTRLY. 0 33.0 23.0 6.528376109381779E-16 6.528376109381779E-16 0.0
/home/xiaowen/c_project/proteomics_cpp/testcases/data/st_no_digestion.msalign 445 852 1142 134 14 8094.0000479531245 8094.0000479531245 7898 gi|16767362|ref|NP_462977.1| 50S ribosomal subunit protein L31 [Salmonella typhimurium LT2] 7941.9762403540035 1 70 .MKKGIHPNYVEITATCSC(G)[152.02]NVIKTHSTVGHDLNLDVCGKCHPFFTGKQRVVDTGGRVERFNKRFSIPGSK. 1 41.0 29.0 2.826378680534119E-15 7.02444198895309E-16 0.0
/home/xiaowen/c_project/proteomics_cpp/testcases/data/st_no_digestion.msalign 43 416 560 73 7 4416.466023585937 4416.466023585937 6598 gi|16766708|ref|NP_462323.1| 50S ribosomal subunit protein X [Salmonella typhimurium LT2] 4532.514040189209 1 38 .MKVRASVKK(LCRNC)[-116.05]KIVKRDGVIRVICSAEPKHKQRQG. 1 28.0 24.0 1.6634087495761996E-14 8.044549559039054E-16 0.0
/home/xiaowen/c_project/proteomics_cpp/testcases/data/st_no_digestion.msalign 26 398 536 75 9 4532.527195214844 4532.5140401892095 6598 gi|16766708|ref|NP_462323.1| 50S ribosomal subunit protein X [Salmonella typhimurium LT2] 4532.514040189209 1 38 .MKVRASVKKLCRNCKIVKRDGVIRVICSAEPKHKQRQG. 0 25.0 19.0 4.0524801840494636E-16 8.104960368098927E-16 0.0
/home/xiaowen/c_project/proteomics_cpp/testcases/data/st_no_digestion.msalign 705 1120 1499 71 9 6509.640863699219 6509.614042478027 6604 gi|16766711|ref|NP_462326.1| 50S ribosomal subunit protein L30 [Salmonella typhimurium LT2] 6509.614042478027 1 59 .MAKTIKITQTRSAIGRLPKHKATLLGLGLRRIGHTVEREDTPAVRGMVNAVSFMVKVEE. 0 30.0 23.0 4.1295274699277046E-16 8.259054939855409E-16 0.0
/home/xiaowen/c_project/proteomics_cpp/testcases/data/st_no_digestion.msalign 1267 1757 2348 164 10 10098.404569851566 10098.404569851566 7232 gi|16767026|ref|NP_462641.1| RNA polymerase omega subunit [Salmonella typhimurium LT2] 10230.389227109375 2 91 M.ARVTVQDAVEKIGNRFDLVLVAARRARQMQVGGKDPLVPEENDKTTVI(ALREIEEGLI)[-935.63]NNQILDV(R)[934.69]ERQEQQEQEAAELQAVTAIAEGRR. 2 50.0 39.0 2.3088954365647986E-17 8.830826569111994E-16 0.0
/home/xiaowen/c_project/proteomics_cpp/testcases/data/st_no_digestion.msalign 464 871 1167 121 9 7825.929333847658 7825.924333847658 7898 gi|16767362|ref|NP_462977.1| 50S ribosomal subunit protein L31 [Salmonella typhimurium LT2] 7941.9762403540035 1 70 .MKKGIHPNYVEITAT(CSC)[-116.05]GNVIKTHSTVGHDLNLDVCGKCHPFFTGKQRVVDTGGRVERFNKRFSIPGSK. 1 42.0 28.0 4.1935197019612735E-15 8.985331667888565E-16 0.0
/home/xiaowen/c_project/proteomics_cpp/testcases/data/st_no_digestion.msalign 862 1282 1715 144 14 8948.899643226561 8948.899643226561 8452 gi|16767639|ref|NP_463254.1| 30S ribosomal subunit protein S18 [Salmonella typhimurium LT2] 9122.931947904053 2 75 M.(ARYFRRRKFCRFTAEG)[42.01]VQEIDYKDIATLKNYITE(SGKIVPSRITGTRAKY)[-85.00]QRQLRRAIKRARYLSLLPYTDRHQ. 1 35.0 27.0 5.6566280048449756E-15 9.118829899469448E-16 0.0
/home/xiaowen/c_project/proteomics_cpp/testcases/data/st_no_digestion.msalign 744 1160 1552 145 9 9518.326780367188 9518.289663510745 86 gi|16763433|ref|NP_459048.1| 30S ribosomal subunit protein S20 [Salmonella typhimurium LT2] 9649.330160336915 2 87 M.ANIKSAKKRAVQSEKARKHNASRRSMMRTFIKKVYAAIEAGDKAAALKAFNEMQPIVDRQAAKGLIHKNKAARHKANLTAQINKLA. 0 30.0 27.0 9.598749646459691E-16 9.598749646459691E-16 0.0
/home/xiaowen/c_project/proteomics_cpp/testcases/data/st_no_digestion.msalign 1804 2553 3410 107 13 15998.6051479375 15998.482710080565 802 gi|16763797|ref|NP_459412.1| riboflavin synthase beta chain [Salmonella typhimurium LT2] 15998.482710080567 1 156 .MNIIKANVAAPDARVAITIARFNQFINDSLLDGAVDALTRIGQVKDDNITVVWVPGAYELPLATEALAKSGKYDAVVALGTVIRGGTAHFEYVAGGASNGLASVAQDSGVPVAFGVLTTESIEQAIERAGTKAGNKGAEAALTALEMINVLKAIKA. 0 49.0 30.0 5.079097055846831E-16 1.0158194111693661E-15 0.0
/home/xiaowen/c_project/proteomics_cpp/testcases/data/st_no_digestion.msalign 147 534 718 55 5 4482.2000520078145 4482.182546811524 3864 gi|16765337|ref|NP_460952.1| putative endoprotease [Salmonella typhimurium LT2] 16651.30049343628 2 46 M.ALTDTAGGTQTDPGTGKPSENPPAAPNKPTPPKEETPPGAPEKYA.F 0 25.0 21.0 1.7298677588642207E-17 1.089816688084459E-15 0.0
/home/xiaowen/c_project/proteomics_cpp/testcases/data/st_no_digestion.msalign 1097 1551 2074 152 15 9229.088214078123 9229.012678342284 5168 gi|16765991|ref|NP_461606.1| 30S ribosomal subunit protein S16 [Salmonella typhimurium LT2] 9229.012678342286 1 82 .MVTIRLARHGAKKRPFYQVVVTDSRNARNGRFIERVGFFNPIASEKEEGTRLDLDRIAHWVGQGATISDRVAALIKEVKKAA. 0 36.0 25.0 5.715276674784357E-16 1.1430553349568713E-15 0.0
/home/xiaowen/c_project/proteomics_cpp/testcases/data/st_no_digestion.msalign 851 1271 1700 94 13 8948.887021765626 8948.887021765626 8452 gi|16767639|ref|NP_463254.1| 30S ribosomal subunit protein S18 [Salmonella typhimurium LT2] 9122.931947904053 2 75 M.(ARYFRRRKFCRFTAEGV)[42.01]QEIDYKDIATLKNYITES(GKIVPSRITGTRAKYQRQLRRAIKRARYLSLL)[-85.02]PYTDRHQ. 1 27.0 22.0 7.247224935531624E-15 1.152924603861006E-15 0.0
/home/xiaowen/c_project/proteomics_cpp/testcases/data/st_no_digestion.msalign 1294 1788 2390 118 11 7256.064759332031 7255.987646298828 6624 gi|16766721|ref|NP_462336.1| 50S ribosomal subunit protein L29 [Salmonella typhimurium LT2] 7255.987646298828 1 63 .MKAKELREKSVEELNTELLNLLREQFNLRMQAASGQLQQSHLLKQVRRDVARVKTLLTEKAGA. 0 41.0 27.0 5.787284633457995E-16 1.157456926691599E-15 0.0
/home/xiaowen/c_project/proteomics_cpp/testcases/data/st_no_digestion.msalign 190 584 784 104 13 6250.613490242187 6250.608490242187 7204 gi|16767012|ref|NP_462627.1| 50S ribosomal subunit protein L33 [Salmonella typhimurium LT2] 6367.619703488769 2 55 M.AKGIREK(IKLV)[14.03]SSAGTGHFYTTTKNKRTKPEKLELKKFDPVVRQHVIYKEAKIK. 1 27.0 22.0 9.82757112193793E-15 1.215503528595163E-15 0.0
/home/xiaowen/c_project/proteomics_cpp/testcases/data/st_no_digestion.msalign 1251 1740 2326 120 7 7256.045340382812 7255.987646298828 6624 gi|16766721|ref|NP_462336.1| 50S ribosomal subunit protein L29 [Salmonella typhimurium LT2] 7255.987646298828 1 63 .MKAKELREKSVEELNTELLNLLREQFNLRMQAASGQLQQSHLLKQVRRDVARVKTLLTEKAGA. 0 33.0 31.0 6.195054281035743E-16 1.2390108562071485E-15 0.0
/home/xiaowen/c_project/proteomics_cpp/testcases/data/st_no_digestion.msalign 25 397 535 75 8 4532.52623146875 4532.514040189209 6598 gi|16766708|ref|NP_462323.1| 50S ribosomal subunit protein X [Salmonella typhimurium LT2] 4532.514040189209 1 38 .MKVRASVKKLCRNCKIVKRDGVIRVICSAEPKHKQRQG. 0 27.0 21.0 6.548362333444835E-16 1.309672466688967E-15 0.0
/home/xiaowen/c_project/proteomics_cpp/testcases/data/st_no_digestion.msalign 297 697 935 140 15 8420.735424769531 8420.707170682374 6198 gi|16766509|ref|NP_462124.1| 30S ribosomal subunit protein S21 [Salmonella typhimurium LT2] 8551.747667508545 2 71 M.PVIKVRENEPFDVALRRFKRSCEKAGVLAEVRRREFYEKPTTERKRAKASAVKRHAKKLARENARRTRLY. 0 31.0 23.0 1.3156935240802829E-15 1.3156935240802829E-15 0.0
/home/xiaowen/c_project/proteomics_cpp/testcases/data/st_no_digestion.msalign 84 460 619 176 10 11079.915288968752 11079.915288968752 1452 gi|16764124|ref|NP_459739.1| hypothetical protein STM0759 [Salmonella typhimurium LT2] 13436.224081235352 25 128 A.AESNAQSSNGQANSAANAGQVAPDARQNVAPNDVNNNDINTNGNTNSTMQHPDGSTMNHDGMTKDEEHKNT(MCKD)[15.05]GRCPDINKKVETGNGVNNDVNTKTDGTTQ. 1 46.0 35.0 5.024386374820283E-17 1.3247879277224477E-15 0.0
/home/xiaowen/c_project/proteomics_cpp/testcases/data/st_no_digestion.msalign 39 412 555 73 8 4416.46765871875 4416.46765871875 6598 gi|16766708|ref|NP_462323.1| 50S ribosomal subunit protein X [Salmonella typhimurium LT2] 4532.514040189209 1 38 .MKVRASVK(KLCRNCK)[-116.05]IVKRDGVIRVICSAEPKHKQRQG. 1 28.0 21.0 2.800694698148141E-14 1.3544672832056994E-15 0.0
/home/xiaowen/c_project/proteomics_cpp/testcases/data/st_no_digestion.msalign 148 535 719 70 5 4482.2000520078145 4482.182546811524 3864 gi|16765337|ref|NP_460952.1| putative endoprotease [Salmonella typhimurium LT2] 16651.30049343628 2 46 M.ALTDTAGGTQTDPGTGKPSENPPAAPNKPTPPKEETPPGAPEKYA.F 0 29.0 23.0 2.208556787953174E-17 1.3913907764104996E-15 0.0
/home/xiaowen/c_project/proteomics_cpp/testcases/data/st_no_digestion.msalign 1108 1568 2096 151 12 9229.070491296874 9229.012678342286 5168 gi|16765991|ref|NP_461606.1| 30S ribosomal subunit protein S16 [Salmonella typhimurium LT2] 9229.012678342286 1 82 .MVTIRLARHGAKKRPFYQVVVTDSRNARNGRFIERVGFFNPIASEKEEGTRLDLDRIAHWVGQGATISDRVAALIKEVKKAA. 0 34.0 28.0 7.248048008447354E-16 1.4496096016894708E-15 0.0
/home/xiaowen/c_project/proteomics_cpp/testcases/data/st_no_digestion.msalign 103 485 652 89 10 5365.868745609376 5365.83616467041 3026 gi|16764909|ref|NP_460524.1| 30S ribosomal subunit protein S22 [Salmonella typhimurium LT2] 5365.83616467041 1 47 .MKSNRQARHILGLDYRISNQRKVVTEGDTSSVVNNPTGRKRRADSQK. 0 27.0 20.0 7.379522449837525E-16 1.475904489967505E-15 0.0
/home/xiaowen/c_project/proteomics_cpp/testcases/data/st_no_digestion.msalign 562 969 1298 51 5 3110.6507251250005 3110.6345579199224 7986 gi|16767406|ref|NP_463021.1| 50S ribosomal subunit protein L7/L12 [Salmonella typhimurium LT2] 12291.470907407227 92 121 A.PAALKEGVSKDDAEALKKSLEEAGAEVEVK. 0 26.0 22.0 6.370213419677703E-17 1.5288512207226488E-15 0.0
/home/xiaowen/c_project/proteomics_cpp/testcases/data/st_no_digestion.msalign 1869 2667 3562 96 13 12290.57633284375 12290.46633284375 7986 gi|16767406|ref|NP_463021.1| 50S ribosomal subunit protein L7/L12 [Salmonella typhimurium LT2] 12291.470907407227 1 121 .MSITKDQIIEAVSAMSVMDVVELISAMEEKFGVSAAAAVAVAAGPAEAAEEKTEFDVILKAAGANKVAVIKAVRGATGLGLK(EAKDLVESAPAALKEGVSKDDAEALKKSLEEAGAEVEVK)[-1.00]. 1 32.0 27.0 5.3329603594124585E-15 1.5355265657957407E-15 0.0
/home/xiaowen/c_project/proteomics_cpp/testcases/data/st_no_digestion.msalign 455 862 1155 86 9 8094.015553929688 8094.015553929688 7898 gi|16767362|ref|NP_462977.1| 50S ribosomal subunit protein L31 [Salmonella typhimurium LT2] 7941.9762403540035 1 70 .MKKGIHPNYVEITATCS(C)[152.04]GNVIKTHSTVGHDLNLDVCGKCHPFFTGKQRVVDTGGRVERFNKRFSIPGSK. 1 36.0 28.0 6.401497525066438E-15 1.5909739313048554E-15 0.0
/home/xiaowen/c_project/proteomics_cpp/testcases/data/st_no_digestion.msalign 824 1242 1662 136 11 10657.604407031251 10657.604407031251 3628 gi|16765217|ref|NP_460832.1| putative copper resistance protein [Salmonella typhimurium LT2] 13312.989523129883 27 121 A.HAHLTHQYPAANAAVTASPQALTLNFSEGIEPGFSGATIT(GPQQELIKTRPAKRNEQDK)[297.27]TQLIIPLEQPLKSGAYTVDWHVV(SVDGHKTKGKYTF)[15.98].S 2 65.0 52.0 3.8579197584508917E-23 1.6096358409449982E-15 0.0
/home/xiaowen/c_project/proteomics_cpp/testcases/data/st_no_digestion.msalign 33 405 546 75 10 4532.5268161875 4532.514040189209 6598 gi|16766708|ref|NP_462323.1| 50S ribosomal subunit protein X [Salmonella typhimurium LT2] 4532.514040189209 1 38 .MKVRASVKKLCRNCKIVKRDGVIRVICSAEPKHKQRQG. 0 24.0 18.0 8.350658350844166E-16 1.6701316701688333E-15 0.0
/home/xiaowen/c_project/proteomics_cpp/testcases/data/st_no_digestion.msalign 465 872 1168 119 8 7825.9326425625 7825.9326425625 7898 gi|16767362|ref|NP_462977.1| 50S ribosomal subunit protein L31 [Salmonella typhimurium LT2] 7941.9762403540035 1 70 .MKKGIHPNYVEITAT(C)[-116.04]SCGNVIKTHSTVGHDLNLDVCGKCHPFFTGKQRVVDTGGRVERFNKRFSIPGSK. 1 42.0 31.0 8.342918552377855E-15 1.7876126881253424E-15 0.0
/home/xiaowen/c_project/proteomics_cpp/testcases/data/st_no_digestion.msalign 21 393 530 75 9 4532.526096582032 4532.5140401892095 6598 gi|16766708|ref|NP_462323.1| 50S ribosomal subunit protein X [Salmonella typhimurium LT2] 4532.514040189209 1 38 .MKVRASVKKLCRNCKIVKRDGVIRVICSAEPKHKQRQG. 0 28.0 21.0 9.003106298253735E-16 1.800621259650747E-15 0.0
/home/xiaowen/c_project/proteomics_cpp/testcases/data/st_no_digestion.msalign 1001 1431 1914 129 10 8113.33260875 8113.281858640137 1836 gi|16764314|ref|NP_459929.1| protein chain initiation factor IF-1 [Salmonella typhimurium LT2] 8244.32235546631 2 72 M.AKEDNIEMQGTVLETLPNTMFRVELENGHVVTAHISGKMRKNYIRILTGDKVTVELTPYDLSKGRIVFRSR. 0 37.0 25.0 9.9354081045781E-16 1.98708162091562E-15 0.0
/home/xiaowen/c_project/proteomics_cpp/testcases/data/st_no_digestion.msalign 57 430 579 105 10 6327.401173382812 6327.401173382812 2302 gi|16764546|ref|NP_460161.1| 50S ribosomal subunit protein L32 [Salmonella typhimurium LT2] 6442.431486325683 2 57 M.(AV)[16.01]QQNKPTRSKRGMRRSHDALTAVTSLSVDKTSGEKHLRHHITADGYYRGRKVIAK. 1 39.0 26.0 1.0049404649303679E-14 2.0135419151610286E-15 0.0
/home/xiaowen/c_project/proteomics_cpp/testcases/data/st_no_digestion.msalign 1254 1743 2330 120 7 7256.043631398437 7255.987646298828 6624 gi|16766721|ref|NP_462336.1| 50S ribosomal subunit protein L29 [Salmonella typhimurium LT2] 7255.987646298828 1 63 .MKAKELREKSVEELNTELLNLLREQFNLRMQAASGQLQQSHLLKQVRRDVARVKTLLTEKAGA. 0 32.0 30.0 1.0244315814196829E-15 2.0488631628393657E-15 0.0
/home/xiaowen/c_project/proteomics_cpp/testcases/data/st_no_digestion.msalign 105 487 655 89 10 5365.866304203126 5365.83616467041 3026 gi|16764909|ref|NP_460524.1| 30S ribosomal subunit protein S22 [Salmonella typhimurium LT2] 5365.83616467041 1 47 .MKSNRQARHILGLDYRISNQRKVVTEGDTSSVVNNPTGRKRRADSQK. 0 26.0 20.0 1.0540085963648652E-15 2.1080171927297305E-15 0.0
/home/xiaowen/c_project/proteomics_cpp/testcases/data/st_no_digestion.msalign 1247 1736 2320 119 9 7256.040859183595 7255.987646298827 6624 gi|16766721|ref|NP_462336.1| 50S ribosomal subunit protein L29 [Salmonella typhimurium LT2] 7255.987646298828 1 63 .MKAKELREKSVEELNTELLNLLREQFNLRMQAASGQLQQSHLLKQVRRDVARVKTLLTEKAGA. 0 35.0 26.0 1.2227564912466805E-15 2.445512982493361E-15 0.0
/home/xiaowen/c_project/proteomics_cpp/testcases/data/st_no_digestion.msalign 1295 1789 2391 120 7 7256.05986675 7255.987646298828 6624 gi|16766721|ref|NP_462336.1| 50S ribosomal subunit protein L29 [Salmonella typhimurium LT2] 7255.987646298828 1 63 .MKAKELREKSVEELNTELLNLLREQFNLRMQAASGQLQQSHLLKQVRRDVARVKTLLTEKAGA. 0 32.0 31.0 1.4165511237480936E-15 2.8331022474961873E-15 0.0
/home/xiaowen/c_project/proteomics_cpp/testcases/data/st_no_digestion.msalign 28 400 539 75 6 4532.525402609375 4532.5140401892095 6598 gi|16766708|ref|NP_462323.1| 50S ribosomal subunit protein X [Salmonella typhimurium LT2] 4532.514040189209 1 38 .MKVRASVKKLCRNCKIVKRDGVIRVICSAEPKHKQRQG. 0 24.0 21.0 1.488332506281966E-15 2.976665012563932E-15 0.0
/home/xiaowen/c_project/proteomics_cpp/testcases/data/st_no_digestion.msalign 55 428 576 105 11 6326.395841507812 6326.395841507812 2302 gi|16764546|ref|NP_460161.1| 50S ribosomal subunit protein L32 [Salmonella typhimurium LT2] 6442.431486325683 2 57 M.AV(QQNKPTRSKRGM)[15.00]RRSHDALTAVTSLSVDKTSGEKHLRHHITADGYYRGRKVIAK. 1 33.0 20.0 2.2881692088987783E-14 2.9954215098311283E-15 0.0
/home/xiaowen/c_project/proteomics_cpp/testcases/data/st_no_digestion.msalign 753 1169 1564 109 18 10278.711519015624 10278.658636289065 6632 gi|16766725|ref|NP_462340.1| 30S ribosomal subunit protein S19 [Salmonella typhimurium LT2] 10409.699133115235 2 92 M.PRSLKKGPFIDLHLLKKVEKAVESGDKKPLRTWSRRSTIFPNMIGLTIAVHNGRQHVPVFVSDEMVGHKLGEFAPTRTYRGHAADKKAKKK. 0 27.0 18.0 3.0346177797342048E-15 3.0346177797342048E-15 0.0
/home/xiaowen/c_project/proteomics_cpp/testcases/data/st_no_digestion.msalign 1085 1537 2055 95 9 7446.834067933595 7446.7773954443355 1216 gi|16764006|ref|NP_459621.1| negative regulator [Salmonella typhimurium LT2] 7446.7773954443355 1 69 .MSKIKGNVKWFNESKGFGFITPEDGSKDVFVHFSAIQTNGFKTLAEGQRVEFEITNGAKGPSAANVTAL. 0 38.0 22.0 1.526291075544319E-15 3.052582151088638E-15 0.0
/home/xiaowen/c_project/proteomics_cpp/testcases/data/st_no_digestion.msalign 30 402 542 75 5 4532.529626851564 4532.514040189209 6598 gi|16766708|ref|NP_462323.1| 50S ribosomal subunit protein X [Salmonella typhimurium LT2] 4532.514040189209 1 38 .MKVRASVKKLCRNCKIVKRDGVIRVICSAEPKHKQRQG. 0 20.0 17.0 1.6523418113951666E-15 3.304683622790333E-15 0.0
/home/xiaowen/c_project/proteomics_cpp/testcases/data/st_no_digestion.msalign 693 1108 1483 106 9 6378.609118976564 6378.573545651855 6604 gi|16766711|ref|NP_462326.1| 50S ribosomal subunit protein L30 [Salmonella typhimurium LT2] 6509.614042478027 2 59 M.AKTIKITQTRSAIGRLPKHKATLLGLGLRRIGHTVEREDTPAVRGMVNAVSFMVKVEE. 0 37.0 25.0 3.307022738555746E-15 3.307022738555746E-15 0.0
/home/xiaowen/c_project/proteomics_cpp/testcases/data/st_no_digestion.msalign 104 486 654 89 8 5365.8688933124995 5365.83616467041 3026 gi|16764909|ref|NP_460524.1| 30S ribosomal subunit protein S22 [Salmonella typhimurium LT2] 5365.83616467041 1 47 .MKSNRQARHILGLDYRISNQRKVVTEGDTSSVVNNPTGRKRRADSQK. 0 29.0 25.0 1.6867465307725947E-15 3.3734930615451893E-15 0.0
/home/xiaowen/c_project/proteomics_cpp/testcases/data/st_no_digestion.msalign 1575 2172 2902 58 13 9234.092695277344 9234.010030942383 870 gi|16763832|ref|NP_459447.1| DNA-binding protein HU-beta [Salmonella typhimurium LT2] 9234.010030942383 1 90 .MNKSQLIEKIAAGADISKAAAGRALDAIIASVTESLKEGDDVALVGFGTFAVKERAARTGRNPQTGKEITIAAAKVPSFRAGKALKDAVN. 0 25.0 18.0 1.692135833339712E-15 3.384271666679424E-15 0.0
/home/xiaowen/c_project/proteomics_cpp/testcases/data/st_no_digestion.msalign 646 1056 1414 149 12 8970.917482125004 8970.880617337647 7206 gi|16767013|ref|NP_462628.1| 50S ribosomal subunit protein L28 [Salmonella typhimurium LT2] 9101.921114163819 2 78 M.SRVCQVTGKRPVTGNNRSHALNATKRRFLPNLHSHRFWVESEKRFVTLRVSAKGMRIIDKKGIETVLSELRARGEKY. 0 35.0 27.0 3.548505867459414E-15 3.548505867459414E-15 0.0
/home/xiaowen/c_project/proteomics_cpp/testcases/data/st_no_digestion.msalign 1654 2281 3047 146 14 11211.84663859375 11211.739576535645 4466 gi|16765638|ref|NP_461253.1| putative inner membrane protein [Salmonella typhimurium LT2] 11629.921674924317 4 103 M.SYQFGESRVDDDLTLLSETLEEVLRSSGDPADQKYIELKARAEQALEEVKNRVSHASDSYYYRAKQAVYKADDYVHEKPWQGIGVGAAVGLVLGLLLARR. 0 33.0 27.0 1.0126571396153103E-16 3.645565702615117E-15 0.0
/home/xiaowen/c_project/proteomics_cpp/testcases/data/st_no_digestion.msalign 1858 2653 3543 66 9 12290.532072585936 12290.522072585936 7986 gi|16767406|ref|NP_463021.1| 50S ribosomal subunit protein L7/L12 [Salmonella typhimurium LT2] 12291.470907407227 1 121 .MSITKDQIIEAVSAMSVMDVVELISAMEEKFGVSAA(AAV)[-.95]AVAAGPAEAAEEKTEFDVILKAAGANKVAVIKAVRGATGLGLKEAKDLVESAPAALKEGVSKDDAEALKKSLEEAGAEVEVK. 1 25.0 22.0 1.2739119611439335E-14 3.659525897227284E-15 0.0
/home/xiaowen/c_project/proteomics_cpp/testcases/data/st_no_digestion.msalign 1178 1658 2216 60 14 12218.84836471875 12218.769315915528 6630 gi|16766724|ref|NP_462339.1| 50S ribosomal subunit protein L22 [Salmonella typhimurium LT2] 12218.769315915528 1 110 .METIAKHRHARSSAQKVRLVADLIRGKKVSQALDILTYTNKKAAVLVKKVLESAIANAEHNDGADIDDLKVTKIFVDEGPSMKRIMPRAKGRADRILKRTSHITVVVSDR. 0 22.0 19.0 1.8328289620727648E-15 3.6656579241455296E-15 0.0
/home/xiaowen/c_project/proteomics_cpp/testcases/data/st_no_digestion.msalign 101 483 650 89 8 5365.8708464374995 5365.83616467041 3026 gi|16764909|ref|NP_460524.1| 30S ribosomal subunit protein S22 [Salmonella typhimurium LT2] 5365.83616467041 1 47 .MKSNRQARHILGLDYRISNQRKVVTEGDTSSVVNNPTGRKRRADSQK. 0 29.0 24.0 1.884753055662026E-15 3.769506111324052E-15 0.0
/home/xiaowen/c_project/proteomics_cpp/testcases/data/st_no_digestion.msalign 99 481 647 89 9 5365.870345339845 5365.83616467041 3026 gi|16764909|ref|NP_460524.1| 30S ribosomal subunit protein S22 [Salmonella typhimurium LT2] 5365.83616467041 1 47 .MKSNRQARHILGLDYRISNQRKVVTEGDTSSVVNNPTGRKRRADSQK. 0 29.0 21.0 2.022973474988879E-15 4.045946949977758E-15 0.0
/home/xiaowen/c_project/proteomics_cpp/testcases/data/st_no_digestion.msalign 836 1254 1678 129 14 10406.177833875001 10406.177833875001 1966 gi|16764378|ref|NP_459993.1| hypothetical protein STM1018 [Phage Gifsy-2] 11265.5324689917 8 96 L.MYQRMIFEEGKEPRLYSSQHDSKFIPISNNNGKVQKVPVME(LKD)[34.04]TRGDVFYAYNYAYSGKKPSNDEIYKAIDELKPIGEKFEMSKTISD. 1 36.0 29.0 1.82959300479191E-16 4.308716486626077E-15 0.0
/home/xiaowen/c_project/proteomics_cpp/testcases/data/st_no_digestion.msalign 478 885 1186 125 12 7825.961888171876 7825.961888171876 7898 gi|16767362|ref|NP_462977.1| 50S ribosomal subunit protein L31 [Salmonella typhimurium LT2] 7941.9762403540035 1 70 .MKKGIHPNYVEITATCSCGNVIKTHSTVGHDLNLDV(CGKC)[-116.01]HPFFTGKQRVVDTGGRVERFNKRFSIPGSK. 1 40.0 29.0 2.1646649991965094E-14 4.638164203342997E-15 0.0
/home/xiaowen/c_project/proteomics_cpp/testcases/data/st_no_digestion.msalign 534 941 1260 53 11 7079.472630246093 7079.462630246094 748 gi|16763769|ref|NP_459384.1| putative cytoplasmic protein [Salmonella typhimurium LT2] 7222.519148068847 2 63 M.PTRPPYPREAYIVTIEKGTPGQTVTWYQLRADHPKPDSL(ISEH)[-12.02]PTAEEAMDAKNRYEDPDKS. 1 19.0 15.0 8.046413365118381E-14 4.6900770069906775E-15 0.0
/home/xiaowen/c_project/proteomics_cpp/testcases/data/st_no_digestion.msalign 341 741 994 119 14 9628.7606966875 9628.722135739748 738 gi|16763764|ref|NP_459379.1| phosphate starvation-inducible protein [Salmonella typhimurium LT2] 11830.048254208985 22 106 A.TEKPLTPQQQRMTTCNQQATAQALKGDARKTYLSDCLKNSQSAPGEKSLTPQQQKMRECNVQATEQSLKGDDRSKFMSACLKKAA. 0 32.0 26.0 2.2590761467220216E-16 4.969967522788448E-15 0.0
/home/xiaowen/c_project/proteomics_cpp/testcases/data/st_no_digestion.msalign 1046 1478 1976 61 12 10534.631813000004 10534.58869 4296 gi|16765553|ref|NP_461168.1| 50S ribosomal subunit protein L25 [Salmonella typhimurium LT2] 10534.58869 1 94 .MFTINAEVRKEQGKGASRRLRAANKFPAIIYGGSEAPIAIELDHDQVMNMQAKAEFYSEVLTLVVDGKEVKVKAQAVQRHAYKPKLTHIDFVRA. 0 20.0 17.0 2.649877849847661E-15 5.299755699695322E-15 0.0
/home/xiaowen/c_project/proteomics_cpp/testcases/data/st_no_digestion.msalign 102 484 651 89 9 5365.8675987578135 5365.83616467041 3026 gi|16764909|ref|NP_460524.1| 30S ribosomal subunit protein S22 [Salmonella typhimurium LT2] 5365.83616467041 1 47 .MKSNRQARHILGLDYRISNQRKVVTEGDTSSVVNNPTGRKRRADSQK. 0 27.0 21.0 2.7323053007353285E-15 5.464610601470657E-15 0.0
/home/xiaowen/c_project/proteomics_cpp/testcases/data/st_no_digestion.msalign 645 1055 1412 149 16 8970.935253125 8970.880617337647 7206 gi|16767013|ref|NP_462628.1| 50S ribosomal subunit protein L28 [Salmonella typhimurium LT2] 9101.921114163819 2 78 M.SRVCQVTGKRPVTGNNRSHALNATKRRFLPNLHSHRFWVESEKRFVTLRVSAKGMRIIDKKGIETVLSELRARGEKY. 0 38.0 26.0 5.717454047550129E-15 5.717454047550129E-15 0.0
/home/xiaowen/c_project/proteomics_cpp/testcases/data/st_no_digestion.msalign 629 1038 1390 191 14 11527.332767648437 11527.287767648437 6614 gi|39546367|ref|NP_462331.2| 30S ribosomal subunit protein S14 [Salmonella typhimurium LT2] 11113.053682523194 2 96 M.KA(RE)[545.27]VKRVALADKYFAKRAELKAIISDVNATDEDRWNAVLKLQTLPRDSSPSRQRNRCRQTGRPHAFLRKFGLSRIKVREAAMRGEIPGLKKASW. 1 45.0 34.0 3.1333688300250015E-15 5.792294657461698E-15 0.0
/home/xiaowen/c_project/proteomics_cpp/testcases/data/st_no_digestion.msalign 1669 2297 3068 179 16 10947.9375809375 10947.867208676758 6236 gi|16766528|ref|NP_462143.1| putative inner membrane protein [Salmonella typhimurium LT2] 11078.90770550293 2 101 M.SKDNTTEHLRAELKSLTDTLEEVLSSSGEKSKEELSKIRSKAERALKESRYRLGETGDVIAKQTRVAAARADDYVRENPWTGVGIGAAVGLVLGVLLTRR. 0 38.0 29.0 6.076932801928713E-15 6.076932801928713E-15 0.0
/home/xiaowen/c_project/proteomics_cpp/testcases/data/st_no_digestion.msalign 17 389 524 75 9 4532.518406152344 4532.5140401892095 6598 gi|16766708|ref|NP_462323.1| 50S ribosomal subunit protein X [Salmonella typhimurium LT2] 4532.514040189209 1 38 .MKVRASVKKLCRNCKIVKRDGVIRVICSAEPKHKQRQG. 0 20.0 18.0 3.046775401080848E-15 6.093550802161696E-15 0.0
/home/xiaowen/c_project/proteomics_cpp/testcases/data/st_no_digestion.msalign 720 1135 1519 108 10 6509.645123343751 6509.614042478027 6604 gi|16766711|ref|NP_462326.1| 50S ribosomal subunit protein L30 [Salmonella typhimurium LT2] 6509.614042478027 1 59 .MAKTIKITQTRSAIGRLPKHKATLLGLGLRRIGHTVEREDTPAVRGMVNAVSFMVKVEE. 0 34.0 23.0 3.163875708576949E-15 6.327751417153898E-15 0.0
/home/xiaowen/c_project/proteomics_cpp/testcases/data/st_no_digestion.msalign 289 689 924 45 5 4629.264247992189 4629.250951962891 3864 gi|16765337|ref|NP_460952.1| putative endoprotease [Salmonella typhimurium LT2] 16651.30049343628 2 47 M.ALTDTAGGTQTDPGTGKPSENPPAAPNKPTPPKEETPPGAPEKYAF.T 0 23.0 19.0 9.471048636552058E-17 6.4403130728554E-15 0.0
/home/xiaowen/c_project/proteomics_cpp/testcases/data/st_no_digestion.msalign 438 845 1132 130 9 7825.921094101564 7825.921094101564 7898 gi|16767362|ref|NP_462977.1| 50S ribosomal subunit protein L31 [Salmonella typhimurium LT2] 7941.9762403540035 1 70 .MKKGIHPNYVEITAT(CSCGNVIKTHSTVGHDLNLDVCGK)[-116.06]CHPFFTGKQRVVDTGGRVERFNKRFSIPGSK. 1 40.0 31.0 3.240865364829873E-14 6.9441071614257096E-15 0.0
/home/xiaowen/c_project/proteomics_cpp/testcases/data/st_no_digestion.msalign 1426 1970 2632 181 13 16293.830172382815 16293.735172382814 1592 gi|16764195|ref|NP_459810.1| outer membrane protease precursor [Salmonella typhimurium LT2] 18539.917421536866 1 171 .(M)[42.01](KKIACLSALAAVLAFSAGTAVAATSTV)[-2288.19]TGGYAQSDAQGVANKMSGFNLKYRYEQDDNPLGVIGSFTYTEKDRTNGAGDYNKGQYYGITAGPAYRLNDWASIYGVVGVGYGKFQTTDYPTYKHDTSDYGFSYGAGLQFNPMENVALDFSYEQSRIRSVDVGTWIAGVGYRF. 1 38.0 34.0 6.225981698838318E-16 7.319530970990366E-15 0.0
/home/xiaowen/c_project/proteomics_cpp/testcases/data/st_no_digestion.msalign 1204 1689 2258 92 11 9782.907552722658 9782.877552722655 4144 gi|16765477|ref|NP_461092.1| putative periplasmic protein [Salmonella typhimurium LT2] 11884.955469327393 21 104 A.PATTGIDQYELKSFIADFTHFKPGDTVP(QMYRTDEYNI)[71.10]KQWKLRNLPAPDAGTHWTYMGGAYVLINDTDGKIIKAYDGEIFYHR. 1 41.0 27.0 3.321646662286064E-16 7.660027646019973E-15 0.0
/home/xiaowen/c_project/proteomics_cpp/testcases/data/st_no_digestion.msalign 667 1082 1448 144 13 8970.92052106641 8970.880617337645 7206 gi|16767013|ref|NP_462628.1| 50S ribosomal subunit protein L28 [Salmonella typhimurium LT2] 9101.921114163819 2 78 M.SRVCQVTGKRPVTGNNRSHALNATKRRFLPNLHSHRFWVESEKRFVTLRVSAKGMRIIDKKGIETVLSELRARGEKY. 0 29.0 25.0 7.917647616955278E-15 7.917647616955278E-15 0.0
/home/xiaowen/c_project/proteomics_cpp/testcases/data/st_no_digestion.msalign 461 868 1163 130 12 7825.948704578126 7825.948704578126 7898 gi|16767362|ref|NP_462977.1| 50S ribosomal subunit protein L31 [Salmonella typhimurium LT2] 7941.9762403540035 1 70 .MKKGIHPNYVEITAT(CSCGNV)[-116.03]IKTHSTVGHDLNLDVCGKCHPFFTGKQRVVDTGGRVERFNKRFSIPGSK. 1 44.0 28.0 4.220334900476097E-14 8.907820825048752E-15 0.0
/home/xiaowen/c_project/proteomics_cpp/testcases/data/st_no_digestion.msalign 139 524 704 74 9 4461.540964642579 4461.535964642579 7204 gi|16767012|ref|NP_462627.1| 50S ribosomal subunit protein L33 [Salmonella typhimurium LT2] 6367.619703488769 2 40 M.(A)[14.03]KGIREKIKLVSSAGTGHFYTTTKNKRTKPEKLELKKFD.P 1 27.0 20.0 2.5764746049481425E-16 9.025926617884326E-15 0.0
/home/xiaowen/c_project/proteomics_cpp/testcases/data/st_no_digestion.msalign 564 971 1300 51 5 3110.6507251250005 3110.6345579199224 7986 gi|16767406|ref|NP_463021.1| 50S ribosomal subunit protein L7/L12 [Salmonella typhimurium LT2] 12291.470907407227 92 121 A.PAALKEGVSKDDAEALKKSLEEAGAEVEVK. 0 25.0 21.0 3.811217572016877E-16 9.146922172840505E-15 0.0
/home/xiaowen/c_project/proteomics_cpp/testcases/data/st_no_digestion.msalign 166 553 743 104 10 6250.611026250001 6250.611026250001 7204 gi|16767012|ref|NP_462627.1| 50S ribosomal subunit protein L33 [Salmonella typhimurium LT2] 6367.619703488769 2 55 M.(A)[14.03]KGIREKIKLVSSAGTGHFYTTTKNKRTKPEKLELKKFDPVVRQHVIYKEAKIK. 1 31.0 22.0 7.577511840879613E-14 9.19432526480356E-15 0.0
/home/xiaowen/c_project/proteomics_cpp/testcases/data/st_no_digestion.msalign 208 605 812 104 11 6250.613760015624 6250.608760015625 7204 gi|16767012|ref|NP_462627.1| 50S ribosomal subunit protein L33 [Salmonella typhimurium LT2] 6367.619703488769 2 55 M.(A)[14.03]KGIREKIKLVSSAGTGHFYTTTKNKRTKPEKLELKKFDPVVRQHVIYKEAKIK. 1 29.0 21.0 7.63130267197611E-14 9.438624468316764E-15 0.0
/home/xiaowen/c_project/proteomics_cpp/testcases/data/st_no_digestion.msalign 18 390 526 75 7 4532.526976707031 4532.5140401892095 6598 gi|16766708|ref|NP_462323.1| 50S ribosomal subunit protein X [Salmonella typhimurium LT2] 4532.514040189209 1 38 .MKVRASVKKLCRNCKIVKRDGVIRVICSAEPKHKQRQG. 0 30.0 23.0 4.831417899216623E-15 9.662835798433246E-15 0.0
/home/xiaowen/c_project/proteomics_cpp/testcases/data/st_no_digestion.msalign 1795 2530 3379 111 7 8795.478682398438 8795.422834592286 816 gi|16763804|ref|NP_459419.1| exonuclease VII small subunit [Salmonella typhimurium LT2] 8926.463331418458 2 80 M.PKKNEAPASFETALSELEHIVTRLESGDLPLEDALNEFERGVQLARQGQAKLQQAEQRVQILLSDNEEASPEPFIADNE. 0 33.0 28.0 9.98635405126088E-15 9.98635405126088E-15 0.0
/home/xiaowen/c_project/proteomics_cpp/testcases/data/st_no_digestion.msalign 32 404 544 75 5 4532.529626851564 4532.514040189209 6598 gi|16766708|ref|NP_462323.1| 50S ribosomal subunit protein X [Salmonella typhimurium LT2] 4532.514040189209 1 38 .MKVRASVKKLCRNCKIVKRDGVIRVICSAEPKHKQRQG. 0 20.0 18.0 5.064226863937576E-15 1.0128453727875152E-14 0.0
/home/xiaowen/c_project/proteomics_cpp/testcases/data/st_no_digestion.msalign 451 858 1150 134 13 8094.042785378906 8094.042785378906 7898 gi|16767362|ref|NP_462977.1| 50S ribosomal subunit protein L31 [Salmonella typhimurium LT2] 7941.9762403540035 1 70 .MKKGIHPNYVEITATCS(CGNV)[152.07]IKTHSTVGHDLNLDVCGKCHPFFTGKQRVVDTGGRVERFNKRFSIPGSK. 1 40.0 29.0 4.2287836226632405E-14 1.0664417124377208E-14 0.0
/home/xiaowen/c_project/proteomics_cpp/testcases/data/st_no_digestion.msalign 933 1356 1814 150 12 9169.758986859375 9169.690111356202 7154 gi|16766987|ref|NP_462602.1| glutaredoxin 3 [Salmonella typhimurium LT2] 9300.730608182374 2 83 M.ANIEIYTKATCPFCHRAKALLNSKGVSFQEIAIDGDAVKREEMIKRSGRTTVPQIFIDAQHIGGCDDLYALDARGGLDPLLR. 0 39.0 29.0 1.0815102027583908E-14 1.0815102027583908E-14 0.0
/home/xiaowen/c_project/proteomics_cpp/testcases/data/st_no_digestion.msalign 19 391 527 75 6 4532.528698507813 4532.5140401892095 6598 gi|16766708|ref|NP_462323.1| 50S ribosomal subunit protein X [Salmonella typhimurium LT2] 4532.514040189209 1 38 .MKVRASVKKLCRNCKIVKRDGVIRVICSAEPKHKQRQG. 0 21.0 20.0 5.451239374754103E-15 1.0902478749508207E-14 0.0
/home/xiaowen/c_project/proteomics_cpp/testcases/data/st_no_digestion.msalign 172 559 751 104 13 6250.622218269531 6250.592218269531 7204 gi|16767012|ref|NP_462627.1| 50S ribosomal subunit protein L33 [Salmonella typhimurium LT2] 6367.619703488769 1 55 .MAKGIREKIK(LV)[-117.03]SSAGTGHFYTTTKNKRTKPEKLELKKFDPVVRQHVIYKEAKIK. 1 24.0 20.0 8.433814261829585E-14 1.1085825560191088E-14 0.0
/home/xiaowen/c_project/proteomics_cpp/testcases/data/st_no_digestion.msalign 27 399 538 75 10 4532.528952417969 4532.514040189209 6598 gi|16766708|ref|NP_462323.1| 50S ribosomal subunit protein X [Salmonella typhimurium LT2] 4532.514040189209 1 38 .MKVRASVKKLCRNCKIVKRDGVIRVICSAEPKHKQRQG. 0 22.0 17.0 5.686076287478431E-15 1.1372152574956861E-14 0.0
/home/xiaowen/c_project/proteomics_cpp/testcases/data/st_no_digestion.msalign 963 1389 1858 92 8 6851.6864508125 6851.6541196875 5446 gi|16766132|ref|NP_461747.1| carbon storage regulator [Salmonella typhimurium LT2] 6851.6541196875 1 61 .MLILTRRVGETLMIGDEVTVTVLGVKGNQVRIGVNAPKEVSVHREEIYQRIQAEKSQQSSY. 0 32.0 25.0 6.284328217843355E-15 1.256865643568671E-14 0.0
/home/xiaowen/c_project/proteomics_cpp/testcases/data/st_no_digestion.msalign 375 777 1042 150 10 9043.934221390627 9043.934221390627 6376 gi|16766598|ref|NP_462213.1| 50S ribosomal subunit protein L27 [Salmonella typhimurium LT2] 9175.939195828858 2 85 M.AHKKAGGSTRNGRDSEAKRLGVKRFGGEAVLAGSIIVRQRGTKFHA(GTNVGCGR)[-.96]DHTLFAKADGKVKFEVKGPKNRKYISIVAE. 1 38.0 32.0 1.0971156383605196E-13 1.2813029353115557E-14 0.0
/home/xiaowen/c_project/proteomics_cpp/testcases/data/st_no_digestion.msalign 760 1176 1574 171 17 10277.697982027346 10277.687982027346 6632 gi|16766725|ref|NP_462340.1| 30S ribosomal subunit protein S19 [Salmonella typhimurium LT2] 10409.699133115235 2 92 M.PRSLKKGPFIDLHLLKKVEKAVESGDKKPLRTWSRRSTIFPN(M)[-.97]IGLTIAVHNGRQHVPVFVSDEMVGHKLGEFAPTRTYRGHAADKKAKKK. 1 38.0 25.0 7.405598895258253E-14 1.2847753703012875E-14 0.0
/home/xiaowen/c_project/proteomics_cpp/testcases/data/st_no_digestion.msalign 1256 1745 2332 120 7 7256.043631398437 7255.987646298828 6624 gi|16766721|ref|NP_462336.1| 50S ribosomal subunit protein L29 [Salmonella typhimurium LT2] 7255.987646298828 1 63 .MKAKELREKSVEELNTELLNLLREQFNLRMQAASGQLQQSHLLKQVRRDVARVKTLLTEKAGA. 0 33.0 29.0 6.7104653610992205E-15 1.3420930722198441E-14 0.0
/home/xiaowen/c_project/proteomics_cpp/testcases/data/st_no_digestion.msalign 1328 1829 2444 158 16 9515.243743875 9515.17277355713 8022 gi|16767424|ref|NP_463039.1| DNA-binding protein HU-alpha [Salmonella typhimurium LT2] 9515.17277355713 1 90 .MNKTQLIDVIADKAELSKTQAKAALESTLAAITESLKEGDAVQLVGFGTFKVNHRAERTGRNPQTGKEIKIAAANVPAFVSGKALKDAVK. 0 47.0 27.0 6.9522306687997486E-15 1.3904461337599497E-14 0.0
/home/xiaowen/c_project/proteomics_cpp/testcases/data/st_no_digestion.msalign 529 936 1254 65 10 7079.475938960936 7079.475938960936 748 gi|16763769|ref|NP_459384.1| putative cytoplasmic protein [Salmonella typhimurium LT2] 7222.519148068847 2 63 M.PTRPPYPREAYIVTIEKGTPGQTVTWYQLRADHPK(PDSLISEH)[-12.00]PTAEEAMDAKNRYEDPDKS. 1 19.0 18.0 2.620967718398775E-13 1.5277970791564904E-14 0.0
/home/xiaowen/c_project/proteomics_cpp/testcases/data/st_no_digestion.msalign 185 574 771 104 10 6250.605533085938 6250.605533085938 7204 gi|16767012|ref|NP_462627.1| 50S ribosomal subunit protein L33 [Salmonella typhimurium LT2] 6367.619703488769 2 55 M.(A)[14.03]KGIREKIKLVSSAGTGHFYTTTKNKRTKPEKLELKKFDPVVRQHVIYKEAKIK. 1 26.0 22.0 1.2595937420405211E-13 1.5550540025191618E-14 0.0
/home/xiaowen/c_project/proteomics_cpp/testcases/data/st_no_digestion.msalign 29 401 540 75 7 4532.523985984375 4532.5140401892095 6598 gi|16766708|ref|NP_462323.1| 50S ribosomal subunit protein X [Salmonella typhimurium LT2] 4532.514040189209 1 38 .MKVRASVKKLCRNCKIVKRDGVIRVICSAEPKHKQRQG. 0 29.0 21.0 7.797033223875473E-15 1.5594066447750946E-14 0.0
/home/xiaowen/c_project/proteomics_cpp/testcases/data/st_no_digestion.msalign 207 604 811 104 10 6250.615298710938 6250.605298710938 7204 gi|16767012|ref|NP_462627.1| 50S ribosomal subunit protein L33 [Salmonella typhimurium LT2] 6367.619703488769 2 55 M.(A)[14.03]KGIREKIKLVSSAGTGHFYTTTKNKRTKPEKLELKKFDPVVRQHVIYKEAKIK. 1 25.0 21.0 1.2999906540599014E-13 1.578815413959092E-14 0.0
/home/xiaowen/c_project/proteomics_cpp/testcases/data/st_no_digestion.msalign 636 1045 1399 177 13 11527.32875214453 11527.30875214453 6614 gi|39546367|ref|NP_462331.2| 30S ribosomal subunit protein S14 [Salmonella typhimurium LT2] 11113.053682523194 2 96 M.KA(REVKRVALAD)[545.30]KYFAKRAELKAIISDVNATDEDRWNAVLKLQTLPRDSSPSRQRNRCRQTGRPHAFLRKFGLSRIKVREAAMRGEIPGLKKASW. 1 40.0 33.0 8.727596017634432E-15 1.61336920508731E-14 0.0
/home/xiaowen/c_project/proteomics_cpp/testcases/data/st_no_digestion.msalign 340 740 992 160 14 9628.7606966875 9628.722135739748 738 gi|16763764|ref|NP_459379.1| phosphate starvation-inducible protein [Salmonella typhimurium LT2] 11830.048254208985 22 106 A.TEKPLTPQQQRMTTCNQQATAQALKGDARKTYLSDCLKNSQSAPGEKSLTPQQQKMRECNVQATEQSLKGDDRSKFMSACLKKAA. 0 38.0 29.0 7.337023918373562E-16 1.6141452620421837E-14 0.0
/home/xiaowen/c_project/proteomics_cpp/testcases/data/st_no_digestion.msalign 477 884 1184 130 13 7825.963340199219 7825.9533401992185 7898 gi|16767362|ref|NP_462977.1| 50S ribosomal subunit protein L31 [Salmonella typhimurium LT2] 7941.9762403540035 1 70 .MKKGIHPNYVEITATCSCGNVIKTHSTVGHDLNLDV(CGKCH)[-116.02]PFFTGKQRVVDTGGRVERFNKRFSIPGSK. 1 38.0 23.0 7.857625137209818E-14 1.6585014811210386E-14 0.0
/home/xiaowen/c_project/proteomics_cpp/testcases/data/st_no_digestion.msalign 1183 1663 2223 46 14 12217.8537358125 12217.8187358125 6630 gi|16766724|ref|NP_462339.1| 50S ribosomal subunit protein L22 [Salmonella typhimurium LT2] 12218.769315915528 1 110 .METIAKHRHARSSAQKVRLVADLIRGKKVSQALDIL(TYTNKKAAVLV)[-.95]KKVLESAIANAEHNDGADIDDLKVTKIFVDEGPSMKRIMPRAKGRADRILKRTSHITVVVSDR. 1 20.0 19.0 7.431994946656135E-14 1.6789080543914582E-14 0.0
/home/xiaowen/c_project/proteomics_cpp/testcases/data/st_no_digestion.msalign 1872 2672 3568 80 13 12291.595131671875 12291.470907407227 7986 gi|16767406|ref|NP_463021.1| 50S ribosomal subunit protein L7/L12 [Salmonella typhimurium LT2] 12291.470907407227 1 121 .MSITKDQIIEAVSAMSVMDVVELISAMEEKFGVSAAAAVAVAAGPAEAAEEKTEFDVILKAAGANKVAVIKAVRGATGLGLKEAKDLVESAPAALKEGVSKDDAEALKKSLEEAGAEVEVK. 0 28.0 21.0 8.83668969225579E-15 1.767337938451158E-14 0.0
/home/xiaowen/c_project/proteomics_cpp/testcases/data/st_no_digestion.msalign 700 1115 1492 52 9 7655.990093828125 7655.959249692384 702 gi|16763746|ref|NP_459361.1| putative periplasmic protein [Salmonella typhimurium LT2] 9913.159528928223 22 91 A.AEIMKKTDFDKVASEYTKIGTISTTGEMSPLDAREDLIKKADEKGADVVVLTSGQTENKIHGTADIYKKK. 0 19.0 15.0 6.709766199348306E-16 1.8787345358175257E-14 0.0
/home/xiaowen/c_project/proteomics_cpp/testcases/data/st_no_digestion.msalign 52 425 572 72 5 4416.470382714845 4416.480382714845 6598 gi|16766708|ref|NP_462323.1| 50S ribosomal subunit protein X [Salmonella typhimurium LT2] 4532.514040189209 1 38 .MKVRASVKKL(CRNCKIVK)[-116.03]RDGVIRVICSAEPKHKQRQG. 1 21.0 18.0 3.910899071811674E-13 1.8913824645688884E-14 0.0
/home/xiaowen/c_project/proteomics_cpp/testcases/data/st_no_digestion.msalign 1537 2128 2843 95 7 10088.907721093748 10088.85857220215 2412 gi|16764601|ref|NP_460216.1| putative periplasmic protein [Salmonella typhimurium LT2] 12681.31208630127 25 114 A.ASQEISKSIYTCNDNQVMEVIYVNTEAGNAYAIISQVNEMIPMRLMKMASGANYEAIDKNYTYKLYTKGKTAELVEGDDKPVLSNCSLAN. 0 34.0 29.0 7.609504188069207E-16 1.902376047017302E-14 0.0
/home/xiaowen/c_project/proteomics_cpp/testcases/data/st_no_digestion.msalign 855 1275 1706 153 14 9699.292178828126 9699.242078977051 6622 gi|16766720|ref|NP_462335.1| 30S ribosomal subunit protein S17 [Salmonella typhimurium LT2] 9830.282575803223 2 84 M.TDKIRTLQGRVVSDKMEKSIVVAIERFVKHPIYGKFIKRTTKMHVHDENNECGIGDVVEIRECRPLSKTKSWTLVRVVEKAVL. 0 36.0 24.0 1.9804446239696386E-14 1.9804446239696386E-14 0.0
/home/xiaowen/c_project/proteomics_cpp/testcases/data/st_no_digestion.msalign 837 1255 1679 88 10 10405.1766644375 10405.1766644375 1966 gi|16764378|ref|NP_459993.1| hypothetical protein STM1018 [Phage Gifsy-2] 11265.5324689917 8 96 L.MYQRMIFEEGKEPRLYSSQHDSKFIPISNNNGKVQKV(PVMELKD)[33.04]TRGDVFYAYNYAYSGKKPSNDEIYKAIDELKPIGEKFEMSKTISD. 1 28.0 25.0 8.69655614779716E-16 2.080508962938994E-14 0.0
/home/xiaowen/c_project/proteomics_cpp/testcases/data/st_no_digestion.msalign 404 810 1086 129 9 7825.957348984377 7825.957348984377 7898 gi|16767362|ref|NP_462977.1| 50S ribosomal subunit protein L31 [Salmonella typhimurium LT2] 7941.9762403540035 1 70 .MKKGIHPNYVEITATCSCGNVIK(THSTVGHDLNLDVCGKCH)[-116.02]PFFTGKQRVVDTGGRVERFNKRFSIPGSK. 1 42.0 31.0 1.0517376488514149E-13 2.2198926748371468E-14 0.0
/home/xiaowen/c_project/proteomics_cpp/testcases/data/st_no_digestion.msalign 436 843 1130 130 9 7825.921094101564 7825.921094101564 7898 gi|16767362|ref|NP_462977.1| 50S ribosomal subunit protein L31 [Salmonella typhimurium LT2] 7941.9762403540035 1 70 .MKKGIHPNYVEITATCSCGNVIKTHSTVGHDL(NLDVC)[-116.06]GKCHPFFTGKQRVVDTGGRVERFNKRFSIPGSK. 1 39.0 29.0 1.0523362232882103E-13 2.254809960223988E-14 0.0
/home/xiaowen/c_project/proteomics_cpp/testcases/data/st_no_digestion.msalign 1566 2159 2884 149 15 9233.084490933592 9233.084490933592 870 gi|16763832|ref|NP_459447.1| DNA-binding protein HU-beta [Salmonella typhimurium LT2] 9234.010030942383 1 90 .MNKSQLIEKIAAGADISKAAAGRALDAIIASVTESLKEGDD(V)[-.93]ALVGFGTFAVKERAARTGRNPQTGKEITIAAAKVPSFRAGKALKDAVN. 1 51.0 28.0 1.5378082599551277E-13 2.3087103123183515E-14 0.0
/home/xiaowen/c_project/proteomics_cpp/testcases/data/st_no_digestion.msalign 262 662 888 47 5 2823.5035183281248 2823.499983029786 354 gi|16763570|ref|NP_459185.1| aspartate 1-decarboxylase [Salmonella typhimurium LT2] 13992.038381772461 1 24 .MIRTMLQGKLHRVKVTQADLHYEG.S 0 23.0 20.0 2.9362249285647586E-16 2.4957911892800447E-14 0.0
/home/xiaowen/c_project/proteomics_cpp/testcases/data/st_no_digestion.msalign 1936 2866 3827 78 9 9972.992058046875 9972.923879819336 4604 gi|16765707|ref|NP_461322.1| putative cytoplasmic protein [Salmonella typhimurium LT2] 9972.923879819336 1 91 .MIAEFESRILALIDDMVEHASDDELFASGYLRGHLTLAIAELESGDDHSVEAVYANVSQSLEKAIGAGELSPRDQALVKAMWDNLFDKAKQ. 0 28.0 23.0 1.2795091427131659E-14 2.5590182854263318E-14 0.0
/home/xiaowen/c_project/proteomics_cpp/testcases/data/st_no_digestion.msalign 1547 2139 2858 116 10 9234.069662437501 9234.010030942383 870 gi|16763832|ref|NP_459447.1| DNA-binding protein HU-beta [Salmonella typhimurium LT2] 9234.010030942383 1 90 .MNKSQLIEKIAAGADISKAAAGRALDAIIASVTESLKEGDDVALVGFGTFAVKERAARTGRNPQTGKEITIAAAKVPSFRAGKALKDAVN. 0 24.0 24.0 1.5273357471694004E-14 3.054671494338801E-14 0.0
/home/xiaowen/c_project/proteomics_cpp/testcases/data/st_no_digestion.msalign 368 770 1032 150 10 9043.970232132815 9043.930232132812 6376 gi|16766598|ref|NP_462213.1| 50S ribosomal subunit protein L27 [Salmonella typhimurium LT2] 9175.939195828858 2 85 M.AHKKAGGSTRNGRDSEAKRLGVKRFGGEAVLA(GSIIVRQRGTK)[-.97]FHAGTNVGCGRDHTLFAKADGKVKFEVKGPKNRKYISIVAE. 1 37.0 30.0 2.791246959082595E-13 3.2658099704074234E-14 0.0
/home/xiaowen/c_project/proteomics_cpp/testcases/data/st_no_digestion.msalign 1841 2628 3510 116 16 12160.54133325 12160.430410581055 7986 gi|16767406|ref|NP_463021.1| 50S ribosomal subunit protein L7/L12 [Salmonella typhimurium LT2] 12291.470907407227 2 121 M.SITKDQIIEAVSAMSVMDVVELISAMEEKFGVSAAAAVAVAAGPAEAAEEKTEFDVILKAAGANKVAVIKAVRGATGLGLKEAKDLVESAPAALKEGVSKDDAEALKKSLEEAGAEVEVK. 0 28.0 22.0 3.668580829564143E-14 3.668580829564143E-14 0.0
/home/xiaowen/c_project/proteomics_cpp/testcases/data/st_no_digestion.msalign 677 1092 1462 102 9 6378.606921710939 6378.573545651855 6604 gi|16766711|ref|NP_462326.1| 50S ribosomal subunit protein L30 [Salmonella typhimurium LT2] 6509.614042478027 2 59 M.AKTIKITQTRSAIGRLPKHKATLLGLGLRRIGHTVEREDTPAVRGMVNAVSFMVKVEE. 0 36.0 23.0 4.1298286357355256E-14 4.1298286357355256E-14 0.0
/home/xiaowen/c_project/proteomics_cpp/testcases/data/st_no_digestion.msalign 100 482 648 89 8 5365.8757292499995 5365.83616467041 3026 gi|16764909|ref|NP_460524.1| 30S ribosomal subunit protein S22 [Salmonella typhimurium LT2] 5365.83616467041 1 47 .MKSNRQARHILGLDYRISNQRKVVTEGDTSSVVNNPTGRKRRADSQK. 0 27.0 21.0 2.2733639656175523E-14 4.5467279312351045E-14 0.0
/home/xiaowen/c_project/proteomics_cpp/testcases/data/st_no_digestion.msalign 16 388 523 75 8 4532.51744240625 4532.514040189209 6598 gi|16766708|ref|NP_462323.1| 50S ribosomal subunit protein X [Salmonella typhimurium LT2] 4532.514040189209 1 38 .MKVRASVKKLCRNCKIVKRDGVIRVICSAEPKHKQRQG. 0 22.0 18.0 2.3696008788093292E-14 4.7392017576186583E-14 0.0
/home/xiaowen/c_project/proteomics_cpp/testcases/data/st_no_digestion.msalign 856 1276 1707 148 14 9699.292178828126 9699.242078977051 6622 gi|16766720|ref|NP_462335.1| 30S ribosomal subunit protein S17 [Salmonella typhimurium LT2] 9830.282575803223 2 84 M.TDKIRTLQGRVVSDKMEKSIVVAIERFVKHPIYGKFIKRTTKMHVHDENNECGIGDVVEIRECRPLSKTKSWTLVRVVEKAVL. 0 42.0 24.0 5.4419111387084926E-14 5.4419111387084926E-14 0.0
/home/xiaowen/c_project/proteomics_cpp/testcases/data/st_no_digestion.msalign 251 649 871 47 5 2823.5093166679685 2823.499983029786 354 gi|16763570|ref|NP_459185.1| aspartate 1-decarboxylase [Salmonella typhimurium LT2] 13992.038381772461 1 24 .MIRTMLQGKLHRVKVTQADLHYEG.S 0 21.0 20.0 7.463710115625215E-16 5.89633099134392E-14 0.0
/home/xiaowen/c_project/proteomics_cpp/testcases/data/st_no_digestion.msalign 323 723 970 113 10 8420.735488851566 8420.707170682374 6198 gi|16766509|ref|NP_462124.1| 30S ribosomal subunit protein S21 [Salmonella typhimurium LT2] 8551.747667508545 2 71 M.PVIKVRENEPFDVALRRFKRSCEKAGVLAEVRRREFYEKPTTERKRAKASAVKRHAKKLARENARRTRLY. 0 24.0 19.0 6.132483886616762E-14 6.132483886616762E-14 0.0
/home/xiaowen/c_project/proteomics_cpp/testcases/data/st_no_digestion.msalign 256 654 878 47 5 2823.506264910156 2823.499983029786 354 gi|16763570|ref|NP_459185.1| aspartate 1-decarboxylase [Salmonella typhimurium LT2] 13992.038381772461 1 24 .MIRTMLQGKLHRVKVTQADLHYEG.S 0 22.0 20.0 7.744515282010814E-16 6.195612225608651E-14 0.0
/home/xiaowen/c_project/proteomics_cpp/testcases/data/st_no_digestion.msalign 377 779 1044 150 9 9044.941375320312 9044.898699002686 6376 gi|16766598|ref|NP_462213.1| 50S ribosomal subunit protein L27 [Salmonella typhimurium LT2] 9175.939195828858 2 85 M.AHKKAGGSTRNGRDSEAKRLGVKRFGGEAVLAGSIIVRQRGTKFHAGTNVGCGRDHTLFAKADGKVKFEVKGPKNRKYISIVAE. 0 34.0 27.0 6.626261247746055E-14 6.626261247746055E-14 0.0
/home/xiaowen/c_project/proteomics_cpp/testcases/data/st_no_digestion.msalign 167 554 744 104 12 6250.6160055 6250.611005500001 7204 gi|16767012|ref|NP_462627.1| 50S ribosomal subunit protein L33 [Salmonella typhimurium LT2] 6367.619703488769 2 55 M.(AKGIREKIKL)[14.03]VSSAGTGHFYTTTKNKRTKPEKLELKKFDPVVRQHVIYKEAKIK. 1 26.0 20.0 5.67980797856262E-13 6.901188052815655E-14 0.0
/home/xiaowen/c_project/proteomics_cpp/testcases/data/st_no_digestion.msalign 671 1086 1454 140 12 8970.921144234379 8970.880617337647 7206 gi|16767013|ref|NP_462628.1| 50S ribosomal subunit protein L28 [Salmonella typhimurium LT2] 9101.921114163819 2 78 M.SRVCQVTGKRPVTGNNRSHALNATKRRFLPNLHSHRFWVESEKRFVTLRVSAKGMRIIDKKGIETVLSELRARGEKY. 0 32.0 25.0 6.935232179089111E-14 6.935232179089111E-14 0.0
/home/xiaowen/c_project/proteomics_cpp/testcases/data/st_no_digestion.msalign 930 1353 1810 151 12 9169.750197796875 9169.690111356202 7154 gi|16766987|ref|NP_462602.1| glutaredoxin 3 [Salmonella typhimurium LT2] 9300.730608182374 2 83 M.ANIEIYTKATCPFCHRAKALLNSKGVSFQEIAIDGDAVKREEMIKRSGRTTVPQIFIDAQHIGGCDDLYALDARGGLDPLLR. 0 41.0 29.0 6.986680074213612E-14 6.986680074213612E-14 0.0
/home/xiaowen/c_project/proteomics_cpp/testcases/data/st_no_digestion.msalign 94 474 638 184 12 11064.95933071875 11064.865835385743 1452 gi|16764124|ref|NP_459739.1| hypothetical protein STM0759 [Salmonella typhimurium LT2] 13436.224081235352 25 128 A.AESNAQSSNGQANSAANAGQVAPDARQNVAPNDVNNNDINTNGNTNSTMQHPDGSTMNHDGMTKDEEHKNTMCKDGRCPDINKKVETGNGVNNDVNTKTDGTTQ. 0 34.0 28.0 2.1404421587467135E-15 7.063459123864154E-14 0.0
/home/xiaowen/c_project/proteomics_cpp/testcases/data/st_no_digestion.msalign 20 392 528 75 7 4532.526976707031 4532.5140401892095 6598 gi|16766708|ref|NP_462323.1| 50S ribosomal subunit protein X [Salmonella typhimurium LT2] 4532.514040189209 1 38 .MKVRASVKKLCRNCKIVKRDGVIRVICSAEPKHKQRQG. 0 27.0 20.0 3.533874295149882E-14 7.067748590299764E-14 0.0
/home/xiaowen/c_project/proteomics_cpp/testcases/data/st_no_digestion.msalign 58 431 580 105 11 6327.400245039062 6327.400245039062 2302 gi|16764546|ref|NP_460161.1| 50S ribosomal subunit protein L32 [Salmonella typhimurium LT2] 6442.431486325683 2 57 M.(AV)[16.01]QQNKPTRSKRGMRRSHDALTAVTSLSVDKTSGEKHLRHHITADGYYRGRKVIAK. 1 36.0 24.0 3.628066525083404E-13 7.130685799981941E-14 0.0
/home/xiaowen/c_project/proteomics_cpp/testcases/data/st_no_digestion.msalign 178 565 759 104 11 6250.608388921874 6250.608388921874 7204 gi|16767012|ref|NP_462627.1| 50S ribosomal subunit protein L33 [Salmonella typhimurium LT2] 6367.619703488769 2 55 M.(A)[14.03]KGIREKIKLVSSAGTGHFYTTTKNKRTKPEKLELKKFDPVVRQHVIYKEAKIK. 1 27.0 20.0 6.114231128906945E-13 7.412036821410524E-14 0.0
/home/xiaowen/c_project/proteomics_cpp/testcases/data/st_no_digestion.msalign 175 562 755 104 13 6250.613886970703 6250.613886970703 7204 gi|16767012|ref|NP_462627.1| 50S ribosomal subunit protein L33 [Salmonella typhimurium LT2] 6367.619703488769 1 55 .MAKGIREKIK(LV)[-117.01]SSAGTGHFYTTTKNKRTKPEKLELKKFDPVVRQHVIYKEAKIK. 1 23.0 19.0 5.744055125841397E-13 7.692730138510996E-14 0.0
/home/xiaowen/c_project/proteomics_cpp/testcases/data/st_no_digestion.msalign 260 659 884 47 4 2823.5032259687496 2823.4999830297857 354 gi|16763570|ref|NP_459185.1| aspartate 1-decarboxylase [Salmonella typhimurium LT2] 13992.038381772461 1 24 .MIRTMLQGKLHRVKVTQADLHYEG.S 0 25.0 20.0 9.35506762985053E-16 7.951807485372951E-14 0.0
/home/xiaowen/c_project/proteomics_cpp/testcases/data/st_no_digestion.msalign 1184 1664 2224 62 12 12217.840455781252 12217.810455781251 6630 gi|16766724|ref|NP_462339.1| 50S ribosomal subunit protein L22 [Salmonella typhimurium LT2] 12218.769315915528 1 110 .METIAKHRHARSSAQKVRLVADLIRGKKVSQALDI(L)[-.96]TYTNKKAAVLVKKVLESAIANAEHNDGADIDDLKVTKIFVDEGPSMKRIMPRAKGRADRILKRTSHITVVVSDR. 1 20.0 19.0 3.5040820688108195E-13 7.988039281190175E-14 0.0
/home/xiaowen/c_project/proteomics_cpp/testcases/data/st_no_digestion.msalign 1771 2472 3302 29 8 8095.21093028125 8095.153410153809 4302 gi|16765556|ref|NP_461171.1| putative cytoplasmic protein [Salmonella typhimurium LT2] 8226.193906979981 2 75 M.PQLSRYSDEHVEQLLSELLSVLEKHKAPTDLSLMVLGNMVTNLINTSVAPAQRQAIANSFARALQSSISEDNAH. 0 12.0 12.0 8.307731849212092E-14 8.307731849212092E-14 0.0
/home/xiaowen/c_project/proteomics_cpp/testcases/data/st_no_digestion.msalign 661 1075 1439 92 11 8970.927992988285 8970.880617337647 7206 gi|16767013|ref|NP_462628.1| 50S ribosomal subunit protein L28 [Salmonella typhimurium LT2] 9101.921114163819 2 78 M.SRVCQVTGKRPVTGNNRSHALNATKRRFLPNLHSHRFWVESEKRFVTLRVSAKGMRIIDKKGIETVLSELRARGEKY. 0 23.0 18.0 1.0002171681685521E-13 1.0002171681685521E-13 0.0
/home/xiaowen/c_project/proteomics_cpp/testcases/data/st_no_digestion.msalign 180 567 762 104 12 6250.616737921875 6250.611737921876 7204 gi|16767012|ref|NP_462627.1| 50S ribosomal subunit protein L33 [Salmonella typhimurium LT2] 6367.619703488769 2 55 M.(AKGIREKIKL)[14.03]VSSAGTGHFYTTTKNKRTKPEKLELKKFDPVVRQHVIYKEAKIK. 1 24.0 19.0 8.200318232922461E-13 1.0151700701004423E-13 0.0
/home/xiaowen/c_project/proteomics_cpp/testcases/data/st_no_digestion.msalign 699 1114 1491 106 12 6378.6030380468765 6378.573545651856 6604 gi|16766711|ref|NP_462326.1| 50S ribosomal subunit protein L30 [Salmonella typhimurium LT2] 6509.614042478027 2 59 M.AKTIKITQTRSAIGRLPKHKATLLGLGLRRIGHTVEREDTPAVRGMVNAVSFMVKVEE. 0 37.0 20.0 1.0551099304207779E-13 1.0551099304207779E-13 0.0
/home/xiaowen/c_project/proteomics_cpp/testcases/data/st_no_digestion.msalign 640 1050 1406 148 13 8970.923694894534 8970.880617337645 7206 gi|16767013|ref|NP_462628.1| 50S ribosomal subunit protein L28 [Salmonella typhimurium LT2] 9101.921114163819 2 78 M.SRVCQVTGKRPVTGNNRSHALNATKRRFLPNLHSHRFWVESEKRFVTLRVSAKGMRIIDKKGIETVLSELRARGEKY. 0 29.0 25.0 1.0812674724913115E-13 1.0812674724913115E-13 0.0
/home/xiaowen/c_project/proteomics_cpp/testcases/data/st_no_digestion.msalign 47 420 566 73 10 4416.467572050781 4416.467572050781 6598 gi|16766708|ref|NP_462323.1| 50S ribosomal subunit protein X [Salmonella typhimurium LT2] 4532.514040189209 1 38 .MKVRASVK(KLCRNCK)[-116.05]IVKRDGVIRVICSAEPKHKQRQG. 1 24.0 17.0 2.2470813533091507E-12 1.0867297237972071E-13 0.0
/home/xiaowen/c_project/proteomics_cpp/testcases/data/st_no_digestion.msalign 300 700 939 140 16 8420.730285 8420.707170682374 6198 gi|16766509|ref|NP_462124.1| 30S ribosomal subunit protein S21 [Salmonella typhimurium LT2] 8551.747667508545 2 71 M.PVIKVRENEPFDVALRRFKRSCEKAGVLAEVRRREFYEKPTTERKRAKASAVKRHAKKLARENARRTRLY. 0 33.0 21.0 1.0878288397965143E-13 1.0878288397965143E-13 0.0
/home/xiaowen/c_project/proteomics_cpp/testcases/data/st_no_digestion.msalign 177 564 758 104 10 6250.607364140626 6250.607364140626 7204 gi|16767012|ref|NP_462627.1| 50S ribosomal subunit protein L33 [Salmonella typhimurium LT2] 6367.619703488769 2 55 M.(A)[14.03]KGIREKIKLVSSAGTGHFYTTTKNKRTKPEKLELKKFDPVVRQHVIYKEAKIK. 1 22.0 19.0 9.27816303309367E-13 1.1247544390529839E-13 0.0
/home/xiaowen/c_project/proteomics_cpp/testcases/data/st_no_digestion.msalign 1029 1461 1954 72 15 10534.644958144532 10534.58869 4296 gi|16765553|ref|NP_461168.1| 50S ribosomal subunit protein L25 [Salmonella typhimurium LT2] 10534.58869 1 94 .MFTINAEVRKEQGKGASRRLRAANKFPAIIYGGSEAPIAIELDHDQVMNMQAKAEFYSEVLTLVVDGKEVKVKAQAVQRHAYKPKLTHIDFVRA. 0 26.0 17.0 5.6532105688592304E-14 1.1306421137718461E-13 0.0
/home/xiaowen/c_project/proteomics_cpp/testcases/data/st_no_digestion.msalign 378 781 1047 150 8 9044.9455995625 9044.898699002686 6376 gi|16766598|ref|NP_462213.1| 50S ribosomal subunit protein L27 [Salmonella typhimurium LT2] 9175.939195828858 2 85 M.AHKKAGGSTRNGRDSEAKRLGVKRFGGEAVLAGSIIVRQRGTKFHAGTNVGCGRDHTLFAKADGKVKFEVKGPKNRKYISIVAE. 0 29.0 26.0 1.1340796299607344E-13 1.1340796299607344E-13 0.0
/home/xiaowen/c_project/proteomics_cpp/testcases/data/st_no_digestion.msalign 1282 1774 2371 114 12 7256.024707453127 7255.987646298827 6624 gi|16766721|ref|NP_462336.1| 50S ribosomal subunit protein L29 [Salmonella typhimurium LT2] 7255.987646298828 1 63 .MKAKELREKSVEELNTELLNLLREQFNLRMQAASGQLQQSHLLKQVRRDVARVKTLLTEKAGA. 0 37.0 24.0 5.99642946897502E-14 1.199285893795004E-13 0.0
/home/xiaowen/c_project/proteomics_cpp/testcases/data/st_no_digestion.msalign 1002 1432 1915 106 12 8113.338076281251 8113.281858640137 1836 gi|16764314|ref|NP_459929.1| protein chain initiation factor IF-1 [Salmonella typhimurium LT2] 8244.32235546631 2 72 M.AKEDNIEMQGTVLETLPNTMFRVELENGHVVTAHISGKMRKNYIRILTGDKVTVELTPYDLSKGRIVFRSR. 0 28.0 23.0 6.616530236769578E-14 1.3233060473539155E-13 0.0
/home/xiaowen/c_project/proteomics_cpp/testcases/data/st_no_digestion.msalign 457 864 1158 130 13 7825.957786 7825.957786 7898 gi|16767362|ref|NP_462977.1| 50S ribosomal subunit protein L31 [Salmonella typhimurium LT2] 7941.9762403540035 1 70 .MKKGIHPNYVEITAT(CSC)[-116.02]GNVIKTHSTVGHDLNLDVCGKCHPFFTGKQRVVDTGGRVERFNKRFSIPGSK. 1 40.0 25.0 6.30193050517531E-13 1.350296165545656E-13 0.0
/home/xiaowen/c_project/proteomics_cpp/testcases/data/st_no_digestion.msalign 22 394 531 75 7 4532.526976707031 4532.5140401892095 6598 gi|16766708|ref|NP_462323.1| 50S ribosomal subunit protein X [Salmonella typhimurium LT2] 4532.514040189209 1 38 .MKVRASVKKLCRNCKIVKRDGVIRVICSAEPKHKQRQG. 0 29.0 22.0 6.784193083250097E-14 1.3568386166500193E-13 0.0
/home/xiaowen/c_project/proteomics_cpp/testcases/data/st_no_digestion.msalign 361 763 1023 143 12 9044.927970171877 9044.898699002684 6376 gi|16766598|ref|NP_462213.1| 50S ribosomal subunit protein L27 [Salmonella typhimurium LT2] 9175.939195828858 2 85 M.AHKKAGGSTRNGRDSEAKRLGVKRFGGEAVLAGSIIVRQRGTKFHAGTNVGCGRDHTLFAKADGKVKFEVKGPKNRKYISIVAE. 0 32.0 24.0 1.4703873137613007E-13 1.4703873137613007E-13 0.0
/home/xiaowen/c_project/proteomics_cpp/testcases/data/st_no_digestion.msalign 1887 2726 3640 60 11 12217.51667709375 12217.51667709375 7986 gi|16767406|ref|NP_463021.1| 50S ribosomal subunit protein L7/L12 [Salmonella typhimurium LT2] 12291.470907407227 2 121 M.(SITKDQI)[42.01]IEAVS(A)[15.08]MSVMDVVELISAMEEKFGVSAAAAVAVAAGPAEAAEEKTEFDVILKAAGANKVAVIKAVRGATGLGLKEAKDLVESAPAALKEGVSKDDAEALKKSLEEAGAEVEVK. 1 29.0 22.0 6.206556154852412E-13 1.5206641549178974E-13 0.0
/home/xiaowen/c_project/proteomics_cpp/testcases/data/st_no_digestion.msalign 1281 1773 2370 94 12 14041.5688978125 14041.5688978125 6612 gi|16766715|ref|NP_462330.1| 30S ribosomal subunit protein S8 [Salmonella typhimurium LT2] 14174.542101102295 2 130 M.SMQDPIADMLTRIRNGQAANKAAVTMPSSKLKVAIANVLKEEGFIEDFKVE(GD)[-1.93]TKPELELTLKYFQGKAVVESIQRVSRPGLRIYKRKDELPKVMAGLGIAVVSTSKGVMTDRAARQAGLGGEIICYVA. 1 22.0 22.0 6.469740904246878E-13 1.5216660350449072E-13 0.0
/home/xiaowen/c_project/proteomics_cpp/testcases/data/st_no_digestion.msalign 1414 1956 2614 86 11 9113.842035488282 9113.737188535159 4692 gi|16765751|ref|NP_461366.1| phosphohistidinoprotein-hexose phosphotransferase [Salmonella typhimurium LT2] 9113.737188535157 1 85 .MFQQEVTITAPNGLHTRPAAQFVKEAKGFTSEITVTSNGKSASAKSLFKLQTLGLTQGTVVTISAEGEDEQKAVEHLVKLMAELE. 0 23.0 19.0 8.335547763760805E-14 1.667109552752161E-13 0.0
/home/xiaowen/c_project/proteomics_cpp/testcases/data/st_no_digestion.msalign 682 1097 1468 106 9 6378.615710773439 6378.573545651855 6604 gi|16766711|ref|NP_462326.1| 50S ribosomal subunit protein L30 [Salmonella typhimurium LT2] 6509.614042478027 2 59 M.AKTIKITQTRSAIGRLPKHKATLLGLGLRRIGHTVEREDTPAVRGMVNAVSFMVKVEE. 0 34.0 22.0 1.6916533376017936E-13 1.6916533376017936E-13 0.0
/home/xiaowen/c_project/proteomics_cpp/testcases/data/st_no_digestion.msalign 664 1079 1444 78 12 11177.30506025 11177.30506025 6618 gi|16766718|ref|NP_462333.1| 50S ribosomal subunit protein L24 [Salmonella typhimurium LT2] 11309.309614377442 2 104 M.AAKIRRDDEVIVLTGKDKGKRGKVKNVLSSGKVIVEGINLVKKHQKPVPALNQPGGIVEKEA(A)[-.96]IQVSNVAIFNAATGKADRVGFRFEDGKKVRFFKSNSETIK. 1 24.0 21.0 1.5592313489161054E-12 1.8301610876721553E-13 0.0
/home/xiaowen/c_project/proteomics_cpp/testcases/data/st_no_digestion.msalign 632 1041 1394 160 13 11527.323991402343 11527.278991402343 6614 gi|39546367|ref|NP_462331.2| 30S ribosomal subunit protein S14 [Salmonella typhimurium LT2] 11113.053682523194 1 96 .(MKARE)[414.23]VKRVALADKYFAKRAELKAIISDVNATDEDRWNAVLKLQTLPRDSSPSRQRNRCRQTGRPHAFLRKFGLSRIKVREAAMRGEIPGLKKASW. 1 38.0 33.0 1.0036545428938591E-15 1.8373896904326574E-13 0.0
/home/xiaowen/c_project/proteomics_cpp/testcases/data/st_no_digestion.msalign 485 892 1195 66 10 7825.924438218752 7825.924438218752 7898 gi|16767362|ref|NP_462977.1| 50S ribosomal subunit protein L31 [Salmonella typhimurium LT2] 7941.9762403540035 1 70 .MKKGIHPNYVEITATCSCGNVIKTHSTVGHDLNL(DVCGKC)[-116.05]HPFFTGKQRVVDTGGRVERFNKRFSIPGSK. 1 26.0 21.0 9.543912134536603E-13 2.0144244774240555E-13 0.0
/home/xiaowen/c_project/proteomics_cpp/testcases/data/st_no_digestion.msalign 1060 1501 2007 183 9 11759.480549843745 11759.412664609375 6642 gi|16766730|ref|NP_462345.1| 30S ribosomal subunit protein S10 [Salmonella typhimurium LT2] 11759.412664609375 1 103 .MQNQRIRIRLKAFDHRLIDQSTAEIVETAKRTGAQVRGPIPLPTRKERFTVLISPHVNKDARDQYEIRTHKRLVDIVEPTEKTVDALMRLDLAAGVDVQISLG. 0 40.0 29.0 1.0139616194118811E-13 2.0279232388237622E-13 0.0
/home/xiaowen/c_project/proteomics_cpp/testcases/data/st_no_digestion.msalign 308 708 950 140 14 8420.733850671875 8420.707170682374 6198 gi|16766509|ref|NP_462124.1| 30S ribosomal subunit protein S21 [Salmonella typhimurium LT2] 8551.747667508545 2 71 M.PVIKVRENEPFDVALRRFKRSCEKAGVLAEVRRREFYEKPTTERKRAKASAVKRHAKKLARENARRTRLY. 0 27.0 21.0 2.0713601428963896E-13 2.0713601428963896E-13 0.0
/home/xiaowen/c_project/proteomics_cpp/testcases/data/st_no_digestion.msalign 1310 1811 2420 83 13 9531.219299226563 9531.219299226563 8022 gi|16767424|ref|NP_463039.1| DNA-binding protein HU-alpha [Salmonella typhimurium LT2] 9515.17277355713 1 90 .MNKTQLIDVIADKAELSKTQAKAALESTLAAITESLKEGDA(V)[16.05]QLVGFGTFKVNHRAERTGRNPQTGKEIKIAAANVPAFVSGKALKDAVK. 1 22.0 20.0 7.079035372268685E-13 2.1276507055798275E-13 0.0
/home/xiaowen/c_project/proteomics_cpp/testcases/data/st_no_digestion.msalign 687 1102 1475 106 10 6378.621252156249 6378.573545651855 6604 gi|16766711|ref|NP_462326.1| 50S ribosomal subunit protein L30 [Salmonella typhimurium LT2] 6509.614042478027 2 59 M.AKTIKITQTRSAIGRLPKHKATLLGLGLRRIGHTVEREDTPAVRGMVNAVSFMVKVEE. 0 35.0 22.0 2.1563697402561888E-13 2.1563697402561888E-13 0.0
/home/xiaowen/c_project/proteomics_cpp/testcases/data/st_no_digestion.msalign 143 530 712 27 5 3075.304970964845 3075.292478757328 1850 gi|16764321|ref|NP_459936.1| cell division protein [Salmonella typhimurium LT2] 148381.19957180542 212 236 W.VDDEEYDDEYDEETDGVQRESRRAR.I 0 12.0 12.0 9.46488319159786E-17 2.2381451514527214E-13 0.0
/home/xiaowen/c_project/proteomics_cpp/testcases/data/st_no_digestion.msalign 903 1324 1771 61 13 8323.098704617187 8323.048940854495 8154 gi|16767490|ref|NP_463105.1| putative cytoplasmic protein [Salmonella typhimurium LT2] 8454.089437680665 2 70 M.MNKDEAGGNWKQFKGKMKEQWGKLTDDDMTVIEGKRDQLVGKIQERYGYQKDQAEKEVVDWETRNNYRW. 0 19.0 16.0 1.2159299705810825E-13 2.431859941162165E-13 0.0
/home/xiaowen/c_project/proteomics_cpp/testcases/data/st_no_digestion.msalign 1497 2074 2771 51 8 8375.33148375 8375.250936704102 2828 gi|39546317|ref|NP_460424.2| putative cytoplasmic protein [Salmonella typhimurium LT2] 9025.52433605713 6 76 Y.MTVQDYLLKFRKISSLESLEKLFDHLNYTLTDDMDIVNMYRAADHRRAELVSGGRLFDVGQVPQSVWRYVQ. 0 22.0 20.0 4.942771018313668E-15 2.471385509156834E-13 0.0
/home/xiaowen/c_project/proteomics_cpp/testcases/data/st_no_digestion.msalign 460 867 1162 130 12 7825.948704578126 7825.948704578126 7898 gi|16767362|ref|NP_462977.1| 50S ribosomal subunit protein L31 [Salmonella typhimurium LT2] 7941.9762403540035 1 70 .MKKGIHPNYVEITAT(CSCGNVIK)[-116.03]THSTVGHDLNLDVCGKCHPFFTGKQRVVDTGGRVERFNKRFSIPGSK. 1 39.0 26.0 1.3767249565537312E-12 2.905840301197472E-13 0.0
/home/xiaowen/c_project/proteomics_cpp/testcases/data/st_no_digestion.msalign 293 693 930 140 14 8420.734705164063 8420.707170682374 6198 gi|16766509|ref|NP_462124.1| 30S ribosomal subunit protein S21 [Salmonella typhimurium LT2] 8551.747667508545 2 71 M.PVIKVRENEPFDVALRRFKRSCEKAGVLAEVRRREFYEKPTTERKRAKASAVKRHAKKLARENARRTRLY. 0 26.0 21.0 2.982924730625136E-13 2.982924730625136E-13 0.0
/home/xiaowen/c_project/proteomics_cpp/testcases/data/st_no_digestion.msalign 1264 1753 2343 68 8 7256.02866496875 7255.987646298828 6624 gi|16766721|ref|NP_462336.1| 50S ribosomal subunit protein L29 [Salmonella typhimurium LT2] 7255.987646298828 1 63 .MKAKELREKSVEELNTELLNLLREQFNLRMQAASGQLQQSHLLKQVRRDVARVKTLLTEKAGA. 0 21.0 20.0 1.6605048576641383E-13 3.3210097153282766E-13 0.0
/home/xiaowen/c_project/proteomics_cpp/testcases/data/st_no_digestion.msalign 310 710 952 140 11 8420.73071529297 8420.707170682374 6198 gi|16766509|ref|NP_462124.1| 30S ribosomal subunit protein S21 [Salmonella typhimurium LT2] 8551.747667508545 2 71 M.PVIKVRENEPFDVALRRFKRSCEKAGVLAEVRRREFYEKPTTERKRAKASAVKRHAKKLARENARRTRLY. 0 26.0 23.0 3.378156320528462E-13 3.378156320528462E-13 0.0
/home/xiaowen/c_project/proteomics_cpp/testcases/data/st_no_digestion.msalign 556 963 1290 58 5 4152.926543542971 4152.910238461911 2072 gi|16764429|ref|NP_460044.1| putative hydrogenase membrane component precurosr [Salmonella typhimurium LT2] 37605.86566753906 22 59 A.APKDNTWYAGAKLGWSQYHDTGFIHNDGPTHENQLGAG.A 0 23.0 20.0 1.1720136868954677E-16 3.5381262366257096E-13 0.0
/home/xiaowen/c_project/proteomics_cpp/testcases/data/st_no_digestion.msalign 706 1121 1500 47 9 6509.640863699219 6509.614042478027 6604 gi|16766711|ref|NP_462326.1| 50S ribosomal subunit protein L30 [Salmonella typhimurium LT2] 6509.614042478027 1 59 .MAKTIKITQTRSAIGRLPKHKATLLGLGLRRIGHTVEREDTPAVRGMVNAVSFMVKVEE. 0 23.0 17.0 1.8598537497006777E-13 3.7197074994013554E-13 0.0
/home/xiaowen/c_project/proteomics_cpp/testcases/data/st_no_digestion.msalign 258 656 880 47 5 2823.506264910156 2823.499983029786 354 gi|16763570|ref|NP_459185.1| aspartate 1-decarboxylase [Salmonella typhimurium LT2] 13992.038381772461 1 24 .MIRTMLQGKLHRVKVTQADLHYEG.S 0 22.0 20.0 4.781971544216575E-15 3.82557723537326E-13 0.0
/home/xiaowen/c_project/proteomics_cpp/testcases/data/st_no_digestion.msalign 701 1116 1494 106 10 6378.607214070312 6378.573545651855 6604 gi|16766711|ref|NP_462326.1| 50S ribosomal subunit protein L30 [Salmonella typhimurium LT2] 6509.614042478027 2 59 M.AKTIKITQTRSAIGRLPKHKATLLGLGLRRIGHTVEREDTPAVRGMVNAVSFMVKVEE. 0 34.0 21.0 3.871588650383236E-13 3.871588650383236E-13 0.0
/home/xiaowen/c_project/proteomics_cpp/testcases/data/st_no_digestion.msalign 447 854 1144 134 14 8094.0000479531245 8094.0000479531245 7898 gi|16767362|ref|NP_462977.1| 50S ribosomal subunit protein L31 [Salmonella typhimurium LT2] 7941.9762403540035 1 70 .MKKGIHPNYVEITA(TCSCGN)[152.02]VIKTHSTVGHDLNLDVCGKCHPFFTGKQRVVDTGGRVERFNKRFSIPGSK. 1 25.0 21.0 1.575470324897691E-12 3.9155403976050174E-13 0.0
/home/xiaowen/c_project/proteomics_cpp/testcases/data/st_no_digestion.msalign 242 640 859 50 8 4375.341046874999 4375.323522763672 6632 gi|16766725|ref|NP_462340.1| 30S ribosomal subunit protein S19 [Salmonella typhimurium LT2] 10409.699133115235 54 92 N.GRQHVPVFVSDEMVGHKLGEFAPTRTYRGHAADKKAKKK. 0 21.0 18.0 1.0725918557906414E-14 4.1831082375835013E-13 0.0
/home/xiaowen/c_project/proteomics_cpp/testcases/data/st_no_digestion.msalign 647 1057 1415 149 15 8970.926049632815 8970.880617337647 7206 gi|16767013|ref|NP_462628.1| 50S ribosomal subunit protein L28 [Salmonella typhimurium LT2] 9101.921114163819 2 78 M.SRVCQVTGKRPVTGNNRSHALNATKRRFLPNLHSHRFWVESEKRFVTLRVSAKGMRIIDKKGIETVLSELRARGEKY. 0 29.0 24.0 4.2061980188366536E-13 4.2061980188366536E-13 0.0
/home/xiaowen/c_project/proteomics_cpp/testcases/data/st_no_digestion.msalign 41 414 558 73 7 4416.466023585937 4416.466023585937 6598 gi|16766708|ref|NP_462323.1| 50S ribosomal subunit protein X [Salmonella typhimurium LT2] 4532.514040189209 1 38 .MKVRASVK(KLCRNCK)[-116.05]IVKRDGVIRVICSAEPKHKQRQG. 1 25.0 20.0 8.78918063690642E-12 4.2506088317110416E-13 0.0
/home/xiaowen/c_project/proteomics_cpp/testcases/data/st_no_digestion.msalign 557 964 1291 51 5 4152.926543542971 4152.910238461911 2072 gi|16764429|ref|NP_460044.1| putative hydrogenase membrane component precurosr [Salmonella typhimurium LT2] 37605.86566753906 22 59 A.APKDNTWYAGAKLGWSQYHDTGFIHNDGPTHENQLGAG.A 0 20.0 17.0 1.4119403008712557E-16 4.262427204493346E-13 0.0
/home/xiaowen/c_project/proteomics_cpp/testcases/data/st_no_digestion.msalign 756 1172 1568 133 19 10277.71022446094 10277.71022446094 6632 gi|16766725|ref|NP_462340.1| 30S ribosomal subunit protein S19 [Salmonella typhimurium LT2] 10409.699133115235 2 92 M.PRSLKKGPFIDLHLLKKVEKAVESGDKKPLRTWSRRSTIFPN(M)[-.95]IGLTIAVHNGRQHVPVFVSDEMVGHKLGEFAPTRTYRGHAADKKAKKK. 1 29.0 22.0 2.4456209178359345E-12 4.2946457294177737E-13 0.0
/home/xiaowen/c_project/proteomics_cpp/testcases/data/st_no_digestion.msalign 107 491 660 87 10 5365.866914554688 5365.83616467041 3026 gi|16764909|ref|NP_460524.1| 30S ribosomal subunit protein S22 [Salmonella typhimurium LT2] 5365.83616467041 1 47 .MKSNRQARHILGLDYRISNQRKVVTEGDTSSVVNNPTGRKRRADSQK. 0 24.0 17.0 2.2032015425884296E-13 4.406403085176859E-13 0.0
/home/xiaowen/c_project/proteomics_cpp/testcases/data/st_no_digestion.msalign 861 1281 1714 149 11 8948.887047398437 8948.887047398437 8452 gi|16767639|ref|NP_463254.1| 30S ribosomal subunit protein S18 [Salmonella typhimurium LT2] 9122.931947904053 2 75 M.(ARYFR)[42.01]RRKFCRFTAEGVQEIDYKDIATLKNYITES(GKIVPSRITGTRAKY)[-85.02]QRQLRRAIKRARYLSLLPYTDRHQ. 1 33.0 27.0 2.833050252963397E-12 4.5069573107938127E-13 0.0
/home/xiaowen/c_project/proteomics_cpp/testcases/data/st_no_digestion.msalign 644 1054 1411 145 13 8970.923694894534 8970.880617337645 7206 gi|16767013|ref|NP_462628.1| 50S ribosomal subunit protein L28 [Salmonella typhimurium LT2] 9101.921114163819 2 78 M.SRVCQVTGKRPVTGNNRSHALNATKRRFLPNLHSHRFWVESEKRFVTLRVSAKGMRIIDKKGIETVLSELRARGEKY. 0 28.0 24.0 4.528934521199003E-13 4.528934521199003E-13 0.0
/home/xiaowen/c_project/proteomics_cpp/testcases/data/st_no_digestion.msalign 1272 1763 2356 84 10 10098.435697781253 10098.435697781253 7232 gi|16767026|ref|NP_462641.1| RNA polymerase omega subunit [Salmonella typhimurium LT2] 10230.389227109375 2 91 M.ARVTVQDAVEKIGNRFDLVLVAARRARQMQVGGKD(PL)[-.91]VPEENDKTTVIALREIEEGLINNQILDVRERQEQQEQEAAELQAVTAIAEGRR. 1 25.0 22.0 2.6591863412509894E-12 4.571116736453213E-13 0.0
/home/xiaowen/c_project/proteomics_cpp/testcases/data/st_no_digestion.msalign 1775 2476 3307 24 9 8095.218546859375 8095.15341015381 4302 gi|16765556|ref|NP_461171.1| putative cytoplasmic protein [Salmonella typhimurium LT2] 8226.193906979981 2 75 M.PQLSRYSDEHVEQLLSELLSVLEKHKAPTDLSLMVLGNMVTNLINTSVAPAQRQAIANSFARALQSSISEDNAH. 0 16.0 12.0 4.741021784263844E-13 4.741021784263844E-13 0.0
/home/xiaowen/c_project/proteomics_cpp/testcases/data/st_no_digestion.msalign 303 703 943 140 11 8420.723330039064 8420.707170682374 6198 gi|16766509|ref|NP_462124.1| 30S ribosomal subunit protein S21 [Salmonella typhimurium LT2] 8551.747667508545 2 71 M.PVIKVRENEPFDVALRRFKRSCEKAGVLAEVRRREFYEKPTTERKRAKASAVKRHAKKLARENARRTRLY. 0 23.0 21.0 4.972547893093672E-13 4.972547893093672E-13 0.0
/home/xiaowen/c_project/proteomics_cpp/testcases/data/st_no_digestion.msalign 1902 2756 3680 112 15 12202.578934722656 12202.440977292481 7986 gi|16767406|ref|NP_463021.1| 50S ribosomal subunit protein L7/L12 [Salmonella typhimurium LT2] 12291.470907407227 2 121 M.(S)[42.01]ITKDQIIEAVSAMSVMDVVELISAMEEKFGVSAAAAVAVAAGPAEAAEEKTEFDVILKAAGANKVAVIKAVRGATGLGLKEAKDLVESAPAALKEGVSKDDAEALKKSLEEAGAEVEVK. 0 24.0 20.0 5.334307948243657E-13 5.334307948243657E-13 0.0
/home/xiaowen/c_project/proteomics_cpp/testcases/data/st_no_digestion.msalign 1482 2051 2740 17 8 9387.850798 9387.79499645752 3320 gi|16765059|ref|NP_460674.1| putative cytoplasmic protein [Salmonella typhimurium LT2] 9387.79499645752 1 83 .MHKETQPIDRETLLLEANKIIREHEDTMAGIVATGVTQRNGVLVFSGDYFLDEQGLPTPKSTAVFNMFKHLAHVLSEKYHLVD. 0 10.0 10.0 2.7776516674122604E-13 5.555303334824521E-13 0.0
/home/xiaowen/c_project/proteomics_cpp/testcases/data/st_no_digestion.msalign 928 1351 1807 104 11 9169.745694011719 9169.690111356203 7154 gi|16766987|ref|NP_462602.1| glutaredoxin 3 [Salmonella typhimurium LT2] 9300.730608182374 2 83 M.ANIEIYTKATCPFCHRAKALLNSKGVSFQEIAIDGDAVKREEMIKRSGRTTVPQIFIDAQHIGGCDDLYALDARGGLDPLLR. 0 27.0 23.0 5.58582414841451E-13 5.58582414841451E-13 0.0
/home/xiaowen/c_project/proteomics_cpp/testcases/data/st_no_digestion.msalign 82 458 616 184 11 11079.909233671875 11079.909233671875 1452 gi|16764124|ref|NP_459739.1| hypothetical protein STM0759 [Salmonella typhimurium LT2] 13436.224081235352 25 128 A.AESNAQSSNGQANSAANAGQVAPDARQNVAPNDVNNNDINTN(GN)[15.04]TNSTMQHPDGSTMNHDGMTKDEEHKNTMCKDGRCPDINKKVETGNGVNNDVNTKTDGTTQ. 1 40.0 32.0 2.1800716183972558E-14 5.7376433698923E-13 0.0
/home/xiaowen/c_project/proteomics_cpp/testcases/data/st_no_digestion.msalign 839 1257 1682 53 13 8906.863942476562 8906.863942476562 8452 gi|16767639|ref|NP_463254.1| 30S ribosomal subunit protein S18 [Salmonella typhimurium LT2] 9122.931947904053 2 75 M.ARYFRRRKFCRFTAEGVQEIDYKDIATLKNYITE(SGKIVPSRITGTRAKYQRQLRRAIKRARYLSLL)[-85.03]PYTDRHQ. 1 21.0 17.0 2.2059695751384056E-12 6.182243411855055E-13 0.0
/home/xiaowen/c_project/proteomics_cpp/testcases/data/st_no_digestion.msalign 878 1299 1738 109 12 10060.484379203124 10060.428564267579 6342 gi|16766581|ref|NP_462196.1| 30S ribosomal subunit protein S15 [Salmonella typhimurium LT2] 10191.46906109375 2 89 M.SLSTEATAKIVSEFGRDANDTGSTDVQVALLTAQINHLQGHFAEHKKDHHSRRGLLRMVSQRRKLLDYLKRKDVARYTALIERLGLRR. 0 27.0 21.0 6.462847993727588E-13 6.462847993727588E-13 0.0
/home/xiaowen/c_project/proteomics_cpp/testcases/data/st_no_digestion.msalign 1650 2277 3042 182 15 11211.768012496093 11211.739576535645 4466 gi|16765638|ref|NP_461253.1| putative inner membrane protein [Salmonella typhimurium LT2] 11629.921674924317 4 103 M.SYQFGESRVDDDLTLLSETLEEVLRSSGDPADQKYIELKARAEQALEEVKNRVSHASDSYYYRAKQAVYKADDYVHEKPWQGIGVGAAVGLVLGLLLARR. 0 38.0 30.0 1.899812702647458E-14 6.649344459266103E-13 0.0
/home/xiaowen/c_project/proteomics_cpp/testcases/data/st_no_digestion.msalign 437 844 1131 130 10 7825.925658921877 7825.925658921877 7898 gi|16767362|ref|NP_462977.1| 50S ribosomal subunit protein L31 [Salmonella typhimurium LT2] 7941.9762403540035 1 70 .MKKGIHPNYVEITAT(CSCGNVIKTHSTVGHDLNLDVCGK)[-116.05]CHPFFTGKQRVVDTGGRVERFNKRFSIPGSK. 1 35.0 27.0 3.216930107416623E-12 6.892821787396406E-13 0.0
/home/xiaowen/c_project/proteomics_cpp/testcases/data/st_no_digestion.msalign 517 924 1238 101 9 6394.599163246094 6394.594163246094 6604 gi|16766711|ref|NP_462326.1| 50S ribosomal subunit protein L30 [Salmonella typhimurium LT2] 6509.614042478027 2 59 M.AKTIKITQTRSAIGRLPKHKATLLGLGLRRIGHTVERED(TPAVRGMVN)[16.02]AVSFMVKVEE. 1 33.0 24.0 3.284374980601658E-12 8.286267152894092E-13 0.0
/home/xiaowen/c_project/proteomics_cpp/testcases/data/st_no_digestion.msalign 1565 2158 2883 84 9 9233.078891562498 9233.043891562498 870 gi|16763832|ref|NP_459447.1| DNA-binding protein HU-beta [Salmonella typhimurium LT2] 9234.010030942383 1 90 .MNKSQLIEKIAAGADISKAAAGRALDAIIASVTESLKEGDDVALV(GFGTFAVKER)[-.97]AARTGRNPQTGKEITIAAAKVPSFRAGKALKDAVN. 1 29.0 26.0 5.724720795965516E-12 8.592038139028482E-13 0.0
/home/xiaowen/c_project/proteomics_cpp/testcases/data/st_no_digestion.msalign 305 705 946 140 16 8420.73419125 8420.707170682374 6198 gi|16766509|ref|NP_462124.1| 30S ribosomal subunit protein S21 [Salmonella typhimurium LT2] 8551.747667508545 2 71 M.PVIKVRENEPFDVALRRFKRSCEKAGVLAEVRRREFYEKPTTERKRAKASAVKRHAKKLARENARRTRLY. 0 31.0 19.0 8.80492370815393E-13 8.80492370815393E-13 0.0
/home/xiaowen/c_project/proteomics_cpp/testcases/data/st_no_digestion.msalign 1478 2047 2735 47 9 9387.833390164062 9387.794996457518 3320 gi|16765059|ref|NP_460674.1| putative cytoplasmic protein [Salmonella typhimurium LT2] 9387.79499645752 1 83 .MHKETQPIDRETLLLEANKIIREHEDTMAGIVATGVTQRNGVLVFSGDYFLDEQGLPTPKSTAVFNMFKHLAHVLSEKYHLVD. 0 21.0 15.0 4.443713438861514E-13 8.887426877723028E-13 0.0
/home/xiaowen/c_project/proteomics_cpp/testcases/data/st_no_digestion.msalign 794 1211 1620 91 14 9518.352778296876 9518.289663510743 86 gi|16763433|ref|NP_459048.1| 30S ribosomal subunit protein S20 [Salmonella typhimurium LT2] 9649.330160336915 2 87 M.ANIKSAKKRAVQSEKARKHNASRRSMMRTFIKKVYAAIEAGDKAAALKAFNEMQPIVDRQAAKGLIHKNKAARHKANLTAQINKLA. 0 23.0 18.0 8.980761225276153E-13 8.980761225276153E-13 0.0
/home/xiaowen/c_project/proteomics_cpp/testcases/data/st_no_digestion.msalign 223 621 834 94 10 6367.640417195312 6367.61970348877 7204 gi|16767012|ref|NP_462627.1| 50S ribosomal subunit protein L33 [Salmonella typhimurium LT2] 6367.619703488769 1 55 .MAKGIREKIKLVSSAGTGHFYTTTKNKRTKPEKLELKKFDPVVRQHVIYKEAKIK. 0 21.0 17.0 4.494433431726878E-13 8.988866863453756E-13 0.0
/home/xiaowen/c_project/proteomics_cpp/testcases/data/st_no_digestion.msalign 261 661 887 47 4 2823.5039583906246 2823.4999830297857 354 gi|16763570|ref|NP_459185.1| aspartate 1-decarboxylase [Salmonella typhimurium LT2] 13992.038381772461 1 24 .MIRTMLQGKLHRVKVTQADLHYEG.S 0 23.0 20.0 1.128610531788202E-14 9.028884254305615E-13 0.0
/home/xiaowen/c_project/proteomics_cpp/testcases/data/st_no_digestion.msalign 831 1249 1671 52 14 10406.176979382813 10406.196979382814 1966 gi|16764378|ref|NP_459993.1| hypothetical protein STM1018 [Phage Gifsy-2] 11265.5324689917 8 96 L.MYQRMIFEEGKEPRLYSSQHDSKFIPI(SNNNG)[34.06]KVQKVPVMELKDTRGDVFYAYNYAYSGKKPSNDEIYKAIDELKPIGEKFEMSKTISD. 1 24.0 21.0 4.0302279023618163E-14 9.491241692707402E-13 0.0
/home/xiaowen/c_project/proteomics_cpp/testcases/data/st_no_digestion.msalign 371 773 1036 150 9 9043.935027664062 9043.935027664062 6376 gi|16766598|ref|NP_462213.1| 50S ribosomal subunit protein L27 [Salmonella typhimurium LT2] 9175.939195828858 2 85 M.AHKKAGGSTRNGRDSE(AKRLGV)[-300.15]KRFGGEAVLAGSIIVRQRGTKFHAG(TNV)[299.19]GCGRDHTLFAKADGKVKFEVKGPKNRKYISIVAE. 2 42.0 36.0 5.557329390030155E-14 9.668490078607534E-13 0.0
/home/xiaowen/c_project/proteomics_cpp/testcases/data/st_no_digestion.msalign 91 470 632 184 13 11064.954740265624 11064.865835385743 1452 gi|16764124|ref|NP_459739.1| hypothetical protein STM0759 [Salmonella typhimurium LT2] 13436.224081235352 25 128 A.AESNAQSSNGQANSAANAGQVAPDARQNVAPNDVNNNDINTNGNTNSTMQHPDGSTMNHDGMTKDEEHKNTMCKDGRCPDINKKVETGNGVNNDVNTKTDGTTQ. 0 34.0 24.0 3.297314040418815E-14 1.0551404929340208E-12 0.0
/home/xiaowen/c_project/proteomics_cpp/testcases/data/st_no_digestion.msalign 573 980 1312 70 5 4958.551395808594 4958.534132199705 2072 gi|16764429|ref|NP_460044.1| putative hydrogenase membrane component precurosr [Salmonella typhimurium LT2] 37605.86566753906 306 350 G.ESNPVTGNTCDNVKPRAALIDCLAPDRRVEIEVKGVKDVVTQPQA. 0 17.0 16.0 2.359277418880156E-14 1.1324531610624749E-12 0.0
/home/xiaowen/c_project/proteomics_cpp/testcases/data/st_no_digestion.msalign 882 1303 1743 95 12 10059.49487725 10059.454877249998 6342 gi|16766581|ref|NP_462196.1| 30S ribosomal subunit protein S15 [Salmonella typhimurium LT2] 10191.46906109375 2 89 M.SLSTEATAKIV(SE)[-.97]FGRDANDTGSTDVQVALLTAQINHLQGHFAEHKKDHHSRRGLLRMVSQRRKLLDYLKRKDVARYTALIERLGLRR. 1 33.0 23.0 1.281101038708404E-11 1.2570688402910748E-12 0.0
/home/xiaowen/c_project/proteomics_cpp/testcases/data/st_no_digestion.msalign 225 623 836 68 12 6367.6372177343765 6367.61970348877 7204 gi|16767012|ref|NP_462627.1| 50S ribosomal subunit protein L33 [Salmonella typhimurium LT2] 6367.619703488769 1 55 .MAKGIREKIKLVSSAGTGHFYTTTKNKRTKPEKLELKKFDPVVRQHVIYKEAKIK. 0 14.0 13.0 6.306866603661445E-13 1.261373320732289E-12 0.0
/home/xiaowen/c_project/proteomics_cpp/testcases/data/st_no_digestion.msalign 250 648 870 47 5 2823.5093166679685 2823.499983029786 354 gi|16763570|ref|NP_459185.1| aspartate 1-decarboxylase [Salmonella typhimurium LT2] 13992.038381772461 1 24 .MIRTMLQGKLHRVKVTQADLHYEG.S 0 21.0 19.0 1.6136248949495902E-14 1.2747636670101762E-12 0.0
/home/xiaowen/c_project/proteomics_cpp/testcases/data/st_no_digestion.msalign 366 768 1030 145 12 9044.971183062502 9044.898699002684 6376 gi|16766598|ref|NP_462213.1| 50S ribosomal subunit protein L27 [Salmonella typhimurium LT2] 9175.939195828858 2 85 M.AHKKAGGSTRNGRDSEAKRLGVKRFGGEAVLAGSIIVRQRGTKFHAGTNVGCGRDHTLFAKADGKVKFEVKGPKNRKYISIVAE. 0 29.0 23.0 1.3106988845745762E-12 1.3106988845745762E-12 0.0
/home/xiaowen/c_project/proteomics_cpp/testcases/data/st_no_digestion.msalign 129 514 691 44 5 2941.396578734376 2941.387304501957 6348 gi|16766584|ref|NP_462199.1| protein chain initiation factor IF-2 [Salmonella typhimurium LT2] 97513.55948086304 105 129 A.AEEQAQREAEEQARREAEEQAKREA.Q 0 20.0 17.0 6.307516366100151E-16 1.390801142598133E-12 0.0
/home/xiaowen/c_project/proteomics_cpp/testcases/data/st_no_digestion.msalign 224 622 835 67 12 6367.6372177343765 6367.61970348877 7204 gi|16767012|ref|NP_462627.1| 50S ribosomal subunit protein L33 [Salmonella typhimurium LT2] 6367.619703488769 1 55 .MAKGIREKIKLVSSAGTGHFYTTTKNKRTKPEKLELKKFDPVVRQHVIYKEAKIK. 0 14.0 12.0 8.06608088138979E-13 1.613216176277958E-12 0.0
/home/xiaowen/c_project/proteomics_cpp/testcases/data/st_no_digestion.msalign 658 1071 1434 81 17 11177.324954664064 11177.324954664064 6618 gi|16766718|ref|NP_462333.1| 50S ribosomal subunit protein L24 [Salmonella typhimurium LT2] 11309.309614377442 2 104 M.AAKIRRDDEVIVLTGKDKGKRGKVKNVLSSGKVIVEGINLVKKHQKPVPALNQPGGIVEKEAA(IQ)[-.94]VSNVAIFNAATGKADRVGFRFEDGKKVRFFKSNSETIK. 1 29.0 18.0 1.379725496115595E-11 1.6210215904752015E-12 0.0
/home/xiaowen/c_project/proteomics_cpp/testcases/data/st_no_digestion.msalign 209 606 814 104 12 6250.61161096875 6250.606610968751 7204 gi|16767012|ref|NP_462627.1| 50S ribosomal subunit protein L33 [Salmonella typhimurium LT2] 6367.619703488769 2 55 M.(AK)[14.03]GIREKIKLVSSAGTGHFYTTTKNKRTKPEKLELKKFDPVVRQHVIYKEAKIK. 1 20.0 18.0 1.4794266287996426E-11 1.7950918343951707E-12 0.0
/home/xiaowen/c_project/proteomics_cpp/testcases/data/st_no_digestion.msalign 89 468 630 177 7 11063.949201929687 11063.949201929687 1452 gi|16764124|ref|NP_459739.1| hypothetical protein STM0759 [Salmonella typhimurium LT2] 13436.224081235352 25 128 A.AESNAQSSNGQANSAANAGQVAPDARQNVAPNDVNNNDINTNGNTNSTMQHP(D)[-.92]GSTMNHDGMTKDEEHKNTMCKDGRCPDINKKVETGNGVNNDVNTKTDGTTQ. 1 37.0 30.0 7.749670915169701E-14 1.997834718393936E-12 0.0
/home/xiaowen/c_project/proteomics_cpp/testcases/data/st_no_digestion.msalign 1729 2386 3187 60 14 11782.20977384375 11782.113416867676 7558 gi|16767191|ref|NP_462806.1| thioredoxin 1 [Salmonella typhimurium LT2] 11913.153913693848 2 109 M.SDKIIHLTDDSFDTDVLKADGAILVDFWAEWCGPCKMIAPILDEIADEYQGKLTVAKLNIDQNPGTAPKYGIRGIPTLLLFKNGEVAATKVGALSKGQLKEFLDANLA. 0 22.0 18.0 2.025942383619755E-12 2.025942383619755E-12 0.0
/home/xiaowen/c_project/proteomics_cpp/testcases/data/st_no_digestion.msalign 1120 1587 2122 153 17 9229.073784148439 9229.012678342286 5168 gi|16765991|ref|NP_461606.1| 30S ribosomal subunit protein S16 [Salmonella typhimurium LT2] 9229.012678342286 1 82 .MVTIRLARHGAKKRPFYQVVVTDSRNARNGRFIERVGFFNPIASEKEEGTRLDLDRIAHWVGQGATISDRVAALIKEVKKAA. 0 27.0 20.0 1.0663823186131423E-12 2.1327646372262845E-12 0.0
/home/xiaowen/c_project/proteomics_cpp/testcases/data/st_no_digestion.msalign 736 1152 1542 56 12 9518.344869359378 9518.289663510743 86 gi|16763433|ref|NP_459048.1| 30S ribosomal subunit protein S20 [Salmonella typhimurium LT2] 9649.330160336915 2 87 M.ANIKSAKKRAVQSEKARKHNASRRSMMRTFIKKVYAAIEAGDKAAALKAFNEMQPIVDRQAAKGLIHKNKAARHKANLTAQINKLA. 0 18.0 15.0 2.1862365379556806E-12 2.1862365379556806E-12 0.0
/home/xiaowen/c_project/proteomics_cpp/testcases/data/st_no_digestion.msalign 642 1052 1408 146 15 8970.935204906253 8970.880617337647 7206 gi|16767013|ref|NP_462628.1| 50S ribosomal subunit protein L28 [Salmonella typhimurium LT2] 9101.921114163819 2 78 M.SRVCQVTGKRPVTGNNRSHALNATKRRFLPNLHSHRFWVESEKRFVTLRVSAKGMRIIDKKGIETVLSELRARGEKY. 0 31.0 24.0 2.2724435360046194E-12 2.2724435360046194E-12 0.0
/home/xiaowen/c_project/proteomics_cpp/testcases/data/st_no_digestion.msalign 1245 1734 2318 19 9 6478.509447007813 6478.460607724609 3498 gi|16765150|ref|NP_460765.1| putative cytoplasmic protein [Salmonella typhimurium LT2] 6478.460607724609 1 57 .MNSEELTHKAEEEIAALISKKVAELRKKTGQEVSEIEFAPRETMKGLEGYHVKIKLL. 0 13.0 11.0 1.1987161636431097E-12 2.3974323272862193E-12 0.0
/home/xiaowen/c_project/proteomics_cpp/testcases/data/st_no_digestion.msalign 307 707 948 140 17 8420.728319058595 8420.707170682374 6198 gi|16766509|ref|NP_462124.1| 30S ribosomal subunit protein S21 [Salmonella typhimurium LT2] 8551.747667508545 2 71 M.PVIKVRENEPFDVALRRFKRSCEKAGVLAEVRRREFYEKPTTERKRAKASAVKRHAKKLARENARRTRLY. 0 29.0 20.0 2.5099596892573712E-12 2.5099596892573712E-12 0.0
/home/xiaowen/c_project/proteomics_cpp/testcases/data/st_no_digestion.msalign 1369 1901 2540 76 18 17503.406591898438 17503.297346311036 6606 gi|16766712|ref|NP_462327.1| 30S ribosomal subunit protein S5 [Salmonella typhimurium LT2] 17592.32727642578 2 167 M.(A)[42.01]HIEKQAGELQEKLIAVNRVSKTVKGGRIFSFTALTVVGDGNGRVGFGYGKAREVPAAIQKAMEKARRNMINVALNNGTLQHPVKGVHTGSRVFMQPASEGTGIIAGGAMRAVLEVAGVHNVLAKAYGSTNPINVVRATIDGLENMNSPEMVAAKRGKSVEEILGK. 0 19.0 16.0 2.560152076967169E-12 2.560152076967169E-12 0.0
/home/xiaowen/c_project/proteomics_cpp/testcases/data/st_no_digestion.msalign 403 809 1084 130 9 7825.967236679689 7825.967236679689 7898 gi|16767362|ref|NP_462977.1| 50S ribosomal subunit protein L31 [Salmonella typhimurium LT2] 7941.9762403540035 1 70 .MKKGIHPNYVEITA(TCSCGNVIKTHSTVGHDLNLDVCGKCH)[-116.01]PFFTGKQRVVDTGGRVERFNKRFSIPGSK. 1 38.0 27.0 1.2819708574116587E-11 2.705843723318956E-12 0.0
/home/xiaowen/c_project/proteomics_cpp/testcases/data/st_no_digestion.msalign 627 1036 1387 187 14 11527.336185617187 11527.286185617188 6614 gi|39546367|ref|NP_462331.2| 30S ribosomal subunit protein S14 [Salmonella typhimurium LT2] 11113.053682523194 2 96 M.KA(RE)[545.27]VKRVALADKYFAKRAELKAIISDVNATDEDRWNAVLKLQTLPRDSSPSRQRNRCRQTGRPHAFLRKFGLSRIKVREAAMRGEIPGLKKASW. 1 42.0 30.0 1.4720850860054008E-12 2.721272547710284E-12 0.0
/home/xiaowen/c_project/proteomics_cpp/testcases/data/st_no_digestion.msalign 1774 2475 3306 33 8 8095.21874278125 8095.153410153809 4302 gi|16765556|ref|NP_461171.1| putative cytoplasmic protein [Salmonella typhimurium LT2] 8226.193906979981 2 75 M.PQLSRYSDEHVEQLLSELLSVLEKHKAPTDLSLMVLGNMVTNLINTSVAPAQRQAIANSFARALQSSISEDNAH. 0 11.0 11.0 2.740123707743777E-12 2.740123707743777E-12 0.0
/home/xiaowen/c_project/proteomics_cpp/testcases/data/st_no_digestion.msalign 44 417 562 73 9 4416.468469876953 4416.468469876953 6598 gi|16766708|ref|NP_462323.1| 50S ribosomal subunit protein X [Salmonella typhimurium LT2] 4532.514040189209 1 38 .MKVRASVK(KLCRNCK)[-116.05]IVKRDGVIRVICSAEPKHKQRQG. 1 27.0 18.0 5.723386122924059E-11 2.8407747986449204E-12 0.0
/home/xiaowen/c_project/proteomics_cpp/testcases/data/st_no_digestion.msalign 675 1090 1459 69 9 6378.59648469922 6378.573545651855 6604 gi|16766711|ref|NP_462326.1| 50S ribosomal subunit protein L30 [Salmonella typhimurium LT2] 6509.614042478027 2 59 M.AKTIKITQTRSAIGRLPKHKATLLGLGLRRIGHTVEREDTPAVRGMVNAVSFMVKVEE. 0 22.0 18.0 3.209689329983692E-12 3.209689329983692E-12 0.0
/home/xiaowen/c_project/proteomics_cpp/testcases/data/st_no_digestion.msalign 637 1046 1400 182 15 11527.327322703124 11527.307322703124 6614 gi|39546367|ref|NP_462331.2| 30S ribosomal subunit protein S14 [Salmonella typhimurium LT2] 11113.053682523194 2 96 M.KA(REVKRVALA)[545.29]DKYFAKRAELKAIISDVNATDEDRWNAVLKLQTLPRDSSPSRQRNRCRQTGRPHAFLRKFGLSRIKVREAAMRGEIPGLKKASW. 1 35.0 29.0 1.753625786377365E-12 3.2417241073849683E-12 0.0
/home/xiaowen/c_project/proteomics_cpp/testcases/data/st_no_digestion.msalign 879 1300 1739 163 13 10059.493826835936 10059.473826835936 6342 gi|16766581|ref|NP_462196.1| 30S ribosomal subunit protein S15 [Salmonella typhimurium LT2] 10191.46906109375 2 89 M.SLSTEATAKIVSEFGRDANDT(GST)[-.95]DVQVALLTAQINHLQGHFAEHKKDHHSRRGLLRMVSQRRKLLDYLKRKDVARYTALIERLGLRR. 1 34.0 26.0 3.7578528324892587E-11 3.643978504232009E-12 0.0
/home/xiaowen/c_project/proteomics_cpp/testcases/data/st_no_digestion.msalign 707 1122 1502 63 10 6509.6506165078135 6509.614042478027 6604 gi|16766711|ref|NP_462326.1| 50S ribosomal subunit protein L30 [Salmonella typhimurium LT2] 6509.614042478027 1 59 .MAKTIKITQTRSAIGRLPKHKATLLGLGLRRIGHTVEREDTPAVRGMVNAVSFMVKVEE. 0 24.0 17.0 1.878913063518778E-12 3.757826127037556E-12 0.0
/home/xiaowen/c_project/proteomics_cpp/testcases/data/st_no_digestion.msalign 106 488 656 89 7 5365.868112671876 5365.83616467041 3026 gi|16764909|ref|NP_460524.1| 30S ribosomal subunit protein S22 [Salmonella typhimurium LT2] 5365.83616467041 1 47 .MKSNRQARHILGLDYRISNQRKVVTEGDTSSVVNNPTGRKRRADSQK. 0 16.0 16.0 1.977195498073216E-12 3.954390996146432E-12 0.0
/home/xiaowen/c_project/proteomics_cpp/testcases/data/st_no_digestion.msalign 860 1280 1712 85 16 9699.311562375 9699.242078977051 6622 gi|16766720|ref|NP_462335.1| 30S ribosomal subunit protein S17 [Salmonella typhimurium LT2] 9830.282575803223 2 84 M.TDKIRTLQGRVVSDKMEKSIVVAIERFVKHPIYGKFIKRTTKMHVHDENNECGIGDVVEIRECRPLSKTKSWTLVRVVEKAVL. 0 21.0 17.0 4.063237791077524E-12 4.063237791077524E-12 0.0
/home/xiaowen/c_project/proteomics_cpp/testcases/data/st_no_digestion.msalign 1519 2108 2816 70 13 10850.76821579297 10850.697179990235 6412 gi|16766616|ref|NP_462231.1| putative sigma N modulation factor [Salmonella typhimurium LT2] 10850.697179990235 1 95 .MQLNITGHNVEITEALREFVTTKFAKLEQYFERINQVYVVLKVEKVTHISDATLHVNGGEIHASAEGQDMYAAIDGLIDKLARQLTRHKDKLKQH. 0 25.0 16.0 1.4369674227355915E-12 4.310902268206774E-12 0.0
/home/xiaowen/c_project/proteomics_cpp/testcases/data/st_no_digestion.msalign 299 699 938 140 15 8420.734509242187 8420.707170682374 6198 gi|16766509|ref|NP_462124.1| 30S ribosomal subunit protein S21 [Salmonella typhimurium LT2] 8551.747667508545 2 71 M.PVIKVRENEPFDVALRRFKRSCEKAGVLAEVRRREFYEKPTTERKRAKASAVKRHAKKLARENARRTRLY. 0 28.0 19.0 4.468448217182689E-12 4.468448217182689E-12 0.0
/home/xiaowen/c_project/proteomics_cpp/testcases/data/st_no_digestion.msalign 1296 1791 2394 77 11 7256.023804742187 7255.987646298828 6624 gi|16766721|ref|NP_462336.1| 50S ribosomal subunit protein L29 [Salmonella typhimurium LT2] 7255.987646298828 1 63 .MKAKELREKSVEELNTELLNLLREQFNLRMQAASGQLQQSHLLKQVRRDVARVKTLLTEKAGA. 0 31.0 21.0 2.459423071336436E-12 4.918846142672872E-12 0.0
/home/xiaowen/c_project/proteomics_cpp/testcases/data/st_no_digestion.msalign 468 875 1172 49 11 8246.031237367188 8246.031237367188 7898 gi|16767362|ref|NP_462977.1| 50S ribosomal subunit protein L31 [Salmonella typhimurium LT2] 7941.9762403540035 1 70 .MKKGIHPNYVEITATC(SCGNVIKTHSTVGHDL)[304.05]NLDVCGKCHPFFTGKQRVVDTGGRVERFNKRFSIPGSK. 1 19.0 16.0 8.632137534328263E-12 5.087338593850948E-12 0.0
/home/xiaowen/c_project/proteomics_cpp/testcases/data/st_no_digestion.msalign 376 778 1043 150 8 9044.930951125 9044.898699002686 6376 gi|16766598|ref|NP_462213.1| 50S ribosomal subunit protein L27 [Salmonella typhimurium LT2] 9175.939195828858 2 85 M.AHKKAGGSTRNGRDSEAKRLGVKRFGGEAVLAGSIIVRQRGTKFHAGTNVGCGRDHTLFAKADGKVKFEVKGPKNRKYISIVAE. 0 28.0 24.0 5.398296342547635E-12 5.398296342547635E-12 0.0
/home/xiaowen/c_project/proteomics_cpp/testcases/data/st_no_digestion.msalign 252 650 872 47 4 2823.5093294843746 2823.4999830297857 354 gi|16763570|ref|NP_459185.1| aspartate 1-decarboxylase [Salmonella typhimurium LT2] 13992.038381772461 1 24 .MIRTMLQGKLHRVKVTQADLHYEG.S 0 23.0 19.0 6.960622233642011E-14 5.498891564577189E-12 0.0
/home/xiaowen/c_project/proteomics_cpp/testcases/data/st_no_digestion.msalign 1778 2479 3311 19 9 8095.215800277344 8095.15341015381 4302 gi|16765556|ref|NP_461171.1| putative cytoplasmic protein [Salmonella typhimurium LT2] 8226.193906979981 2 75 M.PQLSRYSDEHVEQLLSELLSVLEKHKAPTDLSLMVLGNMVTNLINTSVAPAQRQAIANSFARALQSSISEDNAH. 0 10.0 9.0 5.667016959635713E-12 5.667016959635713E-12 0.0
/home/xiaowen/c_project/proteomics_cpp/testcases/data/st_no_digestion.msalign 1413 1955 2612 63 9 9113.77180965625 9113.737188535157 4692 gi|16765751|ref|NP_461366.1| phosphohistidinoprotein-hexose phosphotransferase [Salmonella typhimurium LT2] 9113.737188535157 1 85 .MFQQEVTITAPNGLHTRPAAQFVKEAKGFTSEITVTSNGKSASAKSLFKLQTLGLTQGTVVTISAEGEDEQKAVEHLVKLMAELE. 0 17.0 16.0 2.8997345616551622E-12 5.7994691233103245E-12 0.0
/home/xiaowen/c_project/proteomics_cpp/testcases/data/st_no_digestion.msalign 15 387 522 75 8 4532.51744240625 4532.514040189209 6598 gi|16766708|ref|NP_462323.1| 50S ribosomal subunit protein X [Salmonella typhimurium LT2] 4532.514040189209 1 38 .MKVRASVKKLCRNCKIVKRDGVIRVICSAEPKHKQRQG. 0 16.0 14.0 2.910072599472102E-12 5.820145198944204E-12 0.0
/home/xiaowen/c_project/proteomics_cpp/testcases/data/st_no_digestion.msalign 69 442 595 105 7 6310.404376660156 6310.404376660156 2302 gi|16764546|ref|NP_460161.1| 50S ribosomal subunit protein L32 [Salmonella typhimurium LT2] 6442.431486325683 2 57 M.AVQQNKPTRSKRGMRRSHDALTA(V)[-.99]TSLSVDKTSGEKHLRHHITADGYYRGRKVIAK. 1 23.0 18.0 8.934062153256965E-11 6.016607474660772E-12 0.0
/home/xiaowen/c_project/proteomics_cpp/testcases/data/st_no_digestion.msalign 791 1208 1616 116 14 9518.33397946875 9518.289663510743 86 gi|16763433|ref|NP_459048.1| 30S ribosomal subunit protein S20 [Salmonella typhimurium LT2] 9649.330160336915 2 87 M.ANIKSAKKRAVQSEKARKHNASRRSMMRTFIKKVYAAIEAGDKAAALKAFNEMQPIVDRQAAKGLIHKNKAARHKANLTAQINKLA. 0 30.0 22.0 6.349828665850093E-12 6.349828665850093E-12 0.0
/home/xiaowen/c_project/proteomics_cpp/testcases/data/st_no_digestion.msalign 181 568 763 104 14 6249.613599496092 6249.613599496092 7204 gi|16767012|ref|NP_462627.1| 50S ribosomal subunit protein L33 [Salmonella typhimurium LT2] 6367.619703488769 2 55 M.(AKGIREKIK)[13.03]LVSSAGTGHFYTTTKNKRTKPEKLELKKFDPVVRQHVIYKEAKIK. 1 23.0 15.0 6.6371989082471E-11 6.4403431368930116E-12 0.0
/home/xiaowen/c_project/proteomics_cpp/testcases/data/st_no_digestion.msalign 42 415 559 73 6 4416.467318140625 4416.467318140625 6598 gi|16766708|ref|NP_462323.1| 50S ribosomal subunit protein X [Salmonella typhimurium LT2] 4532.514040189209 1 38 .MKVRASVK(KLCRNCKIVK)[-116.05]RDGVIRVICSAEPKHKQRQG. 1 24.0 21.0 1.4222294819399735E-10 6.8781624208166056E-12 0.0
/home/xiaowen/c_project/proteomics_cpp/testcases/data/st_no_digestion.msalign 243 641 860 57 8 4375.341046874999 4375.323522763672 6632 gi|16766725|ref|NP_462340.1| 30S ribosomal subunit protein S19 [Salmonella typhimurium LT2] 10409.699133115235 54 92 N.GRQHVPVFVSDEMVGHKLGEFAPTRTYRGHAADKKAKKK. 0 18.0 16.0 1.8138541162405801E-13 7.074031053338263E-12 0.0
/home/xiaowen/c_project/proteomics_cpp/testcases/data/st_no_digestion.msalign 554 961 1287 93 9 6394.593670082031 6394.578670082032 6604 gi|16766711|ref|NP_462326.1| 50S ribosomal subunit protein L30 [Salmonella typhimurium LT2] 6509.614042478027 2 59 M.AKTIKITQTRSAIGRLPKHKATLLGLGLRRIGHTVEREDTPAVRGMVNAVSF(M)[16.01]VKVEE. 1 32.0 23.0 2.967230292096525E-11 7.46558399200864E-12 0.0
/home/xiaowen/c_project/proteomics_cpp/testcases/data/st_no_digestion.msalign 365 767 1028 138 13 9043.936807453125 9043.921807453125 6376 gi|16766598|ref|NP_462213.1| 50S ribosomal subunit protein L27 [Salmonella typhimurium LT2] 9175.939195828858 2 85 M.AHKKAGGSTRNGRDSEAKRLGVKRFGGEAVLAGSIIVRQRGTKFHAGTNVGCGRDHTL(F)[-.98]AKADGKVKFEVKGPKNRKYISIVAE. 1 32.0 25.0 6.926004559887461E-11 8.089541393548317E-12 0.0
/home/xiaowen/c_project/proteomics_cpp/testcases/data/st_no_digestion.msalign 576 983 1316 41 4 3148.4558496874997 3148.442693906247 2072 gi|16764429|ref|NP_460044.1| putative hydrogenase membrane component precurosr [Salmonella typhimurium LT2] 37605.86566753906 22 49 A.APKDNTWYAGAKLGWSQYHDTGFIHNDG.P 0 18.0 17.0 3.8072636118585086E-15 8.982129386245448E-12 0.0
/home/xiaowen/c_project/proteomics_cpp/testcases/data/st_no_digestion.msalign 59 432 582 103 12 6311.411392656252 6311.390989499512 2302 gi|16764546|ref|NP_460161.1| 50S ribosomal subunit protein L32 [Salmonella typhimurium LT2] 6442.431486325683 2 57 M.AVQQNKPTRSKRGMRRSHDALTAVTSLSVDKTSGEKHLRHHITADGYYRGRKVIAK. 0 25.0 18.0 9.107977757731965E-12 9.107977757731965E-12 0.0
/home/xiaowen/c_project/proteomics_cpp/testcases/data/st_no_digestion.msalign 679 1094 1464 62 10 6378.609655476562 6378.573545651855 6604 gi|16766711|ref|NP_462326.1| 50S ribosomal subunit protein L30 [Salmonella typhimurium LT2] 6509.614042478027 2 59 M.AKTIKITQTRSAIGRLPKHKATLLGLGLRRIGHTVEREDTPAVRGMVNAVSFMVKVEE. 0 22.0 16.0 9.416557141371364E-12 9.416557141371364E-12 0.0
/home/xiaowen/c_project/proteomics_cpp/testcases/data/st_no_digestion.msalign 1534 2125 2839 97 14 9250.101228382813 9250.036228382813 870 gi|16763832|ref|NP_459447.1| DNA-binding protein HU-beta [Salmonella typhimurium LT2] 9234.010030942383 2 90 M.NKSQLIEKIAAGADISKAAAGRALD(A)[147.07]IIASVTESLKEGDDVALVGFGTFAVKERAARTGRNPQTGKEITIAAAKVPSFRAGKALKDAVN. 1 38.0 22.0 2.5009420524017352E-11 9.421379406384816E-12 0.0
/home/xiaowen/c_project/proteomics_cpp/testcases/data/st_no_digestion.msalign 956 1381 1847 111 10 9300.779858515629 9300.779858515629 7154 gi|16766987|ref|NP_462602.1| glutaredoxin 3 [Salmonella typhimurium LT2] 9300.730608182374 1 83 .(M)[-.99]ANIEIYTKATCPFCHRAKALLNSKGVSFQEIAIDGDAVKREEMIKRSGRTTVPQIFID(AQ)[1.04]HIGGCDDLYALDARGGLDPLLR. 2 36.0 33.0 4.626840834561439E-13 9.521291945703298E-12 0.0
/home/xiaowen/c_project/proteomics_cpp/testcases/data/st_no_digestion.msalign 543 950 1272 101 9 6394.603557777344 6394.578557777344 6604 gi|16766711|ref|NP_462326.1| 50S ribosomal subunit protein L30 [Salmonella typhimurium LT2] 6509.614042478027 2 59 M.AKTIKITQTRSAIGRLPKHKATLLGLGLRRIGHTVEREDTPAVRGMVNAVSF(M)[16.00]VKVEE. 1 36.0 25.0 3.792111311505051E-11 9.5848401715431E-12 0.0
/home/xiaowen/c_project/proteomics_cpp/testcases/data/st_no_digestion.msalign 1465 2021 2700 60 12 15163.5447344375 15163.423299985352 8448 gi|16767637|ref|NP_463252.1| 30S ribosomal subunit protein S6 [Salmonella typhimurium LT2] 15163.423299985352 1 131 .MRHYEIVFMVHPDQSEQVPGMIERYSAAITGAEGKIHRLEDWGRRQLAYPINKLHKAHYVLMNVEAPQEVIDELETTFRFNDAVIRSMVMRTKHAVTEASPMVKAKDERRERRDDFANETADDAEAGDSEE. 0 18.0 16.0 5.610178243914604E-12 1.1220356487829209E-11 0.0
/home/xiaowen/c_project/proteomics_cpp/testcases/data/st_no_digestion.msalign 1834 2611 3487 24 8 8103.0571216875 8102.998132901612 3764 gi|16765287|ref|NP_460902.1| putative cytoplasmic protein [Salmonella typhimurium LT2] 8234.038629727784 2 74 M.STPDFSTAENNQELATEVNCLKAMLTLMLQAMGQADAGRVILKMEKQIAQMDDEAQAAVFSSTVKQIKQAYRQ. 0 12.0 12.0 1.1927651713787709E-11 1.1927651713787709E-11 0.0
/home/xiaowen/c_project/proteomics_cpp/testcases/data/st_no_digestion.msalign 925 1348 1803 59 11 9169.768521160157 9169.690111356203 7154 gi|16766987|ref|NP_462602.1| glutaredoxin 3 [Salmonella typhimurium LT2] 9300.730608182374 2 83 M.ANIEIYTKATCPFCHRAKALLNSKGVSFQEIAIDGDAVKREEMIKRSGRTTVPQIFIDAQHIGGCDDLYALDARGGLDPLLR. 0 21.0 19.0 1.2103714406116648E-11 1.2103714406116648E-11 0.0
/home/xiaowen/c_project/proteomics_cpp/testcases/data/st_no_digestion.msalign 1399 1938 2590 96 17 15459.00297837891 15458.961076932372 3388 gi|16765095|ref|NP_460710.1| DNA-binding protein HLP-II [Salmonella typhimurium LT2] 15590.001573758545 2 137 M.SEALKILNNIRTLRAQARECTLETLEEMLEKLEVVVNERREEESAAAAEVEERTRKLQQYREMLIADGIDPNELLNSMAAAKSGTKAKRAARPAKYSYVDENGETKTWTGQGRTPAVIKKAMEEQGKQLEDFLIKE. 0 32.0 24.0 1.2116367547191577E-11 1.2116367547191577E-11 0.0
/home/xiaowen/c_project/proteomics_cpp/testcases/data/st_no_digestion.msalign 1096 1550 2072 128 11 9229.086861535157 9229.012678342286 5168 gi|16765991|ref|NP_461606.1| 30S ribosomal subunit protein S16 [Salmonella typhimurium LT2] 9229.012678342286 1 82 .MVTIRLARHGAKKRPFYQVVVTDSRNARNGRFIERVGFFNPIASEKEEGTRLDLDRIAHWVGQGATISDRVAALIKEVKKAA. 0 22.0 20.0 6.170260490250097E-12 1.2340520980500194E-11 0.0
/home/xiaowen/c_project/proteomics_cpp/testcases/data/st_no_digestion.msalign 249 647 868 68 12 9512.694234593753 9512.694234593753 738 gi|16763764|ref|NP_459379.1| phosphate starvation-inducible protein [Salmonella typhimurium LT2] 11830.048254208985 22 106 A.TEKPLTPQQQRMTTCNQQATAQALKGDARKTYLSDCLKNSQSAPGEKSLT(PQQQKMRE)[-116.03]CNVQATEQSLKGDDRSKFMSACLKKAA. 1 30.0 25.0 2.3018632809760495E-13 1.2480968020152714E-11 0.0
/home/xiaowen/c_project/proteomics_cpp/testcases/data/st_no_digestion.msalign 40 413 556 73 9 4416.469568509766 4416.469568509766 6598 gi|16766708|ref|NP_462323.1| 50S ribosomal subunit protein X [Salmonella typhimurium LT2] 4532.514040189209 1 38 .MKVRASVK(KLCRN)[-116.04]CKIVKRDGVIRVICSAEPKHKQRQG. 1 18.0 16.0 2.6304462498360717E-10 1.2721320135286053E-11 0.0
/home/xiaowen/c_project/proteomics_cpp/testcases/data/st_no_digestion.msalign 939 1362 1822 47 8 7264.66733684375 7264.61311932129 6494 gi|16766657|ref|NP_462272.1| putative periplasmic protein [Salmonella typhimurium LT2] 9528.873335080567 23 88 A.AVHQVNAEQAQNLQPMGTISVSQIGSTPMDMRQEIVAKAEKAGANSYRIIELKEGDNWHATAELYK. 0 24.0 21.0 3.8637542018242524E-13 1.2750388866020032E-11 0.0
/home/xiaowen/c_project/proteomics_cpp/testcases/data/st_no_digestion.msalign 68 441 594 105 13 6311.415286089844 6311.390989499511 2302 gi|16764546|ref|NP_460161.1| 50S ribosomal subunit protein L32 [Salmonella typhimurium LT2] 6442.431486325683 2 57 M.AVQQNKPTRSKRGMRRSHDALTAVTSLSVDKTSGEKHLRHHITADGYYRGRKVIAK. 0 26.0 17.0 1.6047653928007552E-11 1.6047653928007552E-11 0.0
/home/xiaowen/c_project/proteomics_cpp/testcases/data/st_no_digestion.msalign 439 846 1134 126 12 8094.009473 8094.009473 7898 gi|16767362|ref|NP_462977.1| 50S ribosomal subunit protein L31 [Salmonella typhimurium LT2] 7941.9762403540035 1 70 .MKKGIHPNYVEITATCSCGN(VIKTH)[152.03]STVGHDLNLDVCGKCHPFFTGKQRVVDTGGRVERFNKRFSIPGSK. 1 30.0 22.0 6.559890679432386E-11 1.6543152059343907E-11 0.0
/home/xiaowen/c_project/proteomics_cpp/testcases/data/st_no_digestion.msalign 688 1103 1476 101 6 6378.615932328125 6378.573545651856 6604 gi|16766711|ref|NP_462326.1| 50S ribosomal subunit protein L30 [Salmonella typhimurium LT2] 6509.614042478027 2 59 M.AKTIKITQTRSAIGRLPKHKATLLGLGLRRIGHTVEREDTPAVRGMVNAVSFMVKVEE. 0 24.0 16.0 1.6609917252793302E-11 1.6609917252793302E-11 0.0
/home/xiaowen/c_project/proteomics_cpp/testcases/data/st_no_digestion.msalign 1304 1803 2410 59 15 10614.607104347659 10614.512960629881 1892 gi|16764342|ref|NP_459957.1| integration host factor beta subunit [Salmonella typhimurium LT2] 10614.512960629883 1 94 .MTKSELIERLATQQSHIPAKAVEDAVKEMLEHMASTLAQGERIEIRGFGSFSLHYRAPRTGRNPKTGDKVELEGKYVPHFKPGKELRDRANIYG. 0 16.0 15.0 8.727663969699796E-12 1.7455327939399593E-11 0.0
/home/xiaowen/c_project/proteomics_cpp/testcases/data/st_no_digestion.msalign 211 608 816 104 10 6250.613467656251 6250.60346765625 7204 gi|16767012|ref|NP_462627.1| 50S ribosomal subunit protein L33 [Salmonella typhimurium LT2] 6367.619703488769 2 55 M.(A)[14.02]KGIREKIKLVSSAGTGHFYTTTKNKRTKPEKLELKKFDPVVRQHVIYKEAKIK. 1 19.0 17.0 1.471520432768796E-10 1.820020691010421E-11 0.0
/home/xiaowen/c_project/proteomics_cpp/testcases/data/st_no_digestion.msalign 1206 1691 2260 75 10 9781.90439171094 9781.874391710939 4144 gi|16765477|ref|NP_461092.1| putative periplasmic protein [Salmonella typhimurium LT2] 11884.955469327393 2 104 M.(KSKLLPCALLLATSFAWAAPATTGID)[42.01](QYELKSFIADFTHFKPGDTV)[-2014.05]PQMYRTDEYNIKQWKLRNLPAPDAGTHWTYMGGAYVLINDTDGKIIKAYDGEIFYHR. 1 23.0 20.0 3.265248616454945E-12 1.8395526731000576E-11 0.0
/home/xiaowen/c_project/proteomics_cpp/testcases/data/st_no_digestion.msalign 663 1078 1443 149 16 8970.9088859375 8970.880617337647 7206 gi|16767013|ref|NP_462628.1| 50S ribosomal subunit protein L28 [Salmonella typhimurium LT2] 9101.921114163819 2 78 M.SRVCQVTGKRPVTGNNRSHALNATKRRFLPNLHSHRFWVESEKRFVTLRVSAKGMRIIDKKGIETVLSELRARGEKY. 0 26.0 21.0 1.8798744264456373E-11 1.8798744264456373E-11 0.0
/home/xiaowen/c_project/proteomics_cpp/testcases/data/st_no_digestion.msalign 56 429 578 105 12 6327.403833296876 6327.403833296876 2302 gi|16764546|ref|NP_460161.1| 50S ribosomal subunit protein L32 [Salmonella typhimurium LT2] 6442.431486325683 2 57 M.AV(QQNKPTRSKRGMRRSHD)[16.01]ALTAVTSLSVDKTSGEKHLRHHITADGYYRGRKVIAK. 1 33.0 22.0 9.7773988474173E-11 1.9251760720529964E-11 0.0
/home/xiaowen/c_project/proteomics_cpp/testcases/data/st_no_digestion.msalign 536 943 1263 41 8 7079.476941156249 7079.476941156249 748 gi|16763769|ref|NP_459384.1| putative cytoplasmic protein [Salmonella typhimurium LT2] 7222.519148068847 2 63 M.PTRPPYPREAYIVTIEKGTPGQTVTWYQLRADHPK(PDSLISEH)[-12.00]PTAEEAMDAKNRYEDPDKS. 1 16.0 15.0 3.4251225593392543E-10 2.0299487599678846E-11 0.0
/home/xiaowen/c_project/proteomics_cpp/testcases/data/st_no_digestion.msalign 45 418 563 73 6 4416.468416773438 4416.488416773438 6598 gi|16766708|ref|NP_462323.1| 50S ribosomal subunit protein X [Salmonella typhimurium LT2] 4532.514040189209 1 38 .MKVRASVKKL(CRNCKIVKR)[-116.03]DGVIRVICSAEPKHKQRQG. 1 23.0 20.0 4.1642283486960574E-10 2.0668944388352382E-11 0.0
/home/xiaowen/c_project/proteomics_cpp/testcases/data/st_no_digestion.msalign 1724 2381 3180 29 13 11782.23072171875 11782.113416867676 7558 gi|16767191|ref|NP_462806.1| thioredoxin 1 [Salmonella typhimurium LT2] 11913.153913693848 2 109 M.SDKIIHLTDDSFDTDVLKADGAILVDFWAEWCGPCKMIAPILDEIADEYQGKLTVAKLNIDQNPGTAPKYGIRGIPTLLLFKNGEVAATKVGALSKGQLKEFLDANLA. 0 15.0 15.0 2.1512270513648736E-11 2.1512270513648736E-11 0.0
/home/xiaowen/c_project/proteomics_cpp/testcases/data/st_no_digestion.msalign 690 1105 1479 106 11 6378.608238851562 6378.573545651855 6604 gi|16766711|ref|NP_462326.1| 50S ribosomal subunit protein L30 [Salmonella typhimurium LT2] 6509.614042478027 2 59 M.AKTIKITQTRSAIGRLPKHKATLLGLGLRRIGHTVEREDTPAVRGMVNAVSFMVKVEE. 0 36.0 18.0 2.1823052587877296E-11 2.1823052587877296E-11 0.0
/home/xiaowen/c_project/proteomics_cpp/testcases/data/st_no_digestion.msalign 1794 2529 3378 25 8 8794.481782375 8794.481782375 816 gi|16763804|ref|NP_459419.1| exonuclease VII small subunit [Salmonella typhimurium LT2] 8926.463331418458 2 80 M.PKKNEAPASFETALSELEHIVTRLESGDL(PLEDALNEFERGVQLARQGQAKLQQAEQRVQI)[-.94]LLSDNEEASPEPFIADNE. 1 16.0 15.0 1.2618738948649252E-10 2.2752318038962736E-11 0.0
/home/xiaowen/c_project/proteomics_cpp/testcases/data/st_no_digestion.msalign 650 1060 1419 48 16 11178.336503124998 11178.26911755127 6618 gi|16766718|ref|NP_462333.1| 50S ribosomal subunit protein L24 [Salmonella typhimurium LT2] 11309.309614377442 2 104 M.AAKIRRDDEVIVLTGKDKGKRGKVKNVLSSGKVIVEGINLVKKHQKPVPALNQPGGIVEKEAAIQVSNVAIFNAATGKADRVGFRFEDGKKVRFFKSNSETIK. 0 15.0 11.0 2.3594746564462873E-11 2.3594746564462873E-11 0.0
/home/xiaowen/c_project/proteomics_cpp/testcases/data/st_no_digestion.msalign 232 630 846 69 10 6250.606753789063 6250.606753789063 7204 gi|16767012|ref|NP_462627.1| 50S ribosomal subunit protein L33 [Salmonella typhimurium LT2] 6367.619703488769 2 55 M.(A)[14.03]KGIREKIKLVSSAGTGHFYTTTKNKRTKPEKLELKKFDPVVRQHVIYKEAKIK. 1 17.0 15.0 2.146874163048641E-10 2.6504619296896803E-11 0.0
/home/xiaowen/c_project/proteomics_cpp/testcases/data/st_no_digestion.msalign 520 927 1242 98 10 6394.599028359375 6394.5940283593745 6604 gi|16766711|ref|NP_462326.1| 50S ribosomal subunit protein L30 [Salmonella typhimurium LT2] 6509.614042478027 2 59 M.AKTIKITQTRSAIGRLPKHKATLLGLGLRRIGHTVERED(TPAVRGM)[16.02]VNAVSFMVKVEE. 1 35.0 22.0 1.0693148401594202E-10 2.697812670126978E-11 0.0
/home/xiaowen/c_project/proteomics_cpp/testcases/data/st_no_digestion.msalign 1416 1958 2616 67 11 9113.842035488282 9113.737188535159 4692 gi|16765751|ref|NP_461366.1| phosphohistidinoprotein-hexose phosphotransferase [Salmonella typhimurium LT2] 9113.737188535157 1 85 .MFQQEVTITAPNGLHTRPAAQFVKEAKGFTSEITVTSNGKSASAKSLFKLQTLGLTQGTVVTISAEGEDEQKAVEHLVKLMAELE. 0 18.0 16.0 1.4853240544845583E-11 2.9706481089691166E-11 0.0
/home/xiaowen/c_project/proteomics_cpp/testcases/data/st_no_digestion.msalign 80 456 614 184 12 11079.905863921875 11079.905863921875 1452 gi|16764124|ref|NP_459739.1| hypothetical protein STM0759 [Salmonella typhimurium LT2] 13436.224081235352 25 128 A.AESNAQSSNGQANSAANAGQVAPDARQNVAPNDVNNNDINTN(GNTN)[-212.10]STMQHPDGSTMNHDGMTKDEEHKNTMCKDGR(CPDINK)[227.14]KVETGNGVNNDVNTKTDGTTQ. 2 44.0 37.0 6.718739144547057E-15 3.014980903850089E-11 0.0
/home/xiaowen/c_project/proteomics_cpp/testcases/data/st_no_digestion.msalign 210 607 815 104 13 6250.616664070312 6250.611664070312 7204 gi|16767012|ref|NP_462627.1| 50S ribosomal subunit protein L33 [Salmonella typhimurium LT2] 6367.619703488769 1 55 .MAKGIREKIK(LV)[-117.01]SSAGTGHFYTTTKNKRTKPEKLELKKFDPVVRQHVIYKEAKIK. 1 20.0 17.0 2.2698684771678626E-10 3.0399230617076454E-11 0.0
/home/xiaowen/c_project/proteomics_cpp/testcases/data/st_no_digestion.msalign 388 794 1064 108 10 7882.975804820312 7882.995804820313 7898 gi|16767362|ref|NP_462977.1| 50S ribosomal subunit protein L31 [Salmonella typhimurium LT2] 7941.9762403540035 1 70 .MKKGIHPNYVEITAT(CS)[-58.98]CGNVIKTHSTVGHDLNLDVCGKCHPFFTGKQRVVDTGGRVERFNKRFSIPGSK. 1 33.0 22.0 2.582130943710954E-10 3.048606498611876E-11 0.0
/home/xiaowen/c_project/proteomics_cpp/testcases/data/st_no_digestion.msalign 685 1100 1472 106 11 6378.605553304687 6378.573545651855 6604 gi|16766711|ref|NP_462326.1| 50S ribosomal subunit protein L30 [Salmonella typhimurium LT2] 6509.614042478027 2 59 M.AKTIKITQTRSAIGRLPKHKATLLGLGLRRIGHTVEREDTPAVRGMVNAVSFMVKVEE. 0 33.0 18.0 3.070223818154282E-11 3.070223818154282E-11 0.0
/home/xiaowen/c_project/proteomics_cpp/testcases/data/st_no_digestion.msalign 1132 1605 2146 68 14 9229.058502773438 9229.012678342286 5168 gi|16765991|ref|NP_461606.1| 30S ribosomal subunit protein S16 [Salmonella typhimurium LT2] 9229.012678342286 1 82 .MVTIRLARHGAKKRPFYQVVVTDSRNARNGRFIERVGFFNPIASEKEEGTRLDLDRIAHWVGQGATISDRVAALIKEVKKAA. 0 16.0 13.0 1.5846273871658863E-11 3.1692547743317726E-11 0.0
/home/xiaowen/c_project/proteomics_cpp/testcases/data/st_no_digestion.msalign 402 808 1083 130 10 7825.968383531252 7825.968383531252 7898 gi|16767362|ref|NP_462977.1| 50S ribosomal subunit protein L31 [Salmonella typhimurium LT2] 7941.9762403540035 1 70 .MKKGIHPNYVEITA(TCSCGNVIKTHSTVGHDLNLDVCGKCH)[-116.01]PFFTGKQRVVDTGGRVERFNKRFSIPGSK. 1 38.0 26.0 1.507480282667607E-10 3.1818243272073106E-11 0.0
/home/xiaowen/c_project/proteomics_cpp/testcases/data/st_no_digestion.msalign 684 1099 1471 106 8 6378.5991830625 6378.573545651855 6604 gi|16766711|ref|NP_462326.1| 50S ribosomal subunit protein L30 [Salmonella typhimurium LT2] 6509.614042478027 2 59 M.AKTIKITQTRSAIGRLPKHKATLLGLGLRRIGHTVEREDTPAVRGMVNAVSFMVKVEE. 0 27.0 19.0 3.186817277335498E-11 3.186817277335498E-11 0.0
/home/xiaowen/c_project/proteomics_cpp/testcases/data/st_no_digestion.msalign 1551 2143 2863 47 12 12939.6078863125 12939.526521878663 2772 gi|16764781|ref|NP_460396.1| putative glutaredoxin protein [Salmonella typhimurium LT2] 13070.567018704834 2 115 M.STTIEKIQRQIAENPILLYMKGSPKLPSCGFSAQAVQALSACGERFAYVDILQNPDIRAELPKYANWPTFPQLWVDGELVGGCDIVIEMYQRGELQQLIKETAAKYKTQEPDAE. 0 17.0 13.0 3.1891223252692013E-11 3.1891223252692013E-11 0.0
/home/xiaowen/c_project/proteomics_cpp/testcases/data/st_no_digestion.msalign 847 1266 1694 40 9 7733.042145816407 7732.998460965573 8942 gi|17233500|ref|NP_490541.1| putative cytoplasmic protein [Salmonella typhimurium LT2] 35413.27932568115 246 313 M.TIAQQLEQKGIEKGIQLGEQRGIEKGRSEGEREATLKIARTMLQNCIDRNTVMKMTGLTEDDLAQIRH. 0 15.0 15.0 8.840743600068988E-13 3.2710751320255256E-11 0.0
/home/xiaowen/c_project/proteomics_cpp/testcases/data/st_no_digestion.msalign 1191 1671 2234 89 10 7272.038771171876 7272.028771171876 6624 gi|16766721|ref|NP_462336.1| 50S ribosomal subunit protein L29 [Salmonella typhimurium LT2] 7255.987646298828 1 63 .MKAKELREKSVEELNTELLNLLREQFN(LRMQA)[16.04]ASGQLQQSHLLKQVRRDVARVKTLLTEKAGA. 1 27.0 23.0 8.20315309851195E-11 3.308706733042924E-11 0.0
/home/xiaowen/c_project/proteomics_cpp/testcases/data/st_no_digestion.msalign 141 528 710 46 5 3075.304970964845 3075.292478757328 1850 gi|16764321|ref|NP_459936.1| cell division protein [Salmonella typhimurium LT2] 148381.19957180542 212 236 W.VDDEEYDDEYDEETDGVQRESRRAR.I 0 15.0 14.0 1.4230496857804652E-14 3.365061871374429E-11 0.0
/home/xiaowen/c_project/proteomics_cpp/testcases/data/st_no_digestion.msalign 1502 2079 2778 35 8 8375.3305071875 8375.250936704102 2828 gi|39546317|ref|NP_460424.2| putative cytoplasmic protein [Salmonella typhimurium LT2] 9025.52433605713 6 76 Y.MTVQDYLLKFRKISSLESLEKLFDHLNYTLTDDMDIVNMYRAADHRRAELVSGGRLFDVGQVPQSVWRYVQ. 0 17.0 15.0 7.058415190981165E-13 3.529207595490583E-11 0.0
/home/xiaowen/c_project/proteomics_cpp/testcases/data/st_no_digestion.msalign 257 655 879 47 5 2823.506264910156 2823.499983029786 354 gi|16763570|ref|NP_459185.1| aspartate 1-decarboxylase [Salmonella typhimurium LT2] 13992.038381772461 1 24 .MIRTMLQGKLHRVKVTQADLHYEG.S 0 18.0 17.0 4.510155675694135E-13 3.608124540555308E-11 0.0
/home/xiaowen/c_project/proteomics_cpp/testcases/data/st_no_digestion.msalign 36 409 551 67 7 4507.49463507422 4507.49463507422 6598 gi|16766708|ref|NP_462323.1| 50S ribosomal subunit protein X [Salmonella typhimurium LT2] 4532.514040189209 1 38 .MKVRASVKKL(C)[-25.02]RNCKIVKRDGVIRVICSAEPKHKQRQG. 1 18.0 15.0 1.4678900382206641E-9 3.6369305508410846E-11 0.0
/home/xiaowen/c_project/proteomics_cpp/testcases/data/st_no_digestion.msalign 87 464 624 64 14 11080.919754304687 11080.919754304687 2302 gi|16764546|ref|NP_460161.1| 50S ribosomal subunit protein L32 [Salmonella typhimurium LT2] 6442.431486325683 2 57 M.AVQQNKPTRSKRGMRRSHDALTA(V)[4769.53]TSLSVDKTSGEKHLRHHITADGYYRGRKVIAK. 1 18.0 17.0 2.709022056238562E-12 4.026138608121421E-11 0.0
/home/xiaowen/c_project/proteomics_cpp/testcases/data/st_no_digestion.msalign 233 631 847 80 10 6250.606753789063 6250.606753789063 7204 gi|16767012|ref|NP_462627.1| 50S ribosomal subunit protein L33 [Salmonella typhimurium LT2] 6367.619703488769 2 55 M.(AK)[14.03]GIREKIKLVSSAGTGHFYTTTKNKRTKPEKLELKKFDPVVRQHVIYKEAKIK. 1 16.0 15.0 3.341319021846116E-10 4.125085212155698E-11 0.0
/home/xiaowen/c_project/proteomics_cpp/testcases/data/st_no_digestion.msalign 524 931 1247 104 9 6394.601360511719 6394.596360511719 6604 gi|16766711|ref|NP_462326.1| 50S ribosomal subunit protein L30 [Salmonella typhimurium LT2] 6509.614042478027 2 59 M.AKTIKITQTRSAIGRLPKHKATLLGLGLRRIGHTVEREDTPAVRGM(VN)[16.02]AVSFMVKVEE. 1 34.0 23.0 1.8300667671000013E-10 4.537355620909094E-11 0.0
/home/xiaowen/c_project/proteomics_cpp/testcases/data/st_no_digestion.msalign 1598 2212 2955 62 9 9191.654969367186 9191.654969367186 7882 gi|16767354|ref|NP_462969.1| putative cytoplasmic protein [Salmonella typhimurium LT2] 9306.687360959473 2 79 M.SLEVFEKLEAKVQQAIDTITLLQMEIEELKEKNNSLTQEVQSAQHQREELERENNSLKEQQSGWQER(LQALLGRMEEV)[16.01]. 1 23.0 20.0 1.6099977089106403E-10 4.566538956182907E-11 0.0
/home/xiaowen/c_project/proteomics_cpp/testcases/data/st_no_digestion.msalign 718 1133 1516 98 8 6509.64014409375 6509.614042478027 6604 gi|16766711|ref|NP_462326.1| 50S ribosomal subunit protein L30 [Salmonella typhimurium LT2] 6509.614042478027 1 59 .MAKTIKITQTRSAIGRLPKHKATLLGLGLRRIGHTVEREDTPAVRGMVNAVSFMVKVEE. 0 23.0 18.0 2.3127161657319844E-11 4.625432331463969E-11 0.0
/home/xiaowen/c_project/proteomics_cpp/testcases/data/st_no_digestion.msalign 9 381 514 75 8 4548.512079312499 4548.512079312499 6598 gi|16766708|ref|NP_462323.1| 50S ribosomal subunit protein X [Salmonella typhimurium LT2] 4532.514040189209 1 38 .(MKVRASV)[16.00]KKLCRNCKIVKRDGVIRVICSAEPKHKQRQG. 1 21.0 17.0 3.5338395147324485E-10 4.988949903151692E-11 0.0
/home/xiaowen/c_project/proteomics_cpp/testcases/data/st_no_digestion.msalign 1886 2725 3639 47 11 12217.51667709375 12217.51667709375 7986 gi|16767406|ref|NP_463021.1| 50S ribosomal subunit protein L7/L12 [Salmonella typhimurium LT2] 12291.470907407227 2 121 M.(SITKDQII)[42.01]EAVS(A)[15.08]MSVMDVVELISAMEEKFGVSAAAAVAVAAGPAEAAEEKTEFDVILKAAGANKVAVIKAVRGATGLGLKEAKDLVESAPAALKEGVSKDDAEALKKSLEEAGAEVEVK. 1 27.0 19.0 2.0807312102478127E-10 5.097985563167799E-11 0.0
/home/xiaowen/c_project/proteomics_cpp/testcases/data/st_no_digestion.msalign 709 1124 1504 58 9 6509.650751394532 6509.614042478027 6604 gi|16766711|ref|NP_462326.1| 50S ribosomal subunit protein L30 [Salmonella typhimurium LT2] 6509.614042478027 1 59 .MAKTIKITQTRSAIGRLPKHKATLLGLGLRRIGHTVEREDTPAVRGMVNAVSFMVKVEE. 0 21.0 15.0 2.6017912042222505E-11 5.203582408444501E-11 0.0
/home/xiaowen/c_project/proteomics_cpp/testcases/data/st_no_digestion.msalign 285 685 919 51 4 3455.5762935625 3455.5653593115203 3040 gi|16764916|ref|NP_460531.1| putative outer membrane porin precursor [Salmonella typhimurium LT2] 39655.11356945556 22 52 A.AEVYNKDGNKLDLYGKVHAQHYFSDDNGSDG.D 0 18.0 14.0 2.0841262351562753E-14 5.217031937003945E-11 0.0
/home/xiaowen/c_project/proteomics_cpp/testcases/data/st_no_digestion.msalign 1123 1591 2127 147 17 9229.091423308595 9229.012678342286 5168 gi|16765991|ref|NP_461606.1| 30S ribosomal subunit protein S16 [Salmonella typhimurium LT2] 9229.012678342286 1 82 .MVTIRLARHGAKKRPFYQVVVTDSRNARNGRFIERVGFFNPIASEKEEGTRLDLDRIAHWVGQGATISDRVAALIKEVKKAA. 0 23.0 17.0 2.616375728507756E-11 5.232751457015512E-11 0.0
/home/xiaowen/c_project/proteomics_cpp/testcases/data/st_no_digestion.msalign 676 1091 1460 105 8 6378.59771821875 6378.573545651855 6604 gi|16766711|ref|NP_462326.1| 50S ribosomal subunit protein L30 [Salmonella typhimurium LT2] 6509.614042478027 2 59 M.AKTIKITQTRSAIGRLPKHKATLLGLGLRRIGHTVEREDTPAVRGMVNAVSFMVKVEE. 0 24.0 18.0 5.6652737694104186E-11 5.6652737694104186E-11 0.0
/home/xiaowen/c_project/proteomics_cpp/testcases/data/st_no_digestion.msalign 64 437 588 105 13 6311.420443560547 6311.390989499511 2302 gi|16764546|ref|NP_460161.1| 50S ribosomal subunit protein L32 [Salmonella typhimurium LT2] 6442.431486325683 2 57 M.AVQQNKPTRSKRGMRRSHDALTAVTSLSVDKTSGEKHLRHHITADGYYRGRKVIAK. 0 22.0 15.0 5.6967717297801925E-11 5.6967717297801925E-11 0.0
/home/xiaowen/c_project/proteomics_cpp/testcases/data/st_no_digestion.msalign 545 952 1275 103 10 6394.600859414062 6394.575859414063 6604 gi|16766711|ref|NP_462326.1| 50S ribosomal subunit protein L30 [Salmonella typhimurium LT2] 6509.614042478027 2 59 M.AKTIKITQTRSAIGRLPKHKATLLGLGLRRIGHTVEREDTPAVRGMVNAVSF(M)[16.00]VKVEE. 1 33.0 22.0 2.3175136339113638E-10 5.852307156341828E-11 0.0
/home/xiaowen/c_project/proteomics_cpp/testcases/data/st_no_digestion.msalign 1945 2889 3858 14 4 6121.11904371875 6121.108686643067 7986 gi|16767406|ref|NP_463021.1| 50S ribosomal subunit protein L7/L12 [Salmonella typhimurium LT2] 12291.470907407227 2 60 M.(S)[42.01]ITKDQIIEAVSAMSVMDVVELISAMEEKFGVSAAAAVAVAAGPAEAAEEKTEFDVILK.A 0 14.0 14.0 5.450076522161519E-13 5.940583409156056E-11 0.0
/home/xiaowen/c_project/proteomics_cpp/testcases/data/st_no_digestion.msalign 870 1290 1726 103 10 8947.88260464844 8947.88260464844 8452 gi|16767639|ref|NP_463254.1| 30S ribosomal subunit protein S18 [Salmonella typhimurium LT2] 9122.931947904053 2 75 M.(ARYFR)[42.01]RRKFCRFTAEGVQEIDYKDIATLKNY(ITESGKIVPSRI)[-86.02]TGTRAKYQRQLRRAIKRARYLSLLPYTDRHQ. 1 28.0 23.0 4.0165075741093733E-10 6.474855572412316E-11 0.0
/home/xiaowen/c_project/proteomics_cpp/testcases/data/st_no_digestion.msalign 695 1110 1486 106 8 6378.6011361875 6378.573545651855 6604 gi|16766711|ref|NP_462326.1| 50S ribosomal subunit protein L30 [Salmonella typhimurium LT2] 6509.614042478027 2 59 M.AKTIKITQTRSAIGRLPKHKATLLGLGLRRIGHTVEREDTPAVRGMVNAVSFMVKVEE. 0 27.0 19.0 6.720062908134645E-11 6.720062908134645E-11 0.0
/home/xiaowen/c_project/proteomics_cpp/testcases/data/st_no_digestion.msalign 1499 2076 2774 45 13 10600.360375843751 10600.277429776612 5878 gi|16766348|ref|NP_461963.1| putative cytoplasmic protein [Salmonella typhimurium LT2] 10600.277429776612 1 88 .MDIHNKARIHWACRRGMRELDISIMPFFEHEYDSLSDEEKRIFVRLLQSDDPDLFNWLMNHGKPADAELEQMVRLIQTRNRERGPVAI. 0 20.0 12.0 3.5174777558907294E-11 7.034955511781459E-11 0.0
/home/xiaowen/c_project/proteomics_cpp/testcases/data/st_no_digestion.msalign 1241 1730 2312 31 10 6478.511692492187 6478.460607724609 3498 gi|16765150|ref|NP_460765.1| putative cytoplasmic protein [Salmonella typhimurium LT2] 6478.460607724609 1 57 .MNSEELTHKAEEEIAALISKKVAELRKKTGQEVSEIEFAPRETMKGLEGYHVKIKLL. 0 13.0 12.0 3.5430856967480536E-11 7.086171393496107E-11 0.0
/home/xiaowen/c_project/proteomics_cpp/testcases/data/st_no_digestion.msalign 1653 2280 3046 83 13 11210.843416546875 11210.843416546875 4466 gi|16765638|ref|NP_461253.1| putative inner membrane protein [Salmonella typhimurium LT2] 11629.921674924317 2 103 M.RMSYQFGESRVD(DDLTL)[-288.04]LSETLEEVLRSSGDPADQKYIELKARAEQALEEVKNRVSHASDSYYYRAKQAVYKADDYVHEKPWQGIGVGAAVGLVLGLLLARR. 1 25.0 19.0 6.59946370592526E-11 7.26750757799745E-11 0.0
/home/xiaowen/c_project/proteomics_cpp/testcases/data/st_no_digestion.msalign 401 807 1082 130 11 7825.97154454297 7825.97154454297 7898 gi|16767362|ref|NP_462977.1| 50S ribosomal subunit protein L31 [Salmonella typhimurium LT2] 7941.9762403540035 1 70 .MKKGIHPNYVEITATCSCGNVIKTHSTVGHDLNLDVCG(KCH)[-116.00]PFFTGKQRVVDTGGRVERFNKRFSIPGSK. 1 29.0 23.0 3.7148870392326944E-10 7.840976820831833E-11 0.0
/home/xiaowen/c_project/proteomics_cpp/testcases/data/st_no_digestion.msalign 298 698 936 140 12 8420.731801109378 8420.707170682374 6198 gi|16766509|ref|NP_462124.1| 30S ribosomal subunit protein S21 [Salmonella typhimurium LT2] 8551.747667508545 2 71 M.PVIKVRENEPFDVALRRFKRSCEKAGVLAEVRRREFYEKPTTERKRAKASAVKRHAKKLARENARRTRLY. 0 26.0 18.0 7.844987008593683E-11 7.844987008593683E-11 0.0
/home/xiaowen/c_project/proteomics_cpp/testcases/data/st_no_digestion.msalign 149 536 720 23 4 2848.16533434375 2848.1542646460002 1850 gi|16764321|ref|NP_459936.1| cell division protein [Salmonella typhimurium LT2] 148381.19957180542 212 234 W.VDDEEYDDEYDEETDGVQRESRR.A 0 14.0 11.0 3.8435069610187365E-14 8.172588423546286E-11 0.0
/home/xiaowen/c_project/proteomics_cpp/testcases/data/st_no_digestion.msalign 34 406 547 64 8 4507.49205878125 4507.49205878125 6598 gi|16766708|ref|NP_462323.1| 50S ribosomal subunit protein X [Salmonella typhimurium LT2] 4532.514040189209 1 38 .MKVRASVK(KLC)[-25.02]RNCKIVKRDGVIRVICSAEPKHKQRQG. 1 17.0 15.0 3.1105834253331227E-9 8.220413592274558E-11 0.0
/home/xiaowen/c_project/proteomics_cpp/testcases/data/st_no_digestion.msalign 867 1287 1722 146 12 8948.895762609376 8948.895762609376 8452 gi|16767639|ref|NP_463254.1| 30S ribosomal subunit protein S18 [Salmonella typhimurium LT2] 9122.931947904053 2 75 M.(ARYFRRRKFCRFTAEGV)[42.01]QEIDYKDIATLKNYITE(SGKIVPSRITGTRAKYQRQLRRAIKRARYLSLL)[-85.01]PYTDRHQ. 1 33.0 22.0 5.135184033172709E-10 8.278230362835523E-11 0.0
/home/xiaowen/c_project/proteomics_cpp/testcases/data/st_no_digestion.msalign 1644 2270 3032 78 11 9261.102626605472 9261.072626605472 870 gi|16763832|ref|NP_459447.1| DNA-binding protein HU-beta [Salmonella typhimurium LT2] 9234.010030942383 1 90 .(MN)[28.00]KSQLIEKIAAGADISKAAAGRALDAIIASVTESLKEGDDV(AL)[-.94]VGFGTFAVKERAARTGRNPQTGKEITIAAAKVPSFRAGKALKDAVN. 2 25.0 25.0 7.618374367216193E-12 8.345971919141336E-11 0.0
/home/xiaowen/c_project/proteomics_cpp/testcases/data/st_no_digestion.msalign 1976 3121 4167 78 10 11759.496223062502 11759.412664609375 6642 gi|16766730|ref|NP_462345.1| 30S ribosomal subunit protein S10 [Salmonella typhimurium LT2] 11759.412664609375 1 103 .MQNQRIRIRLKAFDHRLIDQSTAEIVETAKRTGAQVRGPIPLPTRKERFTVLISPHVNKDARDQYEIRTHKRLVDIVEPTEKTVDALMRLDLAAGVDVQISLG. 0 21.0 19.0 2.097985664216843E-11 8.391942656867372E-11 0.0
/home/xiaowen/c_project/proteomics_cpp/testcases/data/st_no_digestion.msalign 1647 2274 3038 96 14 11210.834065351562 11210.834065351562 4466 gi|16765638|ref|NP_461253.1| putative inner membrane protein [Salmonella typhimurium LT2] 11629.921674924317 4 103 M.SYQFGESR(VDDDLT)[-.91]LLSETLEEVLRSSGDPADQKYIELKARAEQALEEVKNRVSHASDSYYYRAKQAVYKADDYVHEKPWQGIGVGAAVGLVLGLLLARR. 1 25.0 21.0 3.485993308531917E-12 8.672764429545183E-11 0.0
/home/xiaowen/c_project/proteomics_cpp/testcases/data/st_no_digestion.msalign 336 736 987 135 13 9628.742765167968 9628.722135739747 738 gi|16763764|ref|NP_459379.1| phosphate starvation-inducible protein [Salmonella typhimurium LT2] 11830.048254208985 22 106 A.TEKPLTPQQQRMTTCNQQATAQALKGDARKTYLSDCLKNSQSAPGEKSLTPQQQKMRECNVQATEQSLKGDDRSKFMSACLKKAA. 0 27.0 23.0 4.083767017065476E-12 8.984287437544048E-11 0.0
/home/xiaowen/c_project/proteomics_cpp/testcases/data/st_no_digestion.msalign 1532 2123 2836 41 12 9250.093197375003 9250.033197375004 870 gi|16763832|ref|NP_459447.1| DNA-binding protein HU-beta [Salmonella typhimurium LT2] 9234.010030942383 1 90 .M(NKSQLIEKIAAGADISKAAAGRALDAI)[16.02]IASVTESLKEGDDVALVGFGTFAVKERAARTGRNPQTGKEITIAAAKVPSFRAGKALKDAVN. 1 16.0 16.0 2.511015950005468E-10 9.247367521266594E-11 0.0
/home/xiaowen/c_project/proteomics_cpp/testcases/data/st_no_digestion.msalign 1862 2660 3552 31 16 12291.577454062499 12291.470907407227 7986 gi|16767406|ref|NP_463021.1| 50S ribosomal subunit protein L7/L12 [Salmonella typhimurium LT2] 12291.470907407227 1 121 .MSITKDQIIEAVSAMSVMDVVELISAMEEKFGVSAAAAVAVAAGPAEAAEEKTEFDVILKAAGANKVAVIKAVRGATGLGLKEAKDLVESAPAALKEGVSKDDAEALKKSLEEAGAEVEVK. 0 18.0 11.0 4.893903219071029E-11 9.787806438142058E-11 0.0
/home/xiaowen/c_project/proteomics_cpp/testcases/data/st_no_digestion.msalign 23 395 532 75 6 4532.527233664063 4532.5140401892095 6598 gi|16766708|ref|NP_462323.1| 50S ribosomal subunit protein X [Salmonella typhimurium LT2] 4532.514040189209 1 38 .MKVRASVKKLCRNCKIVKRDGVIRVICSAEPKHKQRQG. 0 19.0 15.0 4.897467348956239E-11 9.794934697912478E-11 0.0
/home/xiaowen/c_project/proteomics_cpp/testcases/data/st_no_digestion.msalign 61 434 584 105 12 6311.411392656252 6311.390989499512 2302 gi|16764546|ref|NP_460161.1| 50S ribosomal subunit protein L32 [Salmonella typhimurium LT2] 6442.431486325683 2 57 M.AVQQNKPTRSKRGMRRSHDALTAVTSLSVDKTSGEKHLRHHITADGYYRGRKVIAK. 0 25.0 16.0 1.2059379012697315E-10 1.2059379012697315E-10 0.0
/home/xiaowen/c_project/proteomics_cpp/testcases/data/st_no_digestion.msalign 821 1239 1658 71 13 10657.597972707032 10657.597972707032 3628 gi|16765217|ref|NP_460832.1| putative copper resistance protein [Salmonella typhimurium LT2] 13312.989523129883 27 124 A.HAHLTHQYPAANAAVTASPQA(LT)[-.95]LNFSEGIEPGFSGATITGPQQELIKTRPAKRNEQDKTQLIIPLEQPLKSGAYTVDWHVVSVDGHKTKGKYTFSVK. 1 26.0 20.0 5.1925812249665856E-12 1.2340051778214046E-10 0.0
/home/xiaowen/c_project/proteomics_cpp/testcases/data/st_no_digestion.msalign 1498 2075 2772 55 14 10599.395580312499 10599.315580312501 5878 gi|16766348|ref|NP_461963.1| putative cytoplasmic protein [Salmonella typhimurium LT2] 10600.277429776612 1 88 .MDIHNKARIHWACRRGMRELD(IS)[-.96]IMPFFEHEYDSLSDEEKRIFVRLLQSDDPDLFNWLMNHGKPADAELEQMVRLIQTRNRERGPVAI. 1 22.0 15.0 6.508426109940766E-10 1.243048490178713E-10 0.0
/home/xiaowen/c_project/proteomics_cpp/testcases/data/st_no_digestion.msalign 1670 2298 3070 75 13 10947.950009523438 10947.867208676758 6236 gi|16766528|ref|NP_462143.1| putative inner membrane protein [Salmonella typhimurium LT2] 11078.90770550293 2 101 M.SKDNTTEHLRAELKSLTDTLEEVLSSSGEKSKEELSKIRSKAERALKESRYRLGETGDVIAKQTRVAAARADDYVRENPWTGVGIGAAVGLVLGVLLTRR. 0 19.0 17.0 1.251344652948858E-10 1.251344652948858E-10 0.0
/home/xiaowen/c_project/proteomics_cpp/testcases/data/st_no_digestion.msalign 37 410 552 73 6 4507.493793398438 4507.493793398438 6598 gi|16766708|ref|NP_462323.1| 50S ribosomal subunit protein X [Salmonella typhimurium LT2] 4532.514040189209 1 38 .MKVRASVKKL(C)[-25.02]RNCKIVKRDGVIRVICSAEPKHKQRQG. 1 17.0 16.0 5.246345745347172E-9 1.2998654275668527E-10 0.0
/home/xiaowen/c_project/proteomics_cpp/testcases/data/st_no_digestion.msalign 1094 1548 2070 148 11 9229.086861535157 9229.012678342286 5168 gi|16765991|ref|NP_461606.1| 30S ribosomal subunit protein S16 [Salmonella typhimurium LT2] 9229.012678342286 1 82 .MVTIRLARHGAKKRPFYQVVVTDSRNARNGRFIERVGFFNPIASEKEEGTRLDLDRIAHWVGQGATISDRVAALIKEVKKAA. 0 20.0 19.0 6.952282147446084E-11 1.3904564294892167E-10 0.0
/home/xiaowen/c_project/proteomics_cpp/testcases/data/st_no_digestion.msalign 11 383 516 75 9 4548.513409269531 4548.513409269531 6598 gi|16766708|ref|NP_462323.1| 50S ribosomal subunit protein X [Salmonella typhimurium LT2] 4532.514040189209 1 38 .(M)[16.00]KVRASVKKLCRNCKIVKRDGVIRVICSAEPKHKQRQG. 1 16.0 14.0 9.664557853575574E-10 1.399392992372934E-10 0.0
/home/xiaowen/c_project/proteomics_cpp/testcases/data/st_no_digestion.msalign 670 1085 1452 88 10 8969.911404242192 8969.911404242192 7206 gi|16767013|ref|NP_462628.1| 50S ribosomal subunit protein L28 [Salmonella typhimurium LT2] 9101.921114163819 2 78 M.SRVCQVTGKR(PVTGN)[-.97]NRSHALNATKRRFLPNLHSHRFWVESEKRFVTLRVSAKGMRIIDKKGIETVLSELRARGEKY. 1 17.0 17.0 9.323732271615689E-10 1.4287735674986694E-10 0.0
/home/xiaowen/c_project/proteomics_cpp/testcases/data/st_no_digestion.msalign 296 696 934 140 14 8420.73555965625 8420.707170682374 6198 gi|16766509|ref|NP_462124.1| 30S ribosomal subunit protein S21 [Salmonella typhimurium LT2] 8551.747667508545 2 71 M.PVIKVRENEPFDVALRRFKRSCEKAGVLAEVRRREFYEKPTTERKRAKASAVKRHAKKLARENARRTRLY. 0 23.0 17.0 1.444742588171989E-10 1.444742588171989E-10 0.0
/home/xiaowen/c_project/proteomics_cpp/testcases/data/st_no_digestion.msalign 883 1304 1744 96 11 10059.494645925783 10059.494645925783 6342 gi|16766581|ref|NP_462196.1| 30S ribosomal subunit protein S15 [Salmonella typhimurium LT2] 10191.46906109375 2 89 M.(SL)[-.93]STEATAKIVSEFGRDANDTGSTDVQVALLTAQINHLQGHFAEHKKDHHSRRGLLRMVSQRRKLLDYLKRKDVARYTALIERLGLRR. 1 24.0 20.0 1.4908274667510513E-9 1.462861006335808E-10 0.0
/home/xiaowen/c_project/proteomics_cpp/testcases/data/st_no_digestion.msalign 622 1031 1380 189 15 11527.35570405078 11527.32570405078 6614 gi|39546367|ref|NP_462331.2| 30S ribosomal subunit protein S14 [Salmonella typhimurium LT2] 11113.053682523194 1 96 .(MKAREVKR)[42.01](VALAD)[372.26]KYFAKRAELKAIISDVNATDEDRWNAVLKLQTLPRDSSPSRQRNRCRQTGRPHAFLRKFGLSRIKVREAAMRGEIPGLKKASW. 1 35.0 27.0 1.0746501575335424E-10 1.5273540761995292E-10 0.0
/home/xiaowen/c_project/proteomics_cpp/testcases/data/st_no_digestion.msalign 697 1112 1488 64 8 7655.99028975 7655.959249692383 702 gi|16763746|ref|NP_459361.1| putative periplasmic protein [Salmonella typhimurium LT2] 9913.159528928223 22 91 A.AEIMKKTDFDKVASEYTKIGTISTTGEMSPLDAREDLIKKADEKGADVVVLTSGQTENKIHGTADIYKKK. 0 20.0 17.0 5.491471116744172E-12 1.5376119126883682E-10 0.0
/home/xiaowen/c_project/proteomics_cpp/testcases/data/st_no_digestion.msalign 864 1284 1718 147 16 8948.897176187498 8948.892176187499 8452 gi|16767639|ref|NP_463254.1| 30S ribosomal subunit protein S18 [Salmonella typhimurium LT2] 9122.931947904053 2 75 M.(ARYFRRRKFCRFTA)[42.01]EGVQEIDYKDIATLKNYITE(SGKIVPSRITGTRAKYQ)[-85.01]RQLRRAIKRARYLSLLPYTDRHQ. 1 35.0 25.0 1.0140991756734702E-9 1.634789821115697E-10 0.0
/home/xiaowen/c_project/proteomics_cpp/testcases/data/st_no_digestion.msalign 301 701 940 140 12 8420.730336265628 8420.707170682374 6198 gi|16766509|ref|NP_462124.1| 30S ribosomal subunit protein S21 [Salmonella typhimurium LT2] 8551.747667508545 2 71 M.PVIKVRENEPFDVALRRFKRSCEKAGVLAEVRRREFYEKPTTERKRAKASAVKRHAKKLARENARRTRLY. 0 26.0 19.0 1.7659337474164386E-10 1.7659337474164386E-10 0.0
/home/xiaowen/c_project/proteomics_cpp/testcases/data/st_no_digestion.msalign 115 500 672 80 11 6310.428251175781 6310.423251175781 2302 gi|16764546|ref|NP_460161.1| 50S ribosomal subunit protein L32 [Salmonella typhimurium LT2] 6442.431486325683 2 57 M.AVQQNKPTRSKRGMRRSHDALT(A)[-.97]VTSLSVDKTSGEKHLRHHITADGYYRGRKVIAK. 1 20.0 15.0 2.6316932061111556E-9 1.774516022178495E-10 0.0
/home/xiaowen/c_project/proteomics_cpp/testcases/data/st_no_digestion.msalign 863 1283 1716 133 15 8948.905794960936 8948.885794960936 8452 gi|16767639|ref|NP_463254.1| 30S ribosomal subunit protein S18 [Salmonella typhimurium LT2] 9122.931947904053 2 75 M.(ARYFRRRKFCRFTAEG)[42.01]VQEIDYKDIATLKNYITESGK(IVPSRITGTRAKYQRQLRRAIKRARYLSL)[-85.02]LPYTDRHQ. 1 27.0 22.0 1.1543940191635613E-9 1.8364674466200109E-10 0.0
/home/xiaowen/c_project/proteomics_cpp/testcases/data/st_no_digestion.msalign 702 1117 1495 100 6 6378.599819046875 6378.573545651856 6604 gi|16766711|ref|NP_462326.1| 50S ribosomal subunit protein L30 [Salmonella typhimurium LT2] 6509.614042478027 2 59 M.AKTIKITQTRSAIGRLPKHKATLLGLGLRRIGHTVEREDTPAVRGMVNAVSFMVKVEE. 0 23.0 15.0 1.936741436947521E-10 1.936741436947521E-10 0.0
/home/xiaowen/c_project/proteomics_cpp/testcases/data/st_no_digestion.msalign 1107 1566 2094 150 11 9229.068734093751 9229.012678342286 5168 gi|16765991|ref|NP_461606.1| 30S ribosomal subunit protein S16 [Salmonella typhimurium LT2] 9229.012678342286 1 82 .MVTIRLARHGAKKRPFYQVVVTDSRNARNGRFIERVGFFNPIASEKEEGTRLDLDRIAHWVGQGATISDRVAALIKEVKKAA. 0 18.0 17.0 1.0234992700869768E-10 2.0469985401739536E-10 0.0
/home/xiaowen/c_project/proteomics_cpp/testcases/data/st_no_digestion.msalign 691 1106 1480 105 12 6378.6096298437515 6378.573545651856 6604 gi|16766711|ref|NP_462326.1| 50S ribosomal subunit protein L30 [Salmonella typhimurium LT2] 6509.614042478027 2 59 M.AKTIKITQTRSAIGRLPKHKATLLGLGLRRIGHTVEREDTPAVRGMVNAVSFMVKVEE. 0 35.0 16.0 2.0850779609998999E-10 2.0850779609998999E-10 0.0
/home/xiaowen/c_project/proteomics_cpp/testcases/data/st_no_digestion.msalign 306 706 947 140 13 8420.723243371094 8420.707170682374 6198 gi|16766509|ref|NP_462124.1| 30S ribosomal subunit protein S21 [Salmonella typhimurium LT2] 8551.747667508545 2 71 M.PVIKVRENEPFDVALRRFKRSCEKAGVLAEVRRREFYEKPTTERKRAKASAVKRHAKKLARENARRTRLY. 0 21.0 17.0 2.2129180333442864E-10 2.2129180333442864E-10 0.0
/home/xiaowen/c_project/proteomics_cpp/testcases/data/st_no_digestion.msalign 152 539 724 90 11 6311.406461625 6311.390989499511 2302 gi|16764546|ref|NP_460161.1| 50S ribosomal subunit protein L32 [Salmonella typhimurium LT2] 6442.431486325683 2 57 M.AVQQNKPTRSKRGMRRSHDALTAVTSLSVDKTSGEKHLRHHITADGYYRGRKVIAK. 0 20.0 16.0 2.2546499368437545E-10 2.2546499368437545E-10 0.0
/home/xiaowen/c_project/proteomics_cpp/testcases/data/st_no_digestion.msalign 535 942 1262 53 10 7079.478990718749 7079.478990718749 748 gi|16763769|ref|NP_459384.1| putative cytoplasmic protein [Salmonella typhimurium LT2] 7222.519148068847 2 63 M.PTRPPYPREAYIVTIEKGTPGQTVTWYQLRADHPK(PDSLISEH)[-12.00]PTAEEAMDAKNRYEDPDKS. 1 14.0 12.0 3.882245221593986E-9 2.2632874310622616E-10 0.0
/home/xiaowen/c_project/proteomics_cpp/testcases/data/st_no_digestion.msalign 1576 2175 2906 11 16 13295.160101999998 13294.998323636475 4820 gi|16765815|ref|NP_461430.1| putative arsenate reductase [Salmonella typhimurium LT2] 13426.038820462647 2 119 M.TDTIKIYHNPRCSKSRDTLNLLKSNGVEPEVVLYLDTPADAATVRELLRMLGMSSARELMRQKEDLYKTLHLADSELSEEALIQALVEHPKLMERPIVVANGQARIGRPPEQVLDILG. 0 8.0 8.0 2.2682459388182952E-10 2.2682459388182952E-10 0.0
/home/xiaowen/c_project/proteomics_cpp/testcases/data/st_no_digestion.msalign 1244 1733 2316 47 8 6478.508300156249 6478.460607724609 3498 gi|16765150|ref|NP_460765.1| putative cytoplasmic protein [Salmonella typhimurium LT2] 6478.460607724609 1 57 .MNSEELTHKAEEEIAALISKKVAELRKKTGQEVSEIEFAPRETMKGLEGYHVKIKLL. 0 14.0 14.0 1.1780782842711514E-10 2.356156568542303E-10 0.0
/home/xiaowen/c_project/proteomics_cpp/testcases/data/st_no_digestion.msalign 716 1131 1514 47 9 6509.640314382813 6509.614042478027 6604 gi|16766711|ref|NP_462326.1| 50S ribosomal subunit protein L30 [Salmonella typhimurium LT2] 6509.614042478027 1 59 .MAKTIKITQTRSAIGRLPKHKATLLGLGLRRIGHTVEREDTPAVRGMVNAVSFMVKVEE. 0 20.0 14.0 1.185192592276339E-10 2.370385184552678E-10 0.0
/home/xiaowen/c_project/proteomics_cpp/testcases/data/st_no_digestion.msalign 1661 2288 3056 144 11 12106.086636382814 12105.95568295044 938 gi|16763865|ref|NP_459480.1| putative cytoplasmic protein [Salmonella typhimurium LT2] 12063.945116239014 1 109 .(M)[42.01]FGKGGLGNLMKQAQQMQEKMQKMQEEIAQLEVTGESGAGLVKVTINGAHNCRRVEIDPSLLEDDKEMLEDLVAAAFNDAARRIEETQKEKMASVSSGMQLPPGFKMPF. 0 26.0 23.0 1.1946502077074781E-10 2.3893004154149563E-10 0.0
/home/xiaowen/c_project/proteomics_cpp/testcases/data/st_no_digestion.msalign 737 1153 1543 131 11 9517.343356296878 9517.343356296878 86 gi|16763433|ref|NP_459048.1| 30S ribosomal subunit protein S20 [Salmonella typhimurium LT2] 9649.330160336915 2 87 M.ANIKSAKKRAVQSEKARKHNASRRSMMRTFIKKVYAAIEAGDKAA(A)[-.95]LKAFNEMQPIVDRQAAKGLIHKNKAARHKANLTAQINKLA. 1 22.0 19.0 1.889928560391066E-9 2.470732329262568E-10 0.0
/home/xiaowen/c_project/proteomics_cpp/testcases/data/st_no_digestion.msalign 765 1181 1580 53 15 10278.698373871093 10278.658636289065 6632 gi|16766725|ref|NP_462340.1| 30S ribosomal subunit protein S19 [Salmonella typhimurium LT2] 10409.699133115235 2 92 M.PRSLKKGPFIDLHLLKKVEKAVESGDKKPLRTWSRRSTIFPNMIGLTIAVHNGRQHVPVFVSDEMVGHKLGEFAPTRTYRGHAADKKAKKK. 0 15.0 11.0 2.5170880557471574E-10 2.5170880557471574E-10 0.0
/home/xiaowen/c_project/proteomics_cpp/testcases/data/st_no_digestion.msalign 593 1001 1340 166 11 9966.88357294141 9966.83842297119 2906 gi|16764848|ref|NP_460463.1| putative periplasmic protein [Salmonella typhimurium LT2] 13009.40887661499 29 113 A.ETSKLVIESGDSAQSRQEAAMEKEQWNDTRSLRQKVNTRAEKEWDKADAAFDNRDKCEQSANINAYWEPNTLRCLDRRTGRVITP. 0 27.0 24.0 1.560326032589886E-11 2.8085868586617953E-10 0.0
/home/xiaowen/c_project/proteomics_cpp/testcases/data/st_no_digestion.msalign 1340 1855 2479 83 8 12043.1884504375 12043.1884504375 7904 gi|16767365|ref|NP_462980.1| transcriptional repressor [Salmonella typhimurium LT2] 12173.194353299561 2 105 M.AEWSGEYISPYAEHGKKSEQVK(K)[1.03]ITVSIPLKVLKILTDERTRRQVNNLRHATNSELLCEAFLHAFTGQPLPDDADLRKERSDEIPEAAKEIMRELGIDPETWEY. 1 21.0 20.0 1.5268030027043707E-9 2.814300328119597E-10 0.0
/home/xiaowen/c_project/proteomics_cpp/testcases/data/st_no_digestion.msalign 1235 1723 2303 165 14 11206.305256757812 11206.238477902833 6636 gi|16766727|ref|NP_462342.1| 50S ribosomal subunit protein L23 [Salmonella typhimurium LT2] 11206.238477902833 1 100 .MIREERLLKVLRAPHVSEKASTAMEKTNTIVLKVAKDATKAEIKAAVQKLFEVEVEVVNTLVVKGKVKRHGQRIGRRSDWKKAYVTLKEGQNLDFVGGAE. 0 30.0 21.0 1.4163625439568485E-10 2.832725087913697E-10 0.0
/home/xiaowen/c_project/proteomics_cpp/testcases/data/st_no_digestion.msalign 1564 2157 2882 93 9 9233.078891562498 9233.058891562498 870 gi|16763832|ref|NP_459447.1| DNA-binding protein HU-beta [Salmonella typhimurium LT2] 9234.010030942383 1 90 .MNKSQLIEKIAAGADISKAAAGRALDAI(IASV)[-.95]TESLKEGDDVALVGFGTFAVKERAARTGRNPQTGKEITIAAAKVPSFRAGKALKDAVN. 1 25.0 22.0 1.946647495841771E-9 2.921656815002081E-10 0.0
/home/xiaowen/c_project/proteomics_cpp/testcases/data/st_no_digestion.msalign 1773 2474 3304 62 7 8095.207952375 8095.207952375 4302 gi|16765556|ref|NP_461171.1| putative cytoplasmic protein [Salmonella typhimurium LT2] 8226.193906979981 2 75 M.PQLSRYSDEHVEQLL(SELLSVLEKHKAPTDLSLMV)[-.91]LGNMVTNLINT(S)[.97]VAPAQRQAIANSFARALQSSISEDNAH. 2 19.0 19.0 2.774504336784564E-11 3.2551781318613174E-10 0.0
/home/xiaowen/c_project/proteomics_cpp/testcases/data/st_no_digestion.msalign 1840 2626 3507 75 14 12160.552345210937 12160.430410581057 7986 gi|16767406|ref|NP_463021.1| 50S ribosomal subunit protein L7/L12 [Salmonella typhimurium LT2] 12291.470907407227 2 121 M.SITKDQIIEAVSAMSVMDVVELISAMEEKFGVSAAAAVAVAAGPAEAAEEKTEFDVILKAAGANKVAVIKAVRGATGLGLKEAKDLVESAPAALKEGVSKDDAEALKKSLEEAGAEVEVK. 0 24.0 15.0 3.333202648561618E-10 3.333202648561618E-10 0.0
/home/xiaowen/c_project/proteomics_cpp/testcases/data/st_no_digestion.msalign 678 1093 1463 103 8 6378.60650728125 6378.573545651855 6604 gi|16766711|ref|NP_462326.1| 50S ribosomal subunit protein L30 [Salmonella typhimurium LT2] 6509.614042478027 2 59 M.AKTIKITQTRSAIGRLPKHKATLLGLGLRRIGHTVEREDTPAVRGMVNAVSFMVKVEE. 0 24.0 18.0 3.5074843273355595E-10 3.5074843273355595E-10 0.0
/home/xiaowen/c_project/proteomics_cpp/testcases/data/st_no_digestion.msalign 31 403 543 75 11 4532.534798976561 4532.514040189209 6598 gi|16766708|ref|NP_462323.1| 50S ribosomal subunit protein X [Salmonella typhimurium LT2] 4532.514040189209 1 38 .MKVRASVKKLCRNCKIVKRDGVIRVICSAEPKHKQRQG. 0 19.0 11.0 1.8334816540646165E-10 3.666963308129233E-10 0.0
/home/xiaowen/c_project/proteomics_cpp/testcases/data/st_no_digestion.msalign 1973 3117 4162 98 9 11759.484944374995 11759.412664609375 6642 gi|16766730|ref|NP_462345.1| 30S ribosomal subunit protein S10 [Salmonella typhimurium LT2] 11759.412664609375 1 103 .MQNQRIRIRLKAFDHRLIDQSTAEIVETAKRTGAQVRGPIPLPTRKERFTVLISPHVNKDARDQYEIRTHKRLVDIVEPTEKTVDALMRLDLAAGVDVQISLG. 0 24.0 20.0 9.22775963075814E-11 3.691103852303256E-10 0.0
/home/xiaowen/c_project/proteomics_cpp/testcases/data/st_no_digestion.msalign 294 694 931 140 13 8420.730384484375 8420.707170682374 6198 gi|16766509|ref|NP_462124.1| 30S ribosomal subunit protein S21 [Salmonella typhimurium LT2] 8551.747667508545 2 71 M.PVIKVRENEPFDVALRRFKRSCEKAGVLAEVRRREFYEKPTTERKRAKASAVKRHAKKLARENARRTRLY. 0 21.0 18.0 4.187873896379777E-10 4.187873896379777E-10 0.0
/home/xiaowen/c_project/proteomics_cpp/testcases/data/st_no_digestion.msalign 1216 1704 2278 91 15 10304.611438808595 10304.534986691895 7548 gi|16767186|ref|NP_462801.1| peptidyl-prolyl cis-trans isomerase C [Salmonella typhimurium LT2] 10435.575483518067 2 93 M.AKMAAALHILVKEEKLALDLLEQIKNGGDFEKLAKKHSICPSGKKGGHLGEFRQGQMVPAFDKVVFSCPVLEPTGPLHTQFGYHIIKVLYRK. 0 27.0 16.0 4.24456838227203E-10 4.24456838227203E-10 0.0
/home/xiaowen/c_project/proteomics_cpp/testcases/data/st_no_digestion.msalign 1571 2166 2894 88 7 9646.790988804689 9646.760462003174 468 gi|16763627|ref|NP_459242.1| Rho-dependent transcription termination modulator [Salmonella typhimurium LT2] 9777.800958829346 2 86 M.SMNETYQPINCDDYDSLELACMHHLILTLTLKDGEVLQAKANDLILRKNVEYLLAEVSGESCELRLDKIASFSHPEIGTVVVSES. 0 21.0 18.0 4.2856962362466627E-10 4.2856962362466627E-10 0.0
/home/xiaowen/c_project/proteomics_cpp/testcases/data/st_no_digestion.msalign 598 1006 1347 166 12 9966.886733953128 9966.838422971192 2906 gi|16764848|ref|NP_460463.1| putative periplasmic protein [Salmonella typhimurium LT2] 13009.40887661499 29 113 A.ETSKLVIESGDSAQSRQEAAMEKEQWNDTRSLRQKVNTRAEKEWDKADAAFDNRDKCEQSANINAYWEPNTLRCLDRRTGRVITP. 0 27.0 24.0 2.2859000307742375E-11 4.3432100584710516E-10 0.0
/home/xiaowen/c_project/proteomics_cpp/testcases/data/st_no_digestion.msalign 253 651 874 47 6 2823.507289691406 2823.4999830297857 354 gi|16763570|ref|NP_459185.1| aspartate 1-decarboxylase [Salmonella typhimurium LT2] 13992.038381772461 1 24 .MIRTMLQGKLHRVKVTQADLHYEG.S 0 14.0 12.0 5.289585240755688E-12 4.390355749827221E-10 0.0
/home/xiaowen/c_project/proteomics_cpp/testcases/data/st_no_digestion.msalign 1968 3112 4155 95 10 11758.489142984377 11758.439142984378 6642 gi|16766730|ref|NP_462345.1| 30S ribosomal subunit protein S10 [Salmonella typhimurium LT2] 11759.412664609375 1 103 .MQNQRIRIRLKAFD(HRLID)[-.97]QSTAEIVETAKRTGAQVRGPIPLPTRKERFTVLISPHVNKDARDQYEIRTHKRLVDIVEPTEKTVDALMRLDLAAGVDVQISLG. 1 27.0 23.0 2.1535662860261555E-9 4.5144055543454924E-10 0.0
/home/xiaowen/c_project/proteomics_cpp/testcases/data/st_no_digestion.msalign 1517 2106 2814 72 13 10850.76821579297 10850.697179990235 6412 gi|16766616|ref|NP_462231.1| putative sigma N modulation factor [Salmonella typhimurium LT2] 10850.697179990235 1 95 .MQLNITGHNVEITEALREFVTTKFAKLEQYFERINQVYVVLKVEKVTHISDATLHVNGGEIHASAEGQDMYAAIDGLIDKLARQLTRHKDKLKQH. 0 22.0 14.0 1.5208007046331744E-10 4.562402113899523E-10 0.0
/home/xiaowen/c_project/proteomics_cpp/testcases/data/st_no_digestion.msalign 1056 1495 1999 186 10 11758.446418375002 11758.446418375002 6642 gi|16766730|ref|NP_462345.1| 30S ribosomal subunit protein S10 [Salmonella typhimurium LT2] 11759.412664609375 1 103 .(MQNQ)[-.97]RIRIRLKAFDHRLIDQSTAEIVETAKRTGAQVRGPIPLPTRKERFTVLISPHVNKDARDQYEIRTHKRLVDIVEPTEKTVDALMRLDLAAGVDVQISLG. 1 36.0 28.0 2.2043110837073206E-9 4.61013015202088E-10 0.0
/home/xiaowen/c_project/proteomics_cpp/testcases/data/st_no_digestion.msalign 406 812 1088 101 8 7825.9560800625 7825.9560800625 7898 gi|16767362|ref|NP_462977.1| 50S ribosomal subunit protein L31 [Salmonella typhimurium LT2] 7941.9762403540035 1 70 .MKKGIHPNYVEITA(TCSCGNVIKTHSTVGHDLNLDVCGKCH)[-116.02]PFFTGKQRVVDTGGRVERFNKRFSIPGSK. 1 27.0 23.0 2.3746475099116953E-9 5.012145964661547E-10 0.0
/home/xiaowen/c_project/proteomics_cpp/testcases/data/st_no_digestion.msalign 35 408 550 75 8 4507.49498846875 4507.49498846875 6598 gi|16766708|ref|NP_462323.1| 50S ribosomal subunit protein X [Salmonella typhimurium LT2] 4532.514040189209 1 38 .MKVRASVK(KLC)[-25.02]RNCKIVKRDGVIRVICSAEPKHKQRQG. 1 19.0 15.0 2.137315384288365E-8 5.29576238800802E-10 0.0
/home/xiaowen/c_project/proteomics_cpp/testcases/data/st_no_digestion.msalign 120 505 679 30 4 2870.3652785156246 2870.3501951269573 6348 gi|16766584|ref|NP_462199.1| protein chain initiation factor IF-2 [Salmonella typhimurium LT2] 97513.55948086304 106 129 A.EEQAQREAEEQARREAEEQAKREA.Q 0 13.0 13.0 2.4249726147771933E-13 5.358893360411791E-10 0.0
/home/xiaowen/c_project/proteomics_cpp/testcases/data/st_no_digestion.msalign 708 1123 1503 60 8 6509.65576909375 6509.614042478027 6604 gi|16766711|ref|NP_462326.1| 50S ribosomal subunit protein L30 [Salmonella typhimurium LT2] 6509.614042478027 1 59 .MAKTIKITQTRSAIGRLPKHKATLLGLGLRRIGHTVEREDTPAVRGMVNAVSFMVKVEE. 0 17.0 14.0 2.6857030499954836E-10 5.371406099990967E-10 0.0
/home/xiaowen/c_project/proteomics_cpp/testcases/data/st_no_digestion.msalign 150 537 722 59 11 6311.406461625 6311.390989499511 2302 gi|16764546|ref|NP_460161.1| 50S ribosomal subunit protein L32 [Salmonella typhimurium LT2] 6442.431486325683 2 57 M.AVQQNKPTRSKRGMRRSHDALTAVTSLSVDKTSGEKHLRHHITADGYYRGRKVIAK. 0 13.0 12.0 5.643895812117507E-10 5.643895812117507E-10 0.0
/home/xiaowen/c_project/proteomics_cpp/testcases/data/st_no_digestion.msalign 399 805 1079 130 10 7825.921386460939 7825.921386460939 7898 gi|16767362|ref|NP_462977.1| 50S ribosomal subunit protein L31 [Salmonella typhimurium LT2] 7941.9762403540035 1 70 .MKKGIHPNYVEITA(TCSCGNVIKTHSTVGHDLNLDVCGKCH)[-116.05]PFFTGKQRVVDTGGRVERFNKRFSIPGSK. 1 35.0 24.0 2.6504705393076843E-9 5.679085485280725E-10 0.0
/home/xiaowen/c_project/proteomics_cpp/testcases/data/st_no_digestion.msalign 70 443 596 105 7 6310.404376660156 6310.404376660156 2302 gi|16764546|ref|NP_460161.1| 50S ribosomal subunit protein L32 [Salmonella typhimurium LT2] 6442.431486325683 2 57 M.AVQQNKPTRSKRGMRRSHDALTA(VT)[-.99]SLSVDKTSGEKHLRHHITADGYYRGRKVIAK. 1 23.0 16.0 9.436160450849536E-9 6.35474351160435E-10 0.0
/home/xiaowen/c_project/proteomics_cpp/testcases/data/st_no_digestion.msalign 555 962 1288 98 9 6394.593670082031 6394.578670082032 6604 gi|16766711|ref|NP_462326.1| 50S ribosomal subunit protein L30 [Salmonella typhimurium LT2] 6509.614042478027 2 59 M.AKTIKITQTRSAIGRLPKHKATLLGLGLRRIGHTVEREDTPAVRGMVNAVSF(M)[16.01]VKVEE. 1 29.0 21.0 2.57426383286362E-9 6.476876066216793E-10 0.0
/home/xiaowen/c_project/proteomics_cpp/testcases/data/st_no_digestion.msalign 1133 1606 2147 59 13 8741.649566972657 8741.60516949219 3630 gi|16765218|ref|NP_460833.1| DNA polymerase III theta subunit [Salmonella typhimurium LT2] 8741.605169492188 1 76 .MKTNLAQLEQAEMDKVNVDLAAAGVAFKERYNMPVVAEAVEREQPEHLRAWFRERLIAHRLASVSLSRLPYEPKVK. 0 18.0 15.0 3.265216291920887E-10 6.530432583841774E-10 0.0
/home/xiaowen/c_project/proteomics_cpp/testcases/data/st_no_digestion.msalign 659 1073 1436 126 16 8970.9264640625 8970.880617337647 7206 gi|16767013|ref|NP_462628.1| 50S ribosomal subunit protein L28 [Salmonella typhimurium LT2] 9101.921114163819 2 78 M.SRVCQVTGKRPVTGNNRSHALNATKRRFLPNLHSHRFWVESEKRFVTLRVSAKGMRIIDKKGIETVLSELRARGEKY. 0 21.0 17.0 6.833348579281726E-10 6.833348579281726E-10 0.0
/home/xiaowen/c_project/proteomics_cpp/testcases/data/st_no_digestion.msalign 1911 2783 3716 22 10 12202.547870875002 12202.440977292483 7986 gi|16767406|ref|NP_463021.1| 50S ribosomal subunit protein L7/L12 [Salmonella typhimurium LT2] 12291.470907407227 2 121 M.(S)[42.01]ITKDQIIEAVSAMSVMDVVELISAMEEKFGVSAAAAVAVAAGPAEAAEEKTEFDVILKAAGANKVAVIKAVRGATGLGLKEAKDLVESAPAALKEGVSKDDAEALKKSLEEAGAEVEVK. 0 12.0 10.0 6.914805150581446E-10 6.914805150581446E-10 0.0
/home/xiaowen/c_project/proteomics_cpp/testcases/data/st_no_digestion.msalign 1195 1675 2239 56 10 7272.032057304688 7271.982057304688 6624 gi|16766721|ref|NP_462336.1| 50S ribosomal subunit protein L29 [Salmonella typhimurium LT2] 7255.987646298828 1 63 .MKAKELREKSVEELNTELLNLLREQ(FNLRMQA)[15.99]ASGQLQQSHLLKQVRRDVARVKTLLTEKAGA. 1 18.0 17.0 1.831374981967462E-9 7.36623486722779E-10 0.0
/home/xiaowen/c_project/proteomics_cpp/testcases/data/st_no_digestion.msalign 541 948 1270 106 11 6394.606034585937 6394.576034585937 6604 gi|16766711|ref|NP_462326.1| 50S ribosomal subunit protein L30 [Salmonella typhimurium LT2] 6509.614042478027 2 59 M.AKTIKITQTRSAIGRLPKHKATLLGLGLRRIGHTVEREDTPAVRGMVNAVSF(M)[16.00]VKVEE. 1 34.0 19.0 3.014451453890875E-9 7.633279464272473E-10 0.0
/home/xiaowen/c_project/proteomics_cpp/testcases/data/st_no_digestion.msalign 673 1088 1456 61 10 8970.912991156254 8970.880617337647 7206 gi|16767013|ref|NP_462628.1| 50S ribosomal subunit protein L28 [Salmonella typhimurium LT2] 9101.921114163819 2 78 M.SRVCQVTGKRPVTGNNRSHALNATKRRFLPNLHSHRFWVESEKRFVTLRVSAKGMRIIDKKGIETVLSELRARGEKY. 0 12.0 12.0 7.855899818466331E-10 7.855899818466331E-10 0.0
/home/xiaowen/c_project/proteomics_cpp/testcases/data/st_no_digestion.msalign 723 1138 1523 91 5 6378.580727859375 6378.573545651855 6604 gi|16766711|ref|NP_462326.1| 50S ribosomal subunit protein L30 [Salmonella typhimurium LT2] 6509.614042478027 2 59 M.AKTIKITQTRSAIGRLPKHKATLLGLGLRRIGHTVEREDTPAVRGMVNAVSFMVKVEE. 0 16.0 14.0 8.399809643982555E-10 8.399809643982555E-10 0.0
/home/xiaowen/c_project/proteomics_cpp/testcases/data/st_no_digestion.msalign 680 1095 1466 101 7 6378.613783281251 6378.573545651854 6604 gi|16766711|ref|NP_462326.1| 50S ribosomal subunit protein L30 [Salmonella typhimurium LT2] 6509.614042478027 2 59 M.AKTIKITQTRSAIGRLPKHKATLLGLGLRRIGHTVEREDTPAVRGMVNAVSFMVKVEE. 0 21.0 17.0 9.927360661425484E-10 9.927360661425484E-10 0.0
/home/xiaowen/c_project/proteomics_cpp/testcases/data/st_no_digestion.msalign 1704 2349 3138 60 14 11232.854329023437 11232.765684323733 6542 gi|16766680|ref|NP_462295.1| factor-for-inversion stimulation protein [Salmonella typhimurium LT2] 11232.765684323731 1 98 .MFEQRVNSDVLTVSTVNSQDQVTQKPLRDSVKQALKNYFAQLNGQDVNDLYELVLAEVEQPLLDMVMQYTRGNQTRAALMMGINRGTLRKKLKKYGMN. 0 16.0 13.0 5.148585863045751E-10 1.0297171726091502E-9 0.0
/home/xiaowen/c_project/proteomics_cpp/testcases/data/st_no_digestion.msalign 591 999 1338 166 12 9966.883804265628 9966.838422971192 2906 gi|16764848|ref|NP_460463.1| putative periplasmic protein [Salmonella typhimurium LT2] 13009.40887661499 29 113 A.ETSKLVIESGDSAQSRQEAAMEKEQWNDTRSLRQKVNTRAEKEWDKADAAFDNRDKCEQSANINAYWEPNTLRCLDRRTGRVITP. 0 27.0 23.0 5.819999624175797E-11 1.0475999323516435E-9 0.0
/home/xiaowen/c_project/proteomics_cpp/testcases/data/st_no_digestion.msalign 1712 2359 3151 82 9 11232.84883890625 11232.765684323731 6542 gi|16766680|ref|NP_462295.1| factor-for-inversion stimulation protein [Salmonella typhimurium LT2] 11232.765684323731 1 98 .MFEQRVNSDVLTVSTVNSQDQVTQKPLRDSVKQALKNYFAQLNGQDVNDLYELVLAEVEQPLLDMVMQYTRGNQTRAALMMGINRGTLRKKLKKYGMN. 0 16.0 16.0 5.326943412784075E-10 1.065388682556815E-9 0.0
/home/xiaowen/c_project/proteomics_cpp/testcases/data/st_no_digestion.msalign 726 1141 1527 71 13 9519.32697324219 9519.32697324219 86 gi|16763433|ref|NP_459048.1| 30S ribosomal subunit protein S20 [Salmonella typhimurium LT2] 9649.330160336915 2 87 M.ANIKSAKKRAVQSEKARKHNASRRSMMRTFIKKVYAAIEAGD(KAAA)[1.04]LKAFNEMQPIVDRQAAKGLIHKNKAARHKANLTAQINKLA. 1 17.0 16.0 7.309146261134732E-9 1.0672577748704356E-9 0.0
/home/xiaowen/c_project/proteomics_cpp/testcases/data/st_no_digestion.msalign 1723 2380 3179 23 13 11782.23072171875 11782.113416867676 7558 gi|16767191|ref|NP_462806.1| thioredoxin 1 [Salmonella typhimurium LT2] 11913.153913693848 2 109 M.SDKIIHLTDDSFDTDVLKADGAILVDFWAEWCGPCKMIAPILDEIADEYQGKLTVAKLNIDQNPGTAPKYGIRGIPTLLLFKNGEVAATKVGALSKGQLKEFLDANLA. 0 13.0 11.0 1.1075916105168984E-9 1.1075916105168984E-9 0.0
/home/xiaowen/c_project/proteomics_cpp/testcases/data/st_no_digestion.msalign 153 540 726 56 5 3467.688585433594 3467.673635678715 6348 gi|16766584|ref|NP_462199.1| protein chain initiation factor IF-2 [Salmonella typhimurium LT2] 97513.55948086304 104 133 L.AAEEQAQREAEEQARREAEEQAKREAQQKA.E 0 16.0 15.0 4.308138484338138E-13 1.1139546958909411E-9 0.0
/home/xiaowen/c_project/proteomics_cpp/testcases/data/st_no_digestion.msalign 1533 2124 2838 63 12 9250.102718859378 9250.042718859379 870 gi|16763832|ref|NP_459447.1| DNA-binding protein HU-beta [Salmonella typhimurium LT2] 9234.010030942383 1 90 .M(NKSQLIEKIAAGADISKAAAGRALD)[16.03]AIIASVTESLKEGDDVALVGFGTFAVKERAARTGRNPQTGKEITIAAAKVPSFRAGKALKDAVN. 1 22.0 19.0 3.0656540559064444E-9 1.1488931234184492E-9 0.0
/home/xiaowen/c_project/proteomics_cpp/testcases/data/st_no_digestion.msalign 346 746 1000 64 10 9627.75647549219 9627.75647549219 738 gi|16763764|ref|NP_459379.1| phosphate starvation-inducible protein [Salmonella typhimurium LT2] 11830.048254208985 22 106 A.TEKPLTPQQQRMTTCNQQATAQALKGDARKTYLSDCLK(NSQSA)[-.97]PGEKSLTPQQQKMRECNVQATEQSLKGDDRSKFMSACLKKAA. 1 22.0 19.0 5.16422131333747E-11 1.1806293687043165E-9 0.0
/home/xiaowen/c_project/proteomics_cpp/testcases/data/st_no_digestion.msalign 350 751 1007 119 16 8420.743956875 8420.707170682374 6198 gi|16766509|ref|NP_462124.1| 30S ribosomal subunit protein S21 [Salmonella typhimurium LT2] 8551.747667508545 2 71 M.PVIKVRENEPFDVALRRFKRSCEKAGVLAEVRRREFYEKPTTERKRAKASAVKRHAKKLARENARRTRLY. 0 19.0 14.0 1.1905460711046154E-9 1.1905460711046154E-9 0.0
/home/xiaowen/c_project/proteomics_cpp/testcases/data/st_no_digestion.msalign 1243 1732 2315 62 8 6478.508300156249 6478.460607724609 3498 gi|16765150|ref|NP_460765.1| putative cytoplasmic protein [Salmonella typhimurium LT2] 6478.460607724609 1 57 .MNSEELTHKAEEEIAALISKKVAELRKKTGQEVSEIEFAPRETMKGLEGYHVKIKLL. 0 15.0 14.0 6.362580715006351E-10 1.2725161430012702E-9 0.0
/home/xiaowen/c_project/proteomics_cpp/testcases/data/st_no_digestion.msalign 1875 2683 3583 24 14 12291.577601765624 12291.470907407227 7986 gi|16767406|ref|NP_463021.1| 50S ribosomal subunit protein L7/L12 [Salmonella typhimurium LT2] 12291.470907407227 1 121 .MSITKDQIIEAVSAMSVMDVVELISAMEEKFGVSAAAAVAVAAGPAEAAEEKTEFDVILKAAGANKVAVIKAVRGATGLGLKEAKDLVESAPAALKEGVSKDDAEALKKSLEEAGAEVEVK. 0 20.0 12.0 6.442633927429692E-10 1.2885267854859384E-9 0.0
/home/xiaowen/c_project/proteomics_cpp/testcases/data/st_no_digestion.msalign 1062 1503 2010 184 9 11759.47395804687 11759.412664609375 6642 gi|16766730|ref|NP_462345.1| 30S ribosomal subunit protein S10 [Salmonella typhimurium LT2] 11759.412664609375 1 103 .MQNQRIRIRLKAFDHRLIDQSTAEIVETAKRTGAQVRGPIPLPTRKERFTVLISPHVNKDARDQYEIRTHKRLVDIVEPTEKTVDALMRLDLAAGVDVQISLG. 0 34.0 24.0 7.04528653283998E-10 1.409057306567996E-9 0.0
/home/xiaowen/c_project/proteomics_cpp/testcases/data/st_no_digestion.msalign 335 735 986 157 12 9627.737406890625 9627.737406890625 738 gi|16763764|ref|NP_459379.1| phosphate starvation-inducible protein [Salmonella typhimurium LT2] 11830.048254208985 2 106 M.KITLLV(TLLFGLVFLTAVGATEKPLT)[-2071.27]PQQQRMTTCNQQATAQALKGDARKTYLSDCLKNSQSAPGEKSLTPQQQKMRECNVQATEQSLKGDDRSKFMSACLKKAA. 1 37.0 24.0 2.591468559942121E-10 1.4832867852653966E-9 0.0
/home/xiaowen/c_project/proteomics_cpp/testcases/data/st_no_digestion.msalign 1514 2103 2810 147 15 10849.759340062501 10849.759340062501 6412 gi|16766616|ref|NP_462231.1| putative sigma N modulation factor [Salmonella typhimurium LT2] 10850.697179990235 1 95 .(MQ)[42.01](LNITGHNVEITE)[635.36]ALREFVTTKFAKLEQYFERINQVYVVLKVEKVT(HISDATLHV)[-678.31]NGGEIHASAEGQDMYAAIDGLIDKLARQLTRHKDKLKQH. 2 38.0 26.0 5.794961566786424E-11 1.5214700016663722E-9 0.0
/home/xiaowen/c_project/proteomics_cpp/testcases/data/st_no_digestion.msalign 592 1000 1339 166 12 9966.883804265628 9966.838422971192 2906 gi|16764848|ref|NP_460463.1| putative periplasmic protein [Salmonella typhimurium LT2] 13009.40887661499 29 113 A.ETSKLVIESGDSAQSRQEAAMEKEQWNDTRSLRQKVNTRAEKEWDKADAAFDNRDKCEQSANINAYWEPNTLRCLDRRTGRVITP. 0 27.0 22.0 8.898597911688556E-11 1.60174762410394E-9 0.0
/home/xiaowen/c_project/proteomics_cpp/testcases/data/st_no_digestion.msalign 1959 3091 4127 53 11 8112.336685289062 8112.336685289062 1836 gi|16764314|ref|NP_459929.1| protein chain initiation factor IF-1 [Salmonella typhimurium LT2] 8244.32235546631 2 72 M.AKEDNIEMQGTVLETL(P)[-.95]NTMFRVELENGHVVTAHISGKMRKNYIRILTGDKVTVELTPYDLSKGRIVFRSR. 1 17.0 15.0 1.1204466807619818E-8 1.6352639759606657E-9 0.0
/home/xiaowen/c_project/proteomics_cpp/testcases/data/st_no_digestion.msalign 1408 1950 2606 30 8 9113.786409875 9113.737188535157 4692 gi|16765751|ref|NP_461366.1| phosphohistidinoprotein-hexose phosphotransferase [Salmonella typhimurium LT2] 9113.737188535157 1 85 .MFQQEVTITAPNGLHTRPAAQFVKEAKGFTSEITVTSNGKSASAKSLFKLQTLGLTQGTVVTISAEGEDEQKAVEHLVKLMAELE. 0 11.0 11.0 8.539595922420431E-10 1.7079191844840862E-9 0.0
/home/xiaowen/c_project/proteomics_cpp/testcases/data/st_no_digestion.msalign 1392 1931 2580 176 15 15458.081312117187 15457.916312117188 3388 gi|16765095|ref|NP_460710.1| DNA-binding protein HLP-II [Salmonella typhimurium LT2] 15590.001573758545 2 137 M.SEALKILNNIRTLRAQARECTLETLEEMLEKLEVVVNERREEESAAAAEVEERTRKLQQYREMLIADGI(D)[-1.04]PNELLNSMAAAKSGTKAKRAARPAKYSYVDENGETKTWTGQGRTPAVIKKAMEEQGKQLEDFLIKE. 1 36.0 30.0 8.216579538507387E-9 1.7382750268133031E-9 0.0
/home/xiaowen/c_project/proteomics_cpp/testcases/data/st_no_digestion.msalign 788 1205 1612 77 9 6537.647740671875 6537.637740671875 6604 gi|16766711|ref|NP_462326.1| 50S ribosomal subunit protein L30 [Salmonella typhimurium LT2] 6509.614042478027 1 59 .(MAKTIK)[28.02]ITQTRSAIGRLPKHKATLLGLGLRRIGHTVEREDTPAVRGMVNAVSFMVKVEE. 1 29.0 18.0 3.0295134398191324E-8 1.8177080638914794E-9 0.0
/home/xiaowen/c_project/proteomics_cpp/testcases/data/st_no_digestion.msalign 999 1429 1911 39 10 8113.3393226171875 8113.281858640137 1836 gi|16764314|ref|NP_459929.1| protein chain initiation factor IF-1 [Salmonella typhimurium LT2] 8244.32235546631 2 72 M.AKEDNIEMQGTVLETLPNTMFRVELENGHVVTAHISGKMRKNYIRILTGDKVTVELTPYDLSKGRIVFRSR. 0 14.0 12.0 9.211142294924901E-10 1.8422284589849802E-9 0.0
/home/xiaowen/c_project/proteomics_cpp/testcases/data/st_no_digestion.msalign 144 531 714 30 5 4411.16398623047 4411.145437436524 3864 gi|16765337|ref|NP_460952.1| putative endoprotease [Salmonella typhimurium LT2] 16651.30049343628 2 45 M.ALTDTAGGTQTDPGTGKPSENPPAAPNKPTPPKEETPPGAPEKY.A 0 14.0 11.0 2.827944535341047E-11 1.8947228386785013E-9 0.0
/home/xiaowen/c_project/proteomics_cpp/testcases/data/st_no_digestion.msalign 689 1104 1478 101 6 6378.604213578125 6378.573545651856 6604 gi|16766711|ref|NP_462326.1| 50S ribosomal subunit protein L30 [Salmonella typhimurium LT2] 6509.614042478027 2 59 M.AKTIKITQTRSAIGRLPKHKATLLGLGLRRIGHTVEREDTPAVRGMVNAVSFMVKVEE. 0 22.0 14.0 1.9172155905877045E-9 1.9172155905877045E-9 0.0
/home/xiaowen/c_project/proteomics_cpp/testcases/data/st_no_digestion.msalign 1518 2107 2815 136 15 10850.768251195313 10850.658251195313 6412 gi|16766616|ref|NP_462231.1| putative sigma N modulation factor [Salmonella typhimurium LT2] 10850.697179990235 1 95 .(MQLNITGHNVEITEALREF)[42.01]VTTKFAKLEQYF(ERINQVYVVLKVEK)[-42.05]VTHISDATLHVNGGEIHASAEGQDMYAAIDGLIDKLARQLTRHKDKLKQH. 1 34.0 20.0 7.564071559745036E-9 1.957868176983985E-9 0.0
/home/xiaowen/c_project/proteomics_cpp/testcases/data/st_no_digestion.msalign 154 541 727 57 5 3467.688585433594 3467.673635678715 6348 gi|16766584|ref|NP_462199.1| protein chain initiation factor IF-2 [Salmonella typhimurium LT2] 97513.55948086304 104 133 L.AAEEQAQREAEEQARREAEEQAKREAQQKA.E 0 15.0 15.0 7.659347076769551E-13 1.980476178898134E-9 0.0
/home/xiaowen/c_project/proteomics_cpp/testcases/data/st_no_digestion.msalign 1327 1828 2443 74 10 9514.221603976566 9514.221603976566 8022 gi|16767424|ref|NP_463039.1| DNA-binding protein HU-alpha [Salmonella typhimurium LT2] 9515.17277355713 1 90 .MNKTQLIDVIADKAELSKTQAKAALEST(L)[-.95]AAITESLKEGDAVQLVGFGTFKVNHRAERTGRNPQTGKEIKIAAANVPAFVSGKALKDAVK. 1 18.0 17.0 1.4473508256482653E-8 2.0282944096454926E-9 0.0
/home/xiaowen/c_project/proteomics_cpp/testcases/data/st_no_digestion.msalign 302 702 942 140 17 8420.725725064454 8420.707170682374 6198 gi|16766509|ref|NP_462124.1| 30S ribosomal subunit protein S21 [Salmonella typhimurium LT2] 8551.747667508545 2 71 M.PVIKVRENEPFDVALRRFKRSCEKAGVLAEVRRREFYEKPTTERKRAKASAVKRHAKKLARENARRTRLY. 0 25.0 16.0 2.045867136415238E-9 2.045867136415238E-9 0.0
/home/xiaowen/c_project/proteomics_cpp/testcases/data/st_no_digestion.msalign 1705 2350 3139 55 14 11232.854329023437 11232.765684323733 6542 gi|16766680|ref|NP_462295.1| factor-for-inversion stimulation protein [Salmonella typhimurium LT2] 11232.765684323731 1 98 .MFEQRVNSDVLTVSTVNSQDQVTQKPLRDSVKQALKNYFAQLNGQDVNDLYELVLAEVEQPLLDMVMQYTRGNQTRAALMMGINRGTLRKKLKKYGMN. 0 19.0 12.0 1.1035170333707584E-9 2.207034066741517E-9 0.0
/home/xiaowen/c_project/proteomics_cpp/testcases/data/st_no_digestion.msalign 1942 2886 3854 106 11 8966.760024238285 8966.695024238285 7662 gi|16767243|ref|NP_462858.1| Sec-independent protein secretion pathway component [Salmonella typhimurium LT2] 8938.698942380372 1 84 .(MGG)[28.00]ISIWQLLIVAVIVVLLFGTKKLGSIGSDLGASIKGFKKAMSDDDAKQDKTSQDADFTAKSIADKQGEAKKEDAKSQDKEQV. 1 28.0 21.0 1.6181082007724842E-8 2.2294456718402613E-9 0.0
/home/xiaowen/c_project/proteomics_cpp/testcases/data/st_no_digestion.msalign 935 1358 1816 37 13 9169.751283613283 9169.690111356202 7154 gi|16766987|ref|NP_462602.1| glutaredoxin 3 [Salmonella typhimurium LT2] 9300.730608182374 2 83 M.ANIEIYTKATCPFCHRAKALLNSKGVSFQEIAIDGDAVKREEMIKRSGRTTVPQIFIDAQHIGGCDDLYALDARGGLDPLLR. 0 11.0 11.0 2.3766541694491567E-9 2.3766541694491567E-9 0.0
/home/xiaowen/c_project/proteomics_cpp/testcases/data/st_no_digestion.msalign 116 501 674 105 11 6311.419889359375 6311.390989499511 2302 gi|16764546|ref|NP_460161.1| 50S ribosomal subunit protein L32 [Salmonella typhimurium LT2] 6442.431486325683 2 57 M.AVQQNKPTRSKRGMRRSHDALTAVTSLSVDKTSGEKHLRHHITADGYYRGRKVIAK. 0 18.0 14.0 2.547328485058258E-9 2.547328485058258E-9 0.0
/home/xiaowen/c_project/proteomics_cpp/testcases/data/st_no_digestion.msalign 945 1368 1830 74 8 7264.6805204375 7264.61311932129 6494 gi|16766657|ref|NP_462272.1| putative periplasmic protein [Salmonella typhimurium LT2] 9528.873335080567 23 88 A.AVHQVNAEQAQNLQPMGTISVSQIGSTPMDMRQEIVAKAEKAGANSYRIIELKEGDNWHATAELYK. 0 27.0 18.0 7.32751261449065E-11 2.5646294150717278E-9 0.0
/home/xiaowen/c_project/proteomics_cpp/testcases/data/st_no_digestion.msalign 1965 3109 4151 125 9 11759.475056679683 11759.412664609375 6642 gi|16766730|ref|NP_462345.1| 30S ribosomal subunit protein S10 [Salmonella typhimurium LT2] 11759.412664609375 1 103 .MQNQRIRIRLKAFDHRLIDQSTAEIVETAKRTGAQVRGPIPLPTRKERFTVLISPHVNKDARDQYEIRTHKRLVDIVEPTEKTVDALMRLDLAAGVDVQISLG. 0 27.0 20.0 1.3144348764007829E-9 2.6288697528015658E-9 0.0
/home/xiaowen/c_project/proteomics_cpp/testcases/data/st_no_digestion.msalign 1685 2317 3095 53 17 17715.58762402344 17715.418695645752 7984 gi|16767405|ref|NP_463020.1| 50S ribosomal subunit protein L10 [Salmonella typhimurium LT2] 17846.459192471924 2 165 M.ALNLQDKQAIVAEVSEVAKGALSAVVADSRGVTVDKMTELRKAGREAGVYMRVVRNTLLRRVVEGTQFECLKDTFVGPTLIAYSMEHPGAAARLFKEFAKANAKFEVKAAAFEGELIPASQIDRLATLPTYEEAIARLMATMKEASAGKLVRTLAAVRDAKEAA. 0 16.0 13.0 2.6984007760232385E-9 2.6984007760232385E-9 0.0
/home/xiaowen/c_project/proteomics_cpp/testcases/data/st_no_digestion.msalign 159 546 734 88 10 6266.611385460939 6266.601385460939 7204 gi|16767012|ref|NP_462627.1| 50S ribosomal subunit protein L33 [Salmonella typhimurium LT2] 6367.619703488769 2 55 M.(AKGIREKIKL)[30.02]VSSAGTGHFYTTTKNKRTKPEKLELKKFDPVVRQHVIYKEAKIK. 1 17.0 15.0 4.24707558459168E-8 2.7811681863629007E-9 0.0
/home/xiaowen/c_project/proteomics_cpp/testcases/data/st_no_digestion.msalign 51 424 571 73 6 4416.47244509375 4416.47244509375 6598 gi|16766708|ref|NP_462323.1| 50S ribosomal subunit protein X [Salmonella typhimurium LT2] 4532.514040189209 1 38 .MKVRASVKKL(CRNCKIVK)[-116.04]RDGVIRVICSAEPKHKQRQG. 1 19.0 16.0 5.706545049444769E-8 2.8324158139294783E-9 0.0
/home/xiaowen/c_project/proteomics_cpp/testcases/data/st_no_digestion.msalign 1058 1497 2002 178 14 11759.486284101564 11759.412664609375 6642 gi|16766730|ref|NP_462345.1| 30S ribosomal subunit protein S10 [Salmonella typhimurium LT2] 11759.412664609375 1 103 .MQNQRIRIRLKAFDHRLIDQSTAEIVETAKRTGAQVRGPIPLPTRKERFTVLISPHVNKDARDQYEIRTHKRLVDIVEPTEKTVDALMRLDLAAGVDVQISLG. 0 37.0 24.0 7.780456257251325E-10 3.11218250290053E-9 0.0
/home/xiaowen/c_project/proteomics_cpp/testcases/data/st_no_digestion.msalign 398 804 1078 77 11 7825.920519152345 7825.920519152345 7898 gi|16767362|ref|NP_462977.1| 50S ribosomal subunit protein L31 [Salmonella typhimurium LT2] 7941.9762403540035 1 70 .MKKGIHPNYVEITATCSCGNVIKTHSTVGHDLNLDVCGKC(H)[-116.06]PFFTGKQRVVDTGGRVERFNKRFSIPGSK. 1 21.0 18.0 1.6739715462076422E-8 3.5332358572219787E-9 0.0
/home/xiaowen/c_project/proteomics_cpp/testcases/data/st_no_digestion.msalign 733 1149 1538 149 17 9518.337297953129 9518.307297953128 86 gi|16763433|ref|NP_459048.1| 30S ribosomal subunit protein S20 [Salmonella typhimurium LT2] 9649.330160336915 2 87 M.(ANIKS)[42.01]AKKRAVQ(SEKARKHNASRRS)[-41.99]MMRTFIKKVYAAIEAGDKAAALKAFNEMQPIVDRQAAKGLIHKNKAARHKANLTAQINKLA. 1 27.0 20.0 2.5614675443873534E-8 3.534133976226844E-9 0.0
/home/xiaowen/c_project/proteomics_cpp/testcases/data/st_no_digestion.msalign 125 510 686 52 7 4078.237799207032 4078.2187406591793 2302 gi|16764546|ref|NP_460161.1| 50S ribosomal subunit protein L32 [Salmonella typhimurium LT2] 6442.431486325683 21 57 D.ALTAVTSLSVDKTSGEKHLRHHITADGYYRGRKVIAK. 0 15.0 11.0 2.4440142793370646E-10 3.666021419005597E-9 0.0
/home/xiaowen/c_project/proteomics_cpp/testcases/data/st_no_digestion.msalign 295 695 932 140 13 8420.730384484375 8420.707170682374 6198 gi|16766509|ref|NP_462124.1| 30S ribosomal subunit protein S21 [Salmonella typhimurium LT2] 8551.747667508545 2 71 M.PVIKVRENEPFDVALRRFKRSCEKAGVLAEVRRREFYEKPTTERKRAKASAVKRHAKKLARENARRTRLY. 0 20.0 16.0 3.7256720501312515E-9 3.7256720501312515E-9 0.0
/home/xiaowen/c_project/proteomics_cpp/testcases/data/st_no_digestion.msalign 1659 2286 3054 196 14 12106.104969515625 12105.95568295044 938 gi|16763865|ref|NP_459480.1| putative cytoplasmic protein [Salmonella typhimurium LT2] 12063.945116239014 1 109 .(M)[42.01]FGKGGLGNLMKQAQQMQEKMQKMQEEIAQLEVTGESGAGLVKVTINGAHNCRRVEIDPSLLEDDKEMLEDLVAAAFNDAARRIEETQKEKMASVSSGMQLPPGFKMPF. 0 30.0 23.0 1.8701344168267167E-9 3.740268833653433E-9 0.0
/home/xiaowen/c_project/proteomics_cpp/testcases/data/st_no_digestion.msalign 1177 1657 2215 132 17 12218.833067480471 12218.769315915528 6630 gi|16766724|ref|NP_462339.1| 50S ribosomal subunit protein L22 [Salmonella typhimurium LT2] 12218.769315915528 1 110 .METIAKHRHARSSAQKVRLVADLIRGKKVSQALDILTYTNKKAAVLVKKVLESAIANAEHNDGADIDDLKVTKIFVDEGPSMKRIMPRAKGRADRILKRTSHITVVVSDR. 0 16.0 15.0 1.945820929751288E-9 3.891641859502576E-9 0.0
/home/xiaowen/c_project/proteomics_cpp/testcases/data/st_no_digestion.msalign 1725 2382 3182 45 14 11782.23711759375 11782.113416867676 7558 gi|16767191|ref|NP_462806.1| thioredoxin 1 [Salmonella typhimurium LT2] 11913.153913693848 2 109 M.SDKIIHLTDDSFDTDVLKADGAILVDFWAEWCGPCKMIAPILDEIADEYQGKLTVAKLNIDQNPGTAPKYGIRGIPTLLLFKNGEVAATKVGALSKGQLKEFLDANLA. 0 14.0 10.0 4.214104329800111E-9 4.214104329800111E-9 0.0
/home/xiaowen/c_project/proteomics_cpp/testcases/data/st_no_digestion.msalign 924 1347 1802 56 10 9169.75754764844 9169.75754764844 6342 gi|16766581|ref|NP_462196.1| 30S ribosomal subunit protein S15 [Salmonella typhimurium LT2] 10191.46906109375 11 89 K.(IV)[-2.22]SEFGRDANDTGSTDVQVALLTAQINHLQGHFAEHKKDHHSRRGLLRMVSQRRKLLDYLKRKDVARYTALIERLGLRR. 1 19.0 15.0 1.9175180688396034E-10 4.24079187571657E-9 0.0
/home/xiaowen/c_project/proteomics_cpp/testcases/data/st_no_digestion.msalign 772 1189 1591 196 13 12995.482292179688 12995.41010494751 7524 gi|16767174|ref|NP_462789.1| putative transcriptional regulator [Salmonella typhimurium LT2] 13126.450601773682 2 112 M.AESFTTTNRYFDNKHYPRGFSRHGDFTIKEAQLLERHGHAFNDLDLGKREPVTEEEKLFVAVCRGEREPVTDAERVWSKYMTRIKRPKRFHTLSGGKPQVEGAEDYTEADD. 0 30.0 23.0 4.377271446358698E-9 4.377271446358698E-9 0.0
/home/xiaowen/c_project/proteomics_cpp/testcases/data/st_no_digestion.msalign 1372 1904 2544 67 16 17503.396363625 17503.297346311036 6606 gi|16766712|ref|NP_462327.1| 30S ribosomal subunit protein S5 [Salmonella typhimurium LT2] 17592.32727642578 2 167 M.(A)[42.01]HIEKQAGELQEKLIAVNRVSKTVKGGRIFSFTALTVVGDGNGRVGFGYGKAREVPAAIQKAMEKARRNMINVALNNGTLQHPVKGVHTGSRVFMQPASEGTGIIAGGAMRAVLEVAGVHNVLAKAYGSTNPINVVRATIDGLENMNSPEMVAAKRGKSVEEILGK. 0 14.0 14.0 4.4241398381457395E-9 4.4241398381457395E-9 0.0
/home/xiaowen/c_project/proteomics_cpp/testcases/data/st_no_digestion.msalign 621 1030 1379 187 15 11527.35570405078 11527.31070405078 6614 gi|39546367|ref|NP_462331.2| 30S ribosomal subunit protein S14 [Salmonella typhimurium LT2] 11113.053682523194 2 96 M.KA(REVKRVALAD)[545.30]KYFAKRAELKAIISDVNATDEDRWNAVLKLQTLPRDSSPSRQRNRCRQTGRPHAFLRKFGLSRIKVREAAMRGEIPGLKKASW. 1 36.0 25.0 2.4017365499498337E-9 4.439811123925016E-9 0.0
/home/xiaowen/c_project/proteomics_cpp/testcases/data/st_no_digestion.msalign 597 1005 1346 166 13 9966.895815375 9966.838422971192 2906 gi|16764848|ref|NP_460463.1| putative periplasmic protein [Salmonella typhimurium LT2] 13009.40887661499 29 113 A.ETSKLVIESGDSAQSRQEAAMEKEQWNDTRSLRQKVNTRAEKEWDKADAAFDNRDKCEQSANINAYWEPNTLRCLDRRTGRVITP. 0 31.0 21.0 2.357482061220906E-10 4.479215916319722E-9 0.0
/home/xiaowen/c_project/proteomics_cpp/testcases/data/st_no_digestion.msalign 1218 1706 2280 63 16 10304.6105715 10304.534986691895 7548 gi|16767186|ref|NP_462801.1| peptidyl-prolyl cis-trans isomerase C [Salmonella typhimurium LT2] 10435.575483518067 2 93 M.AKMAAALHILVKEEKLALDLLEQIKNGGDFEKLAKKHSICPSGKKGGHLGEFRQGQMVPAFDKVVFSCPVLEPTGPLHTQFGYHIIKVLYRK. 0 18.0 12.0 4.570582071094483E-9 4.570582071094483E-9 0.0
/home/xiaowen/c_project/proteomics_cpp/testcases/data/st_no_digestion.msalign 1660 2287 3055 140 11 12106.086636382814 12105.95568295044 938 gi|16763865|ref|NP_459480.1| putative cytoplasmic protein [Salmonella typhimurium LT2] 12063.945116239014 1 109 .(M)[42.01]FGKGGLGNLMKQAQQMQEKMQKMQEEIAQLEVTGESGAGLVKVTINGAHNCRRVEIDPSLLEDDKEMLEDLVAAAFNDAARRIEETQKEKMASVSSGMQLPPGFKMPF. 0 26.0 21.0 2.446411007367701E-9 4.892822014735402E-9 0.0
/home/xiaowen/c_project/proteomics_cpp/testcases/data/st_no_digestion.msalign 1404 1945 2599 190 22 14956.465796851562 14956.465796851562 6602 gi|16766710|ref|NP_462325.1| 50S ribosomal subunit protein L15 [Salmonella typhimurium LT2] 14957.307417111817 1 144 .MRLNTLSPAEGSKKAGKRLGRGIGSGLGKTGG(RGHKGQKSRSGGGVRRGFEG)[-.84]GQMPLYRRLPKFGFTSRKAAITAEVRLSDLAKVEGGVVDLNTLKAANIIGIQIEFAKVILAGEVTTPVTVRGLRVTKGARAAIEAAGGKIEE. 1 23.0 23.0 1.8431341649678894E-8 4.899583328817492E-9 0.0
/home/xiaowen/c_project/proteomics_cpp/testcases/data/st_no_digestion.msalign 941 1364 1824 52 8 7264.66733684375 7264.61311932129 6494 gi|16766657|ref|NP_462272.1| putative periplasmic protein [Salmonella typhimurium LT2] 9528.873335080567 23 88 A.AVHQVNAEQAQNLQPMGTISVSQIGSTPMDMRQEIVAKAEKAGANSYRIIELKEGDNWHATAELYK. 0 16.0 16.0 1.487556189740644E-10 4.908935426144125E-9 0.0
/home/xiaowen/c_project/proteomics_cpp/testcases/data/st_no_digestion.msalign 1420 1962 2622 67 9 9113.8201495 9113.737188535157 4692 gi|16765751|ref|NP_461366.1| phosphohistidinoprotein-hexose phosphotransferase [Salmonella typhimurium LT2] 9113.737188535157 1 85 .MFQQEVTITAPNGLHTRPAAQFVKEAKGFTSEITVTSNGKSASAKSLFKLQTLGLTQGTVVTISAEGEDEQKAVEHLVKLMAELE. 0 14.0 14.0 2.463958742605247E-9 4.927917485210494E-9 0.0
/home/xiaowen/c_project/proteomics_cpp/testcases/data/st_no_digestion.msalign 1361 1892 2528 64 22 17503.454270125007 17503.297346311036 6606 gi|16766712|ref|NP_462327.1| 30S ribosomal subunit protein S5 [Salmonella typhimurium LT2] 17592.32727642578 2 167 M.(A)[42.01]HIEKQAGELQEKLIAVNRVSKTVKGGRIFSFTALTVVGDGNGRVGFGYGKAREVPAAIQKAMEKARRNMINVALNNGTLQHPVKGVHTGSRVFMQPASEGTGIIAGGAMRAVLEVAGVHNVLAKAYGSTNPINVVRATIDGLENMNSPEMVAAKRGKSVEEILGK. 0 14.0 13.0 5.016043030690089E-9 5.016043030690089E-9 0.0
/home/xiaowen/c_project/proteomics_cpp/testcases/data/st_no_digestion.msalign 259 657 882 47 5 2823.503823503906 2823.499983029786 354 gi|16763570|ref|NP_459185.1| aspartate 1-decarboxylase [Salmonella typhimurium LT2] 13992.038381772461 1 24 .MIRTMLQGKLHRVKVTQADLHYEG.S 0 18.0 17.0 6.115769445012957E-11 5.198404028261014E-9 0.0
/home/xiaowen/c_project/proteomics_cpp/testcases/data/st_no_digestion.msalign 1305 1804 2411 34 14 10614.6123661875 10614.512960629883 1892 gi|16764342|ref|NP_459957.1| integration host factor beta subunit [Salmonella typhimurium LT2] 10614.512960629883 1 94 .MTKSELIERLATQQSHIPAKAVEDAVKEMLEHMASTLAQGERIEIRGFGSFSLHYRAPRTGRNPKTGDKVELEGKYVPHFKPGKELRDRANIYG. 0 9.0 9.0 2.645640312393267E-9 5.291280624786534E-9 0.0
/home/xiaowen/c_project/proteomics_cpp/testcases/data/st_no_digestion.msalign 634 1043 1396 192 14 11527.337894601562 11527.312894601562 6614 gi|39546367|ref|NP_462331.2| 30S ribosomal subunit protein S14 [Salmonella typhimurium LT2] 11113.053682523194 2 96 M.KA(REVKRVALAD)[545.30]KYFAKRAELKAIISDVNATDEDRWNAVLKLQTLPRDSSPSRQRNRCRQTGRPHAFLRKFGLSRIKVREAAMRGEIPGLKKASW. 1 34.0 25.0 3.188879820230789E-9 5.894911371114533E-9 0.0
/home/xiaowen/c_project/proteomics_cpp/testcases/data/st_no_digestion.msalign 1277 1769 2364 65 13 14043.580420640625 14043.501604276124 6612 gi|16766715|ref|NP_462330.1| 30S ribosomal subunit protein S8 [Salmonella typhimurium LT2] 14174.542101102295 2 130 M.SMQDPIADMLTRIRNGQAANKAAVTMPSSKLKVAIANVLKEEGFIEDFKVEGDTKPELELTLKYFQGKAVVESIQRVSRPGLRIYKRKDELPKVMAGLGIAVVSTSKGVMTDRAARQAGLGGEIICYVA. 0 11.0 11.0 6.152612945769564E-9 6.152612945769564E-9 0.0
/home/xiaowen/c_project/proteomics_cpp/testcases/data/st_no_digestion.msalign 648 1058 1416 149 17 8970.932005445315 8970.880617337647 7206 gi|16767013|ref|NP_462628.1| 50S ribosomal subunit protein L28 [Salmonella typhimurium LT2] 9101.921114163819 2 78 M.SRVCQVTGKRPVTGNNRSHALNATKRRFLPNLHSHRFWVESEKRFVTLRVSAKGMRIIDKKGIETVLSELRARGEKY. 0 21.0 17.0 6.34083782711254E-9 6.34083782711254E-9 0.0
/home/xiaowen/c_project/proteomics_cpp/testcases/data/st_no_digestion.msalign 1427 1971 2634 109 13 16293.847628437503 16293.8076284375 1592 gi|16764195|ref|NP_459810.1| outer membrane protease precursor [Salmonella typhimurium LT2] 18539.917421536866 24 171 A.ATSTVTGGYAQSDAQGVANKMSGFNLKYRYEQDDNPLGVIGSFTYTEKDRTNGAGDYNKGQYYGITAGPAYRL(NDW)[-.88]ASIYGVVGVGYGKFQTTDYPTYKHDTSDYGFSYGAGLQFNPMENVALDFSYEQSRIRSVDVGTWIAGVGYRF. 1 24.0 22.0 1.969434935633417E-10 6.386590707532323E-9 0.0
/home/xiaowen/c_project/proteomics_cpp/testcases/data/st_no_digestion.msalign 1019 1451 1940 27 8 7283.63021946875 7283.620219468749 7050 gi|16766935|ref|NP_462550.1| major cold shock protein [Salmonella typhimurium LT2] 7398.628027158203 1 70 .MS(GKM)[-115.01]TGIVKWFNADKGFGFITPDDGSKDVFVHFSAIQNDGYKSLDEGQKVSFTIESGAKGPAAGNVTSL. 1 20.0 13.0 3.247030470972616E-8 7.292149752393142E-9 0.0
/home/xiaowen/c_project/proteomics_cpp/testcases/data/st_no_digestion.msalign 1057 1496 2000 143 11 11759.464533 11759.412664609375 6642 gi|16766730|ref|NP_462345.1| 30S ribosomal subunit protein S10 [Salmonella typhimurium LT2] 11759.412664609375 1 103 .MQNQRIRIRLKAFDHRLIDQSTAEIVETAKRTGAQVRGPIPLPTRKERFTVLISPHVNKDARDQYEIRTHKRLVDIVEPTEKTVDALMRLDLAAGVDVQISLG. 0 26.0 22.0 3.803100513218767E-9 7.606201026437534E-9 0.0
/home/xiaowen/c_project/proteomics_cpp/testcases/data/st_no_digestion.msalign 1722 2379 3178 49 12 11782.235556312502 11782.113416867676 7558 gi|16767191|ref|NP_462806.1| thioredoxin 1 [Salmonella typhimurium LT2] 11913.153913693848 2 109 M.SDKIIHLTDDSFDTDVLKADGAILVDFWAEWCGPCKMIAPILDEIADEYQGKLTVAKLNIDQNPGTAPKYGIRGIPTLLLFKNGEVAATKVGALSKGQLKEFLDANLA. 0 13.0 10.0 8.0487324801175E-9 8.0487324801175E-9 0.0
/home/xiaowen/c_project/proteomics_cpp/testcases/data/st_no_digestion.msalign 742 1158 1550 125 18 9518.34039792969 9518.289663510743 86 gi|16763433|ref|NP_459048.1| 30S ribosomal subunit protein S20 [Salmonella typhimurium LT2] 9649.330160336915 2 87 M.ANIKSAKKRAVQSEKARKHNASRRSMMRTFIKKVYAAIEAGDKAAALKAFNEMQPIVDRQAAKGLIHKNKAARHKANLTAQINKLA. 0 23.0 16.0 8.507345557450808E-9 8.507345557450808E-9 0.0
/home/xiaowen/c_project/proteomics_cpp/testcases/data/st_no_digestion.msalign 512 919 1231 57 12 7857.907916093751 7857.907916093751 7898 gi|16767362|ref|NP_462977.1| 50S ribosomal subunit protein L31 [Salmonella typhimurium LT2] 7941.9762403540035 1 70 .MKKGIHPNYVEI(T)[-84.07]ATCSCGNVIKTHSTVGHDLNLDVCGKCHPFFTGKQRVVDTGGRVERFNKRFSIPGSK. 1 16.0 12.0 6.301118342206979E-8 9.643729612632401E-9 0.0
/home/xiaowen/c_project/proteomics_cpp/testcases/data/st_no_digestion.msalign 1515 2104 2811 60 14 10849.75916977344 10849.70416977344 6412 gi|16766616|ref|NP_462231.1| putative sigma N modulation factor [Salmonella typhimurium LT2] 10850.697179990235 1 95 .(MQLNITGHNVEITEALREFVTTKFAKLEQY)[-.99]FERINQVYVVLKVEKVTHISDATLHVNGGEIHASAEGQDMYAAIDGLIDKLARQLTRHKDKLKQH. 1 22.0 14.0 3.70931882722888E-8 9.738834774317024E-9 0.0
/home/xiaowen/c_project/proteomics_cpp/testcases/data/st_no_digestion.msalign 117 502 675 51 8 11065.876618312499 11065.876618312499 1452 gi|16764124|ref|NP_459739.1| hypothetical protein STM0759 [Salmonella typhimurium LT2] 13436.224081235352 25 128 A.AESNAQSSNGQANSAANAGQVAPDARQNVAPNDVNNNDIN(TNGNTNSTMQHPDGSTMNHDGMTKDEEHKNTMCKD)[1.01]GRCPDINKKVETGNGVNNDVNTKTDGTTQ. 1 22.0 17.0 3.842265262697805E-10 9.98288726990689E-9 0.0
/home/xiaowen/c_project/proteomics_cpp/testcases/data/st_no_digestion.msalign 1068 1511 2020 14 7 7398.67485484375 7398.628027158203 7050 gi|16766935|ref|NP_462550.1| major cold shock protein [Salmonella typhimurium LT2] 7398.628027158203 1 70 .MSGKMTGIVKWFNADKGFGFITPDDGSKDVFVHFSAIQNDGYKSLDEGQKVSFTIESGAKGPAAGNVTSL. 0 10.0 9.0 5.0694662827828124E-9 1.0138932565565625E-8 0.0
/home/xiaowen/c_project/proteomics_cpp/testcases/data/st_no_digestion.msalign 735 1151 1540 148 14 9517.337641578126 9517.317641578125 86 gi|16763433|ref|NP_459048.1| 30S ribosomal subunit protein S20 [Salmonella typhimurium LT2] 9649.330160336915 2 87 M.ANIKSAKKRAVQSEKARKHNASRRSMMRTFIKKVYAAIEAGDKAAALKAFNEMQPIVDRQAAKGLIHKNKAARHKANLTA(Q)[-.97]INKLA. 1 25.0 20.0 7.764426607130277E-8 1.0274471879702471E-8 0.0
/home/xiaowen/c_project/proteomics_cpp/testcases/data/st_no_digestion.msalign 786 1203 1610 47 15 9518.34904233594 9518.289663510743 86 gi|16763433|ref|NP_459048.1| 30S ribosomal subunit protein S20 [Salmonella typhimurium LT2] 9649.330160336915 2 87 M.ANIKSAKKRAVQSEKARKHNASRRSMMRTFIKKVYAAIEAGDKAAALKAFNEMQPIVDRQAAKGLIHKNKAARHKANLTAQINKLA. 0 10.0 10.0 1.032489323197544E-8 1.032489323197544E-8 0.0
/home/xiaowen/c_project/proteomics_cpp/testcases/data/st_no_digestion.msalign 704 1119 1498 26 8 6509.636726125 6509.614042478027 6604 gi|16766711|ref|NP_462326.1| 50S ribosomal subunit protein L30 [Salmonella typhimurium LT2] 6509.614042478027 1 59 .MAKTIKITQTRSAIGRLPKHKATLLGLGLRRIGHTVEREDTPAVRGMVNAVSFMVKVEE. 0 11.0 10.0 5.289273654020323E-9 1.0578547308040647E-8 0.0
/home/xiaowen/c_project/proteomics_cpp/testcases/data/st_no_digestion.msalign 1553 2145 2866 17 13 12939.619775351563 12939.526521878663 2772 gi|16764781|ref|NP_460396.1| putative glutaredoxin protein [Salmonella typhimurium LT2] 13070.567018704834 2 115 M.STTIEKIQRQIAENPILLYMKGSPKLPSCGFSAQAVQALSACGERFAYVDILQNPDIRAELPKYANWPTFPQLWVDGELVGGCDIVIEMYQRGELQQLIKETAAKYKTQEPDAE. 0 7.0 7.0 1.101519455504623E-8 1.101519455504623E-8 0.0
/home/xiaowen/c_project/proteomics_cpp/testcases/data/st_no_digestion.msalign 1389 1927 2575 49 14 15459.06673753125 15458.961076932375 3388 gi|16765095|ref|NP_460710.1| DNA-binding protein HLP-II [Salmonella typhimurium LT2] 15590.001573758545 2 137 M.SEALKILNNIRTLRAQARECTLETLEEMLEKLEVVVNERREEESAAAAEVEERTRKLQQYREMLIADGIDPNELLNSMAAAKSGTKAKRAARPAKYSYVDENGETKTWTGQGRTPAVIKKAMEEQGKQLEDFLIKE. 0 16.0 14.0 1.1360841862752518E-8 1.1360841862752518E-8 0.0
/home/xiaowen/c_project/proteomics_cpp/testcases/data/st_no_digestion.msalign 322 722 968 99 10 8420.750747640628 8420.707170682374 6198 gi|16766509|ref|NP_462124.1| 30S ribosomal subunit protein S21 [Salmonella typhimurium LT2] 8551.747667508545 2 71 M.PVIKVRENEPFDVALRRFKRSCEKAGVLAEVRRREFYEKPTTERKRAKASAVKRHAKKLARENARRTRLY. 0 17.0 12.0 1.1524691294754778E-8 1.1524691294754778E-8 0.0
/home/xiaowen/c_project/proteomics_cpp/testcases/data/st_no_digestion.msalign 467 874 1171 96 12 8246.032384218752 8246.032384218752 7898 gi|16767362|ref|NP_462977.1| 50S ribosomal subunit protein L31 [Salmonella typhimurium LT2] 7941.9762403540035 1 70 .MKKGIHPNYVEITATC(SC)[304.06]GNVIKTHSTVGHDLNLDVCGKCHPFFTGKQRVVDTGGRVERFNKRFSIPGSK. 1 24.0 18.0 1.9579678701303828E-8 1.15392571904956E-8 0.0
/home/xiaowen/c_project/proteomics_cpp/testcases/data/st_no_digestion.msalign 49 422 568 73 7 4416.462178371094 4416.462178371094 6598 gi|16766708|ref|NP_462323.1| 50S ribosomal subunit protein X [Salmonella typhimurium LT2] 4532.514040189209 1 38 .MKVRASVK(KLCRNCK)[-116.05]IVKRDGVIRVICSAEPKHKQRQG. 1 16.0 13.0 2.6876598044929573E-7 1.3340068406976204E-8 0.0
/home/xiaowen/c_project/proteomics_cpp/testcases/data/st_no_digestion.msalign 651 1062 1422 45 17 11177.31769148047 11177.31769148047 6618 gi|16766718|ref|NP_462333.1| 50S ribosomal subunit protein L24 [Salmonella typhimurium LT2] 11309.309614377442 2 104 M.(AAKIRRDDEVIVLTGKDKGKRGKVKNVLSSG)[-.95]KVIVEGINLVKKHQKPVPALNQPGGIVEKEAAIQVSNVAIFNAATGKADRVGFRFEDGKKVRFFKSNSETIK. 1 16.0 12.0 1.1638146124683839E-7 1.366825042226204E-8 0.0
/home/xiaowen/c_project/proteomics_cpp/testcases/data/st_no_digestion.msalign 394 800 1072 66 12 7958.023375609375 7958.023375609375 7898 gi|16767362|ref|NP_462977.1| 50S ribosomal subunit protein L31 [Salmonella typhimurium LT2] 7941.9762403540035 1 70 .MKKGIHPNYVEITA(T)[16.05]CSCGNVIKTHSTVGHDLNLDVCGKCHPFFTGKQRVVDTGGRVERFNKRFSIPGSK. 1 17.0 16.0 5.848925699639166E-8 1.4540928455503678E-8 0.0
/home/xiaowen/c_project/proteomics_cpp/testcases/data/st_no_digestion.msalign 686 1101 1474 100 7 6378.613783281251 6378.573545651854 6604 gi|16766711|ref|NP_462326.1| 50S ribosomal subunit protein L30 [Salmonella typhimurium LT2] 6509.614042478027 2 59 M.AKTIKITQTRSAIGRLPKHKATLLGLGLRRIGHTVEREDTPAVRGMVNAVSFMVKVEE. 0 22.0 16.0 1.52147193498365E-8 1.52147193498365E-8 0.0
/home/xiaowen/c_project/proteomics_cpp/testcases/data/st_no_digestion.msalign 681 1096 1467 103 7 6378.613783281251 6378.573545651854 6604 gi|16766711|ref|NP_462326.1| 50S ribosomal subunit protein L30 [Salmonella typhimurium LT2] 6509.614042478027 2 59 M.AKTIKITQTRSAIGRLPKHKATLLGLGLRRIGHTVEREDTPAVRGMVNAVSFMVKVEE. 0 20.0 16.0 1.5345292370330196E-8 1.5345292370330196E-8 0.0
/home/xiaowen/c_project/proteomics_cpp/testcases/data/st_no_digestion.msalign 1176 1656 2214 57 16 12217.830394749999 12217.92039475 6630 gi|16766724|ref|NP_462339.1| 50S ribosomal subunit protein L22 [Salmonella typhimurium LT2] 12218.769315915528 1 110 .METIAKHRHARSSAQKVRLVADLIRGKKVSQALDIL(TYTNKKAAVLVKKVLESAI)[-.85]ANAEHNDGADIDDLKVTKIFVDEGPSMKRIMPRAKGRADRILKRTSHITVVVSDR. 1 13.0 13.0 6.933123952700261E-8 1.5795894060345182E-8 0.0
/home/xiaowen/c_project/proteomics_cpp/testcases/data/st_no_digestion.msalign 281 681 914 40 5 3455.576463851563 3455.56535931152 3040 gi|16764916|ref|NP_460531.1| putative outer membrane porin precursor [Salmonella typhimurium LT2] 39655.11356945556 22 52 A.AEVYNKDGNKLDLYGKVHAQHYFSDDNGSDG.D 0 14.0 10.0 6.833039840834006E-12 1.7104619900232834E-8 0.0
/home/xiaowen/c_project/proteomics_cpp/testcases/data/st_no_digestion.msalign 248 646 867 69 11 9512.696017429691 9512.696017429691 738 gi|16763764|ref|NP_459379.1| phosphate starvation-inducible protein [Salmonella typhimurium LT2] 11830.048254208985 22 106 A.TEKPLTPQQQRMTTCNQQATAQALKGDARKTYLSDCLKNSQSAPGEKSLT(PQQQKMRE)[-116.03]CNVQATEQSLKGDDRSKFMSACLKKAA. 1 25.0 20.0 3.227891437329348E-10 1.728592535019891E-8 0.0
/home/xiaowen/c_project/proteomics_cpp/testcases/data/st_no_digestion.msalign 692 1107 1482 97 6 6378.604213578125 6378.573545651856 6604 gi|16766711|ref|NP_462326.1| 50S ribosomal subunit protein L30 [Salmonella typhimurium LT2] 6509.614042478027 2 59 M.AKTIKITQTRSAIGRLPKHKATLLGLGLRRIGHTVEREDTPAVRGMVNAVSFMVKVEE. 0 21.0 13.0 1.772916582678304E-8 1.772916582678304E-8 0.0
/home/xiaowen/c_project/proteomics_cpp/testcases/data/st_no_digestion.msalign 848 1267 1695 12 9 7733.042145816407 7732.998460965573 8942 gi|17233500|ref|NP_490541.1| putative cytoplasmic protein [Salmonella typhimurium LT2] 35413.27932568115 246 313 M.TIAQQLEQKGIEKGIQLGEQRGIEKGRSEGEREATLKIARTMLQNCIDRNTVMKMTGLTEDDLAQIRH. 0 8.0 8.0 5.04906408126625E-10 1.8681537100685125E-8 0.0
/home/xiaowen/c_project/proteomics_cpp/testcases/data/st_no_digestion.msalign 255 653 876 47 6 2823.507289691406 2823.4999830297857 354 gi|16763570|ref|NP_459185.1| aspartate 1-decarboxylase [Salmonella typhimurium LT2] 13992.038381772461 1 24 .MIRTMLQGKLHRVKVTQADLHYEG.S 0 12.0 11.0 2.272336157911716E-10 1.8860390110667244E-8 0.0
/home/xiaowen/c_project/proteomics_cpp/testcases/data/st_no_digestion.msalign 1377 1909 2551 61 17 17503.39897532031 17503.29734631104 6606 gi|16766712|ref|NP_462327.1| 30S ribosomal subunit protein S5 [Salmonella typhimurium LT2] 17592.32727642578 2 167 M.(A)[42.01]HIEKQAGELQEKLIAVNRVSKTVKGGRIFSFTALTVVGDGNGRVGFGYGKAREVPAAIQKAMEKARRNMINVALNNGTLQHPVKGVHTGSRVFMQPASEGTGIIAGGAMRAVLEVAGVHNVLAKAYGSTNPINVVRATIDGLENMNSPEMVAAKRGKSVEEILGK. 0 13.0 12.0 1.8865277956429052E-8 1.8865277956429052E-8 0.0
/home/xiaowen/c_project/proteomics_cpp/testcases/data/st_no_digestion.msalign 1710 2356 3147 48 10 11232.858164468751 11232.765684323733 6542 gi|16766680|ref|NP_462295.1| factor-for-inversion stimulation protein [Salmonella typhimurium LT2] 11232.765684323731 1 98 .MFEQRVNSDVLTVSTVNSQDQVTQKPLRDSVKQALKNYFAQLNGQDVNDLYELVLAEVEQPLLDMVMQYTRGNQTRAALMMGINRGTLRKKLKKYGMN. 0 17.0 12.0 9.434733192450416E-9 1.8869466384900832E-8 0.0
/home/xiaowen/c_project/proteomics_cpp/testcases/data/st_no_digestion.msalign 887 1308 1750 89 15 10059.504360285155 10059.399360285155 6342 gi|16766581|ref|NP_462196.1| 30S ribosomal subunit protein S15 [Salmonella typhimurium LT2] 10191.46906109375 2 89 M.SLSTEATAKIVSEFGRDAND(T)[-1.03]GSTDVQVALLTAQINHLQGHFAEHKKDHHSRRGLLRMVSQRRKLLDYLKRKDVARYTALIERLGLRR. 1 24.0 17.0 1.9580972610505825E-7 1.9222899001651533E-8 0.0
/home/xiaowen/c_project/proteomics_cpp/testcases/data/st_no_digestion.msalign 840 1258 1683 47 12 8906.878176484375 8906.878176484375 8452 gi|16767639|ref|NP_463254.1| 30S ribosomal subunit protein S18 [Salmonella typhimurium LT2] 9122.931947904053 2 75 M.ARYFRRRKFCRFTAEGVQEIDYKDIATLKNYI(T)[-85.01]ESGKIVPSRITGTRAKYQRQLRRAIKRARYLSLLPYTDRHQ. 1 16.0 13.0 7.398478217251042E-8 2.0734281076149313E-8 0.0
/home/xiaowen/c_project/proteomics_cpp/testcases/data/st_no_digestion.msalign 304 704 944 140 18 8419.734165617188 8419.734165617188 6198 gi|16766509|ref|NP_462124.1| 30S ribosomal subunit protein S21 [Salmonella typhimurium LT2] 8551.747667508545 2 71 M.PVIKVRENEPFDVALRRFKRSCEKAGVLAEVRRREFYEKP(T)[-.97]TERKRAKASAVKRHAKKLARENARRTRLY. 1 21.0 17.0 2.0308934821711203E-7 2.0763190539620265E-8 0.0
/home/xiaowen/c_project/proteomics_cpp/testcases/data/st_no_digestion.msalign 624 1033 1383 186 19 11527.33752534375 11527.307525343751 6614 gi|39546367|ref|NP_462331.2| 30S ribosomal subunit protein S14 [Salmonella typhimurium LT2] 11113.053682523194 1 96 .(MK)[42.01](AREVKRVALAD)[372.24]KYFAKRAELKAIISDVNATDEDRWNAVLKLQTLPRDSSPSRQRNRCRQTGRPHAFLRKFGLSRIKVREAAMRGEIPGLKKASW. 1 35.0 23.0 1.4668629061674682E-8 2.0847891969818477E-8 0.0
/home/xiaowen/c_project/proteomics_cpp/testcases/data/st_no_digestion.msalign 1393 1932 2582 110 22 14957.376197242187 14957.307417111815 6602 gi|16766710|ref|NP_462325.1| 50S ribosomal subunit protein L15 [Salmonella typhimurium LT2] 14957.307417111817 1 144 .MRLNTLSPAEGSKKAGKRLGRGIGSGLGKTGGRGHKGQKSRSGGGVRRGFEGGQMPLYRRLPKFGFTSRKAAITAEVRLSDLAKVEGGVVDLNTLKAANIIGIQIEFAKVILAGEVTTPVTVRGLRVTKGARAAIEAAGGKIEE. 0 15.0 14.0 1.0544499322481588E-8 2.1088998644963176E-8 0.0
/home/xiaowen/c_project/proteomics_cpp/testcases/data/st_no_digestion.msalign 1711 2358 3150 50 10 11232.850840250001 11232.765684323733 6542 gi|16766680|ref|NP_462295.1| factor-for-inversion stimulation protein [Salmonella typhimurium LT2] 11232.765684323731 1 98 .MFEQRVNSDVLTVSTVNSQDQVTQKPLRDSVKQALKNYFAQLNGQDVNDLYELVLAEVEQPLLDMVMQYTRGNQTRAALMMGINRGTLRKKLKKYGMN. 0 17.0 11.0 1.0739335720624723E-8 2.1478671441249447E-8 0.0
/home/xiaowen/c_project/proteomics_cpp/testcases/data/st_no_digestion.msalign 1649 2276 3040 133 14 11210.834065351562 11210.704065351565 4466 gi|16765638|ref|NP_461253.1| putative inner membrane protein [Salmonella typhimurium LT2] 11629.921674924317 1 103 .(MRMSYQFGESR)[42.01](VDDDL)[-461.23]TLLSETLEEVLRSSGDPADQKYIELKARAEQALEEVKNRVSHASDSYYYRAKQAVYKADDYVHEKPWQGIGVGAAVGLVLGLLLARR. 1 27.0 21.0 1.4286898154643541E-8 2.221919436933827E-8 0.0
/home/xiaowen/c_project/proteomics_cpp/testcases/data/st_no_digestion.msalign 1713 2360 3152 65 14 11232.862019453125 11232.862019453125 6542 gi|16766680|ref|NP_462295.1| factor-for-inversion stimulation protein [Salmonella typhimurium LT2] 11232.765684323731 1 98 .MFEQRVNSDVLT(VSTVNSQDQVTQKPLRDSVKQALKNYFAQLNGQD)[-18.05]VNDLYELVL(A)[18.15]EVEQPLLDMVMQYTRGNQTRAALMMGINRGTLRKKLKKYGMN. 2 25.0 19.0 1.046674913791717E-9 2.302045944677205E-8 0.0
/home/xiaowen/c_project/proteomics_cpp/testcases/data/st_no_digestion.msalign 802 1219 1631 41 12 9518.347066625003 9518.289663510743 86 gi|16763433|ref|NP_459048.1| 30S ribosomal subunit protein S20 [Salmonella typhimurium LT2] 9649.330160336915 2 87 M.ANIKSAKKRAVQSEKARKHNASRRSMMRTFIKKVYAAIEAGDKAAALKAFNEMQPIVDRQAAKGLIHKNKAARHKANLTAQINKLA. 0 9.0 9.0 2.3244227391129182E-8 2.3244227391129182E-8 0.0
/home/xiaowen/c_project/proteomics_cpp/testcases/data/st_no_digestion.msalign 792 1209 1618 39 10 6537.654136546875 6537.654136546875 6604 gi|16766711|ref|NP_462326.1| 50S ribosomal subunit protein L30 [Salmonella typhimurium LT2] 6509.614042478027 1 59 .(MAKTIKIT)[28.04]QTRSAIGRLPKHKATLLGLGLRRIGHTVEREDTPAVRGMVNAVSFMVKVEE. 1 19.0 14.0 3.8381523656298583E-7 2.3430581301810183E-8 0.0
/home/xiaowen/c_project/proteomics_cpp/testcases/data/st_no_digestion.msalign 1808 2564 3424 26 11 11486.880252414066 11486.847742276612 1792 gi|16764292|ref|NP_459907.1| putative cytoplasmic protein [Salmonella typhimurium LT2] 11486.847742276612 1 107 .MQFSTTPTLEGQSIVEYCGVVTGEAILGANIFRDFFAGIRDIVGGRSGAYEKELRKAREIAFQELGEQAKALGADAVVGIDIDYETVGKDGSMLMVSVSGTAVKTRR. 0 9.0 9.0 1.4068423481285669E-8 2.8136846962571338E-8 0.0
/home/xiaowen/c_project/proteomics_cpp/testcases/data/st_no_digestion.msalign 696 1111 1487 98 7 6378.603102128907 6378.573545651854 6604 gi|16766711|ref|NP_462326.1| 50S ribosomal subunit protein L30 [Salmonella typhimurium LT2] 6509.614042478027 2 59 M.AKTIKITQTRSAIGRLPKHKATLLGLGLRRIGHTVEREDTPAVRGMVNAVSFMVKVEE. 0 21.0 16.0 2.9107467239247408E-8 2.9107467239247408E-8 0.0
/home/xiaowen/c_project/proteomics_cpp/testcases/data/st_no_digestion.msalign 1189 1669 2231 80 9 7272.031459769532 7272.031459769532 6624 gi|16766721|ref|NP_462336.1| 50S ribosomal subunit protein L29 [Salmonella typhimurium LT2] 7255.987646298828 1 63 .MKAKELREKSVEELNTELLNLLREQ(FNLRMQA)[16.04]ASGQLQQSHLLKQVRRDVARVKTLLTEKAGA. 1 24.0 20.0 7.55364655916075E-8 3.035446858033116E-8 0.0
/home/xiaowen/c_project/proteomics_cpp/testcases/data/st_no_digestion.msalign 710 1125 1506 67 10 6508.6520813515635 6508.6520813515635 6604 gi|16766711|ref|NP_462326.1| 50S ribosomal subunit protein L30 [Salmonella typhimurium LT2] 6509.614042478027 1 59 .MAKTIKITQTRSAIGRLPKHK(ATLLGLGLRRIGHTVERED)[-.96]TPAVRGMVNAVSFMVKVEE. 1 19.0 16.0 3.881285065569828E-7 3.1315718519629775E-8 0.0
/home/xiaowen/c_project/proteomics_cpp/testcases/data/st_no_digestion.msalign 827 1245 1666 38 10 10658.622669359378 10658.552923398438 3628 gi|16765217|ref|NP_460832.1| putative copper resistance protein [Salmonella typhimurium LT2] 13312.989523129883 27 124 A.HAHLTHQYPAANAAVTASPQALTLNFSEGIEPGFSGATITGPQQELIKTRPAKRNEQDKTQLIIPLEQPLKSGAYTVDWHVVSVDGHKTKGKYTFSVK. 0 12.0 12.0 8.54243637186748E-10 3.1607014575909676E-8 0.0
/home/xiaowen/c_project/proteomics_cpp/testcases/data/st_no_digestion.msalign 396 802 1075 42 6 2555.4608369375 2555.4447614721685 6198 gi|16766509|ref|NP_462124.1| 30S ribosomal subunit protein S21 [Salmonella typhimurium LT2] 8551.747667508545 2 22 M.PVIKVRENEPFDVALRRFKRS.C 0 16.0 12.0 7.798469676073609E-10 3.5872960509938604E-8 0.0
/home/xiaowen/c_project/proteomics_cpp/testcases/data/st_no_digestion.msalign 1349 1868 2496 53 18 13079.369962445313 13079.289797025149 6596 gi|16766707|ref|NP_462322.1| 30S ribosomal subunit protein S13 [Salmonella typhimurium LT2] 13210.330293851319 2 118 M.ARIAGINIPDQKHAVIALTSIYGVGKTRSKAILAAAGIAENVKISELSEEQIDTLRDEVAKFVVEGDLRREISMSIKRLMDLGCYRGLRHRRGLPVRGQRTKTNARTRKGPRKPIKK. 0 13.0 10.0 3.761458392196528E-8 3.761458392196528E-8 0.0
/home/xiaowen/c_project/proteomics_cpp/testcases/data/st_no_digestion.msalign 995 1425 1906 127 17 14442.76554548047 14442.689371304932 6588 gi|16766703|ref|NP_462318.1| 50S ribosomal subunit protein L17 [Salmonella typhimurium LT2] 14442.689371304932 1 127 .MRHRKSGRQLNRNSSHRQAMFRNMAGSLVRHEIIKTTLPKAKELRRVVEPLITLAKTDSVANRRLAFARTRDNEIVAKLFNELGPRFASRAGGYTRILKCGFRAGDNAPMAYIELVDRSEKTEAAAE. 0 15.0 15.0 2.055692688643122E-8 4.111385377286244E-8 0.0
/home/xiaowen/c_project/proteomics_cpp/testcases/data/st_no_digestion.msalign 1066 1508 2016 179 15 11759.475712203124 11759.412664609374 6642 gi|16766730|ref|NP_462345.1| 30S ribosomal subunit protein S10 [Salmonella typhimurium LT2] 11759.412664609375 1 103 .MQNQRIRIRLKAFDHRLIDQSTAEIVETAKRTGAQVRGPIPLPTRKERFTVLISPHVNKDARDQYEIRTHKRLVDIVEPTEKTVDALMRLDLAAGVDVQISLG. 0 31.0 20.0 2.0949683214322937E-8 4.1899366428645875E-8 0.0
/home/xiaowen/c_project/proteomics_cpp/testcases/data/st_no_digestion.msalign 773 1190 1592 125 11 12995.487810976563 12995.41010494751 7524 gi|16767174|ref|NP_462789.1| putative transcriptional regulator [Salmonella typhimurium LT2] 13126.450601773682 2 112 M.AESFTTTNRYFDNKHYPRGFSRHGDFTIKEAQLLERHGHAFNDLDLGKREPVTEEEKLFVAVCRGEREPVTDAERVWSKYMTRIKRPKRFHTLSGGKPQVEGAEDYTEADD. 0 19.0 17.0 4.824818104539281E-8 4.824818104539281E-8 0.0
/home/xiaowen/c_project/proteomics_cpp/testcases/data/st_no_digestion.msalign 395 801 1074 42 6 2555.4608369375 2555.4447614721685 6198 gi|16766509|ref|NP_462124.1| 30S ribosomal subunit protein S21 [Salmonella typhimurium LT2] 8551.747667508545 2 22 M.PVIKVRENEPFDVALRRFKRS.C 0 15.0 12.0 1.066593006769919E-9 4.906327831141627E-8 0.0
/home/xiaowen/c_project/proteomics_cpp/testcases/data/st_no_digestion.msalign 380 784 1051 42 6 2554.4748139882813 2554.469813988281 6198 gi|16766509|ref|NP_462124.1| 30S ribosomal subunit protein S21 [Salmonella typhimurium LT2] 8551.747667508545 2 71 M.PVIKVRENEPFD(VALRRFKRSCEKAGVLAEVRRREFYEKPTTERKRAKASAVKRHAKKLAREN)[-5866.24]ARRTRLY. 1 18.0 14.0 6.050650809731824E-8 5.168050329393054E-8 0.0
/home/xiaowen/c_project/proteomics_cpp/testcases/data/st_no_digestion.msalign 865 1285 1719 79 15 8948.887484414061 8948.887484414061 8452 gi|16767639|ref|NP_463254.1| 30S ribosomal subunit protein S18 [Salmonella typhimurium LT2] 9122.931947904053 2 75 M.(ARYFRRRKFCRFTAE)[42.01]GVQEIDYKDIATLKNYITE(SGKIVPSRITGTRAKYQRQLRRAI)[-85.01]KRARYLSLLPYTDRHQ. 1 19.0 16.0 3.37746548506978E-7 5.373040151323319E-8 0.0
/home/xiaowen/c_project/proteomics_cpp/testcases/data/st_no_digestion.msalign 1971 3115 4159 51 8 11759.4629235 11759.412664609375 6642 gi|16766730|ref|NP_462345.1| 30S ribosomal subunit protein S10 [Salmonella typhimurium LT2] 11759.412664609375 1 103 .MQNQRIRIRLKAFDHRLIDQSTAEIVETAKRTGAQVRGPIPLPTRKERFTVLISPHVNKDARDQYEIRTHKRLVDIVEPTEKTVDALMRLDLAAGVDVQISLG. 0 13.0 12.0 2.773791039921393E-8 5.547582079842786E-8 0.0
/home/xiaowen/c_project/proteomics_cpp/testcases/data/st_no_digestion.msalign 265 665 892 47 6 2823.5085714296874 2823.4999830297857 354 gi|16763570|ref|NP_459185.1| aspartate 1-decarboxylase [Salmonella typhimurium LT2] 13992.038381772461 1 24 .MIRTMLQGKLHRVKVTQADLHYEG.S 0 12.0 10.0 7.180412677593013E-10 5.67252601529848E-8 0.0
/home/xiaowen/c_project/proteomics_cpp/testcases/data/st_no_digestion.msalign 1951 3076 4107 34 7 7267.635672414062 7267.58753033203 7050 gi|16766935|ref|NP_462550.1| major cold shock protein [Salmonella typhimurium LT2] 7398.628027158203 2 70 M.SGKMTGIVKWFNADKGFGFITPDDGSKDVFVHFSAIQNDGYKSLDEGQKVSFTIESGAKGPAAGNVTSL. 0 13.0 11.0 5.69775647977125E-8 5.69775647977125E-8 0.0
/home/xiaowen/c_project/proteomics_cpp/testcases/data/st_no_digestion.msalign 319 719 964 139 12 8420.755238609378 8420.707170682374 6198 gi|16766509|ref|NP_462124.1| 30S ribosomal subunit protein S21 [Salmonella typhimurium LT2] 8551.747667508545 2 71 M.PVIKVRENEPFDVALRRFKRSCEKAGVLAEVRRREFYEKPTTERKRAKASAVKRHAKKLARENARRTRLY. 0 18.0 14.0 6.027166386167379E-8 6.027166386167379E-8 0.0
/home/xiaowen/c_project/proteomics_cpp/testcases/data/st_no_digestion.msalign 1784 2485 3319 49 9 8095.1817426601565 8095.15341015381 4302 gi|16765556|ref|NP_461171.1| putative cytoplasmic protein [Salmonella typhimurium LT2] 8226.193906979981 2 75 M.PQLSRYSDEHVEQLLSELLSVLEKHKAPTDLSLMVLGNMVTNLINTSVAPAQRQAIANSFARALQSSISEDNAH. 0 10.0 10.0 6.422932288068476E-8 6.422932288068476E-8 0.0
/home/xiaowen/c_project/proteomics_cpp/testcases/data/st_no_digestion.msalign 1689 2321 3100 37 17 17715.541969726564 17715.418695645752 7984 gi|16767405|ref|NP_463020.1| 50S ribosomal subunit protein L10 [Salmonella typhimurium LT2] 17846.459192471924 2 165 M.ALNLQDKQAIVAEVSEVAKGALSAVVADSRGVTVDKMTELRKAGREAGVYMRVVRNTLLRRVVEGTQFECLKDTFVGPTLIAYSMEHPGAAARLFKEFAKANAKFEVKAAAFEGELIPASQIDRLATLPTYEEAIARLMATMKEASAGKLVRTLAAVRDAKEAA. 0 11.0 10.0 6.906370227299835E-8 6.906370227299835E-8 0.0
/home/xiaowen/c_project/proteomics_cpp/testcases/data/st_no_digestion.msalign 1228 1716 2294 143 13 11206.309603070313 11206.238477902833 6636 gi|16766727|ref|NP_462342.1| 50S ribosomal subunit protein L23 [Salmonella typhimurium LT2] 11206.238477902833 1 100 .MIREERLLKVLRAPHVSEKASTAMEKTNTIVLKVAKDATKAEIKAAVQKLFEVEVEVVNTLVVKGKVKRHGQRIGRRSDWKKAYVTLKEGQNLDFVGGAE. 0 21.0 17.0 3.490118086297241E-8 6.980236172594481E-8 0.0
/home/xiaowen/c_project/proteomics_cpp/testcases/data/st_no_digestion.msalign 834 1252 1675 57 15 10406.187342542968 10406.197342542968 1966 gi|16764378|ref|NP_459993.1| hypothetical protein STM1018 [Phage Gifsy-2] 11265.5324689917 8 96 L.MYQRMIFEEGKEPRLYSSQHDSKFIPI(SNNNG)[34.06]KVQKVPVMELKDTRGDVFYAYNYAYSGKKPSNDEIYKAIDELKPIGEKFEMSKTISD. 1 16.0 16.0 3.3415174703415197E-9 7.958590229100194E-8 0.0
/home/xiaowen/c_project/proteomics_cpp/testcases/data/st_no_digestion.msalign 1384 1921 2567 80 16 15458.072205062499 15458.0372050625 3388 gi|16765095|ref|NP_460710.1| DNA-binding protein HLP-II [Salmonella typhimurium LT2] 15590.001573758545 2 137 M.(SEALKILNNI)[-.92]RTLRAQARECTLETLEEMLEKLEVVVNERREEESAAAAEVEERTRKLQQYREMLIADGIDPNELLNSMAAAKSGTKAKRAARPAKYSYVDENGETKTWTGQGRTPAVIKKAMEEQGKQLEDFLIKE. 1 21.0 18.0 3.7770891700220737E-7 7.986844614654717E-8 0.0
/home/xiaowen/c_project/proteomics_cpp/testcases/data/st_no_digestion.msalign 549 956 1280 87 8 6525.63867925 6525.623679249999 6604 gi|16766711|ref|NP_462326.1| 50S ribosomal subunit protein L30 [Salmonella typhimurium LT2] 6509.614042478027 1 59 .MAKTIKITQTRSAIGRLPKHKATLLGLGLRRIGHTVEREDTPAVRGMVNAVSF(M)[16.01]VKVEE. 1 21.0 17.0 3.209531803136372E-7 8.237111868727628E-8 0.0
/home/xiaowen/c_project/proteomics_cpp/testcases/data/st_no_digestion.msalign 400 806 1080 61 12 7825.920140125001 7825.915140125002 7898 gi|16767362|ref|NP_462977.1| 50S ribosomal subunit protein L31 [Salmonella typhimurium LT2] 7941.9762403540035 1 70 .MKKGIHPNYVEITA(TCSCGNVIKTHSTVGHDLNLDVCGKCH)[-116.06]PFFTGKQRVVDTGGRVERFNKRFSIPGSK. 1 17.0 14.0 3.965499792477107E-7 8.369942780884328E-8 0.0
/home/xiaowen/c_project/proteomics_cpp/testcases/data/st_no_digestion.msalign 551 958 1283 58 5 4274.243361039064 4274.226270871578 2072 gi|16764429|ref|NP_460044.1| putative hydrogenase membrane component precurosr [Salmonella typhimurium LT2] 37605.86566753906 313 350 G.NTCDNVKPRAALIDCLAPDRRVEIEVKGVKDVVTQPQA. 0 12.0 12.0 2.207912619030813E-9 8.61085921422017E-8 0.0
/home/xiaowen/c_project/proteomics_cpp/testcases/data/st_no_digestion.msalign 828 1246 1667 25 10 10658.622669359378 10658.552923398438 3628 gi|16765217|ref|NP_460832.1| putative copper resistance protein [Salmonella typhimurium LT2] 13312.989523129883 27 124 A.HAHLTHQYPAANAAVTASPQALTLNFSEGIEPGFSGATITGPQQELIKTRPAKRNEQDKTQLIIPLEQPLKSGAYTVDWHVVSVDGHKTKGKYTFSVK. 0 10.0 10.0 2.506691999890567E-9 9.274760399595097E-8 0.0
/home/xiaowen/c_project/proteomics_cpp/testcases/data/st_no_digestion.msalign 1797 2532 3382 25 8 8794.4573683125 8794.4573683125 816 gi|16763804|ref|NP_459419.1| exonuclease VII small subunit [Salmonella typhimurium LT2] 8926.463331418458 2 80 M.PKKNEAPASFETALSELEHIVTRLESGD(L)[-.97]PLEDALNEFERGVQLARQGQAKLQQAEQRVQILLSDNEEASPEPFIADNE. 1 12.0 12.0 5.271226867993255E-7 9.364995395935392E-8 0.0
/home/xiaowen/c_project/proteomics_cpp/testcases/data/st_no_digestion.msalign 698 1113 1490 37 10 7655.9958793515625 7655.959249692384 702 gi|16763746|ref|NP_459361.1| putative periplasmic protein [Salmonella typhimurium LT2] 9913.159528928223 22 91 A.AEIMKKTDFDKVASEYTKIGTISTTGEMSPLDAREDLIKKADEKGADVVVLTSGQTENKIHGTADIYKKK. 0 10.0 9.0 3.502345352357453E-9 9.806566986600869E-8 0.0
/home/xiaowen/c_project/proteomics_cpp/testcases/data/st_no_digestion.msalign 501 908 1216 45 8 4366.379621093749 4366.379621093749 6594 gi|16766706|ref|NP_462321.1| 30S ribosomal subunit protein S11 [Salmonella typhimurium LT2] 13936.400747495118 91 129 G.PGRESTIRALNAAGFRITNITDVTPIPH(N)[1.00]GCRPPKKRRV. 1 17.0 13.0 8.866801378608635E-9 9.932033215181839E-8 0.0
/home/xiaowen/c_project/proteomics_cpp/testcases/data/st_no_digestion.msalign 626 1035 1386 185 20 11527.327563796876 11527.302563796877 6614 gi|39546367|ref|NP_462331.2| 30S ribosomal subunit protein S14 [Salmonella typhimurium LT2] 11113.053682523194 1 96 .(MKAREVKRVALA)[414.25]DKYFAKRAELKAIISDVNATDEDRWNAVLKLQTLPRDSSPSRQRNRCRQTGRPHAFLRKFGLSRIKVREAAMRGEIPGLKKASW. 1 35.0 24.0 5.772702962549508E-10 1.0568083395244722E-7 0.0
/home/xiaowen/c_project/proteomics_cpp/testcases/data/st_no_digestion.msalign 625 1034 1384 180 18 11527.336622632814 11527.256622632814 6614 gi|39546367|ref|NP_462331.2| 30S ribosomal subunit protein S14 [Salmonella typhimurium LT2] 11113.053682523194 1 96 .(MK)[42.01]AREVKRVA(LAD)[372.19]KYFAKRAELKAIISDVNATDEDRWNAVLKLQTLPRDSSPSRQRNRCRQTGRPHAFLRKFGLSRIKVREAAMRGEIPGLKKASW. 1 30.0 22.0 8.563492559931291E-8 1.2045450440649993E-7 0.0
/home/xiaowen/c_project/proteomics_cpp/testcases/data/st_no_digestion.msalign 72 445 599 105 14 6310.40300520703 6310.40300520703 2302 gi|16764546|ref|NP_460161.1| 50S ribosomal subunit protein L32 [Salmonella typhimurium LT2] 6442.431486325683 2 57 M.AVQQNKPTRSKRGMRRSHDALTAV(TS)[-.99]LSVDKTSGEKHLRHHITADGYYRGRKVIAK. 1 18.0 14.0 1.840508540081688E-6 1.2393640241125613E-7 0.0
/home/xiaowen/c_project/proteomics_cpp/testcases/data/st_no_digestion.msalign 1861 2659 3551 22 16 12291.577454062499 12291.470907407227 7986 gi|16767406|ref|NP_463021.1| 50S ribosomal subunit protein L7/L12 [Salmonella typhimurium LT2] 12291.470907407227 1 121 .MSITKDQIIEAVSAMSVMDVVELISAMEEKFGVSAAAAVAVAAGPAEAAEEKTEFDVILKAAGANKVAVIKAVRGATGLGLKEAKDLVESAPAALKEGVSKDDAEALKKSLEEAGAEVEVK. 0 17.0 8.0 6.339538280261776E-8 1.2679076560523552E-7 0.0
/home/xiaowen/c_project/proteomics_cpp/testcases/data/st_no_digestion.msalign 725 1140 1526 89 14 9517.338496070313 9517.338496070313 86 gi|16763433|ref|NP_459048.1| 30S ribosomal subunit protein S20 [Salmonella typhimurium LT2] 9649.330160336915 2 87 M.ANIKSAKKRAVQSEKARKHNASRRSMMRTFIKKVYAAIEAGDKAAALKAFNEM(Q)[-.95]PIVDRQAAKGLIHKNKAARHKANLTAQINKLA. 1 19.0 15.0 9.991774537618574E-7 1.3059887910774879E-7 0.0
/home/xiaowen/c_project/proteomics_cpp/testcases/data/st_no_digestion.msalign 815 1232 1648 44 11 9518.389376804691 9518.28966351074 86 gi|16763433|ref|NP_459048.1| 30S ribosomal subunit protein S20 [Salmonella typhimurium LT2] 9649.330160336915 2 87 M.ANIKSAKKRAVQSEKARKHNASRRSMMRTFIKKVYAAIEAGDKAAALKAFNEMQPIVDRQAAKGLIHKNKAARHKANLTAQINKLA. 0 9.0 8.0 1.405186714817303E-7 1.405186714817303E-7 0.0
/home/xiaowen/c_project/proteomics_cpp/testcases/data/st_no_digestion.msalign 1391 1930 2579 84 21 15458.11474351953 15458.019743519531 3388 gi|16765095|ref|NP_460710.1| DNA-binding protein HLP-II [Salmonella typhimurium LT2] 15590.001573758545 2 137 M.SEALKILNNIRTLRAQARECTLET(LEEMLEKLEVVVNERREEESAAAAE)[-.94]VEERTRKLQQYREMLIADGIDPNELLNSMAAAKSGTKAKRAARPAKYSYVDENGETKTWTGQGRTPAVIKKAMEEQGKQLEDFLIKE. 1 22.0 17.0 6.888685915928257E-7 1.4600259218740378E-7 0.0
/home/xiaowen/c_project/proteomics_cpp/testcases/data/st_no_digestion.msalign 428 834 1118 87 15 7942.024505828127 7941.9762403540035 7898 gi|16767362|ref|NP_462977.1| 50S ribosomal subunit protein L31 [Salmonella typhimurium LT2] 7941.9762403540035 1 70 .MKKGIHPNYVEITATCSCGNVIKTHSTVGHDLNLDVCGKCHPFFTGKQRVVDTGGRVERFNKRFSIPGSK. 0 13.0 12.0 7.377108213393816E-8 1.475421642678763E-7 0.0
/home/xiaowen/c_project/proteomics_cpp/testcases/data/st_no_digestion.msalign 785 1202 1608 57 7 8720.280818421876 8720.280818421876 7294 gi|16767058|ref|NP_462673.1| putative inner membrane protein [Salmonella typhimurium LT2] 11089.657293515625 22 97 A.DSPFSSLQSAHEKNTILKD(LRKMCTPKGALTDEAWEKKIMASEGNQQHIREAMIAIERNNQHNYWQAL)[-116.01]GKVECPEM. 1 25.0 20.0 3.0765674759738086E-9 1.544271418585621E-7 0.0
/home/xiaowen/c_project/proteomics_cpp/testcases/data/st_no_digestion.msalign 618 1027 1375 182 17 11527.328334667971 11527.31833466797 6614 gi|39546367|ref|NP_462331.2| 30S ribosomal subunit protein S14 [Salmonella typhimurium LT2] 11113.053682523194 1 96 .(MKAREVKRVALADKYFAKR)[42.01](AE)[372.25]LKAIISDVNATDEDRWNAVLKLQTLPRDSSPSRQRNRCRQTGRPHAFLRKFGLSRIKVREAAMRGEIPGLKKASW. 1 38.0 22.0 1.1123154829808797E-7 1.5808861842535652E-7 0.0
/home/xiaowen/c_project/proteomics_cpp/testcases/data/st_no_digestion.msalign 1168 1647 2202 34 13 12513.604340015625 12513.507917600098 5146 gi|16765980|ref|NP_461595.1| ribosome stabilization factor [Salmonella typhimurium LT2] 12644.54841442627 2 112 M.TMNITSKQMEITPAIRQHVADRLAKLEKWQTHLINPHIILSKEPQGFIADATINTPNGHLVASAKHEDMYTAINELINKLERQLNKVQHKGEARRATASVKDASFVEAEEE. 0 10.0 10.0 1.584718258159462E-7 1.584718258159462E-7 0.0
/home/xiaowen/c_project/proteomics_cpp/testcases/data/st_no_digestion.msalign 326 726 974 140 14 8420.739832117188 8420.707170682374 6198 gi|16766509|ref|NP_462124.1| 30S ribosomal subunit protein S21 [Salmonella typhimurium LT2] 8551.747667508545 2 71 M.PVIKVRENEPFDVALRRFKRSCEKAGVLAEVRRREFYEKPTTERKRAKASAVKRHAKKLARENARRTRLY. 0 13.0 12.0 1.605782128338237E-7 1.605782128338237E-7 0.0
/home/xiaowen/c_project/proteomics_cpp/testcases/data/st_no_digestion.msalign 1974 3118 4163 72 10 11758.472053140627 11758.472053140627 6642 gi|16766730|ref|NP_462345.1| 30S ribosomal subunit protein S10 [Salmonella typhimurium LT2] 11759.412664609375 1 103 .MQNQRIRIRLKAFD(HR)[-.94]LIDQSTAEIVETAKRTGAQVRGPIPLPTRKERFTVLISPHVNKDARDQYEIRTHKRLVDIVEPTEKTVDALMRLDLAAGVDVQISLG. 1 19.0 16.0 8.318637461887739E-7 1.7422821802088178E-7 0.0
/home/xiaowen/c_project/proteomics_cpp/testcases/data/st_no_digestion.msalign 1906 2767 3695 88 13 12201.572673734378 12201.572673734378 7986 gi|16767406|ref|NP_463021.1| 50S ribosomal subunit protein L7/L12 [Salmonella typhimurium LT2] 12291.470907407227 2 121 M.(SITKDQI)[42.01]IEAVSAMSVMDVVELISAMEEKFGVSAAAAVAVA(AGPAEAAEEKTEFD)[-.87]VILKAAGANKVAVIKAVRGATGLGLKEAKDLVESAPAALKEGVSKDDAEALKKSLEEAGAEVEVK. 1 17.0 15.0 6.611970603048639E-7 1.824387098319913E-7 0.0
/home/xiaowen/c_project/proteomics_cpp/testcases/data/st_no_digestion.msalign 793 1210 1619 33 10 6537.654136546875 6537.639136546874 6604 gi|16766711|ref|NP_462326.1| 50S ribosomal subunit protein L30 [Salmonella typhimurium LT2] 6509.614042478027 1 59 .(MAKTIKIT)[28.03]QTRSAIGRLPKHKATLLGLGLRRIGHTVEREDTPAVRGMVNAVSFMVKVEE. 1 12.0 9.0 3.0933140914813003E-6 1.888360346543817E-7 0.0
/home/xiaowen/c_project/proteomics_cpp/testcases/data/st_no_digestion.msalign 466 873 1170 95 12 8246.032384218752 8246.032384218752 7898 gi|16767362|ref|NP_462977.1| 50S ribosomal subunit protein L31 [Salmonella typhimurium LT2] 7941.9762403540035 1 70 .MKKGIHPNYVEITATC(SCGNVIKTHSTVGHDLNLD)[304.06]VCGKCHPFFTGKQRVVDTGGRVERFNKRFSIPGSK. 1 21.0 16.0 3.5365780332888233E-7 2.0842774860069232E-7 0.0
/home/xiaowen/c_project/proteomics_cpp/testcases/data/st_no_digestion.msalign 1087 1541 2060 51 7 7446.832323546876 7446.832323546876 1216 gi|16764006|ref|NP_459621.1| negative regulator [Salmonella typhimurium LT2] 7446.7773954443355 1 69 .(MS)[1.02]KIKGNVKWFNESKGFGFITPEDGSKDVFVHFSAIQTNGFKTLAEGQRVEFEITNGAKGPSAANVT(AL)[-.96]. 2 28.0 21.0 2.029387313486927E-8 2.1090963249879352E-7 0.0
/home/xiaowen/c_project/proteomics_cpp/testcases/data/st_no_digestion.msalign 1131 1604 2144 48 13 8740.668854082032 8740.668854082032 3630 gi|16765218|ref|NP_460833.1| DNA polymerase III theta subunit [Salmonella typhimurium LT2] 8741.605169492188 1 76 .MKTNLAQ(L)[-.94]EQAEMDKVNVDLAAAGVAFKERYNMPVVAEAVEREQPEHLRAWFRERLIAHRLASVSLSRLPYEPKVK. 1 17.0 15.0 1.1709173488567996E-6 2.1668221402332235E-7 0.0
/home/xiaowen/c_project/proteomics_cpp/testcases/data/st_no_digestion.msalign 544 951 1274 105 8 6394.602594031249 6394.602594031249 6604 gi|16766711|ref|NP_462326.1| 50S ribosomal subunit protein L30 [Salmonella typhimurium LT2] 6509.614042478027 2 59 M.AKTIKITQTRSAIGRLPKHKATLLGLGLRRIGHTVEREDTPAVRGMVNAVSF(M)[16.03]VKVEE. 1 26.0 19.0 8.80321164950888E-7 2.2250764739107928E-7 0.0
/home/xiaowen/c_project/proteomics_cpp/testcases/data/st_no_digestion.msalign 1192 1672 2235 98 7 7272.032889210937 7272.032889210937 6624 gi|16766721|ref|NP_462336.1| 50S ribosomal subunit protein L29 [Salmonella typhimurium LT2] 7255.987646298828 1 63 .MKAKELREKSVEELNT(ELLNLLREQFNLRMQAASGQLQQSHLLKQVRRD)[16.05]VARVKTLLTEKAGA. 1 22.0 20.0 5.617417497948818E-7 2.2594617183593945E-7 0.0
/home/xiaowen/c_project/proteomics_cpp/testcases/data/st_no_digestion.msalign 1791 2509 3351 14 7 8119.04828440625 8119.04828440625 3764 gi|16765287|ref|NP_460902.1| putative cytoplasmic protein [Salmonella typhimurium LT2] 8234.038629727784 2 74 M.STPDFSTAENNQELATEVNCLKAMLTLML(QAMGQADAGRVILKMEKQIAQMDDEAQA)[16.05]AVFSSTVKQIKQAYRQ. 1 9.0 9.0 7.508104564049667E-7 2.4073383592910176E-7 0.0
/home/xiaowen/c_project/proteomics_cpp/testcases/data/st_no_digestion.msalign 1402 1943 2596 66 22 14956.452369117187 14956.357369117188 6602 gi|16766710|ref|NP_462325.1| 50S ribosomal subunit protein L15 [Salmonella typhimurium LT2] 14957.307417111817 1 144 .MRLNTLSPAEGSKKAGKRLGRGIGSGLGKTGGRGHKGQKSRSGGGVRRGFEGGQMPLYRRLPKFGFTSRKAAITAEVRLSDLAKVEGGVVDLNTLKAANII(GI)[-.95]QIEFAKVILAGEVTTPVTVRGLRVTKGARAAIEAAGGKIEE. 1 12.0 12.0 1.0662807817359932E-6 2.832565832471002E-7 0.0
/home/xiaowen/c_project/proteomics_cpp/testcases/data/st_no_digestion.msalign 1067 1510 2019 16 7 7398.67485484375 7398.628027158203 7050 gi|16766935|ref|NP_462550.1| major cold shock protein [Salmonella typhimurium LT2] 7398.628027158203 1 70 .MSGKMTGIVKWFNADKGFGFITPDDGSKDVFVHFSAIQNDGYKSLDEGQKVSFTIESGAKGPAAGNVTSL. 0 9.0 7.0 1.4631556969040956E-7 2.9263113938081913E-7 0.0
/home/xiaowen/c_project/proteomics_cpp/testcases/data/st_no_digestion.msalign 1495 2072 2768 27 8 8375.30414 8375.250936704102 2828 gi|39546317|ref|NP_460424.2| putative cytoplasmic protein [Salmonella typhimurium LT2] 9025.52433605713 6 76 Y.MTVQDYLLKFRKISSLESLEKLFDHLNYTLTDDMDIVNMYRAADHRRAELVSGGRLFDVGQVPQSVWRYVQ. 0 12.0 10.0 6.156366149342154E-9 3.078183074671077E-7 0.0
/home/xiaowen/c_project/proteomics_cpp/testcases/data/st_no_digestion.msalign 585 993 1330 118 15 8986.908391472656 8986.908391472656 7206 gi|16767013|ref|NP_462628.1| 50S ribosomal subunit protein L28 [Salmonella typhimurium LT2] 9101.921114163819 2 78 M.SRVCQVTGKRPVTGNNRSHALNATKRRFLPNLHSHRFWVE(SEKRFVTLR)[16.03]VSAKGMRIIDKKGIETVLSELRARGEKY. 1 19.0 17.0 8.932792581499377E-7 3.117044243314751E-7 0.0
/home/xiaowen/c_project/proteomics_cpp/testcases/data/st_no_digestion.msalign 4 376 507 89 9 5377.083522140625 5377.076475339355 7424 gi|16767124|ref|NP_462739.1| 50S ribosomal subunit protein L34 [Salmonella typhimurium LT2] 5377.076475339355 1 46 .MKRTFQPSVLKRNRSHGFRARMATKNGRQVLARRRAKGRARLTVSK. 0 12.0 11.0 1.5749392449105495E-7 3.149878489821099E-7 0.0
/home/xiaowen/c_project/proteomics_cpp/testcases/data/st_no_digestion.msalign 779 1196 1600 112 11 12995.442156679688 12995.41010494751 7524 gi|16767174|ref|NP_462789.1| putative transcriptional regulator [Salmonella typhimurium LT2] 13126.450601773682 2 112 M.AESFTTTNRYFDNKHYPRGFSRHGDFTIKEAQLLERHGHAFNDLDLGKREPVTEEEKLFVAVCRGEREPVTDAERVWSKYMTRIKRPKRFHTLSGGKPQVEGAEDYTEADD. 0 17.0 15.0 3.191483220273419E-7 3.191483220273419E-7 0.0
/home/xiaowen/c_project/proteomics_cpp/testcases/data/st_no_digestion.msalign 954 1379 1844 64 10 9300.796338007816 9300.796338007816 7154 gi|16766987|ref|NP_462602.1| glutaredoxin 3 [Salmonella typhimurium LT2] 9300.730608182374 1 83 .(M)[-2.01]ANIEIYTKATCPFCHRAKALLNSKGVSFQEIAIDGDAVKREE(MIKRSGRTTVPQIF)[2.08]IDAQHIGGCDDLYALDARGGLDPLLR. 2 21.0 21.0 1.5404282272526347E-8 3.2135279085688723E-7 0.0
/home/xiaowen/c_project/proteomics_cpp/testcases/data/st_no_digestion.msalign 936 1359 1818 31 7 7264.656912648437 7264.61311932129 6494 gi|16766657|ref|NP_462272.1| putative periplasmic protein [Salmonella typhimurium LT2] 9528.873335080567 23 88 A.AVHQVNAEQAQNLQPMGTISVSQIGSTPMDMRQEIVAKAEKAGANSYRIIELKEGDNWHATAELYK. 0 13.0 12.0 1.0142771435130028E-8 3.3471145735929094E-7 0.0
/home/xiaowen/c_project/proteomics_cpp/testcases/data/st_no_digestion.msalign 1055 1494 1998 178 15 11759.47479667578 11759.412664609374 6642 gi|16766730|ref|NP_462345.1| 30S ribosomal subunit protein S10 [Salmonella typhimurium LT2] 11759.412664609375 1 103 .MQNQRIRIRLKAFDHRLIDQSTAEIVETAKRTGAQVRGPIPLPTRKERFTVLISPHVNKDARDQYEIRTHKRLVDIVEPTEKTVDALMRLDLAAGVDVQISLG. 0 28.0 19.0 1.6869411305751457E-7 3.3738822611502914E-7 0.0
/home/xiaowen/c_project/proteomics_cpp/testcases/data/st_no_digestion.msalign 194 589 791 22 7 6250.612590578125 6250.607590578125 7204 gi|16767012|ref|NP_462627.1| 50S ribosomal subunit protein L33 [Salmonella typhimurium LT2] 6367.619703488769 2 55 M.(AKGIREKIK)[14.03]LVSSAGTGHFYTTTKNKRTKPEKLELKKFDPVVRQHVIYKEAKIK. 1 9.0 9.0 2.969016539635019E-6 3.604165748984334E-7 0.0
/home/xiaowen/c_project/proteomics_cpp/testcases/data/st_no_digestion.msalign 1381 1918 2563 75 15 11230.051093550781 11229.943952756348 2590 gi|16764690|ref|NP_460305.1| integration host factor alpha subunit [Salmonella typhimurium LT2] 11360.98444958252 2 99 M.ALTKAEMSEYLFDKLGLSKRDAKELVELFFEEIRRALENGEQVKLSGFGNFDLRDKNQRPGRNPKTGEDIPITARRVVTFRPGQKLKSRVENASPKEE. 0 12.0 11.0 3.7682010905381474E-7 3.7682010905381474E-7 0.0
/home/xiaowen/c_project/proteomics_cpp/testcases/data/st_no_digestion.msalign 332 732 982 47 10 7210.265708882812 7210.254739957275 2582 gi|16764686|ref|NP_460301.1| 50S ribosomal subunit protein L35 [Salmonella typhimurium LT2] 7341.295236783447 2 65 M.PKIKTVRGAAKRFKKTGKGGFKHKHANLRHILTKKATKRKRHLRPKAMVSKGDLGLVIACLPYA. 0 9.0 8.0 3.8080467364094595E-7 3.8080467364094595E-7 0.0
/home/xiaowen/c_project/proteomics_cpp/testcases/data/st_no_digestion.msalign 1119 1586 2120 72 9 9229.065585898436 9229.012678342287 5168 gi|16765991|ref|NP_461606.1| 30S ribosomal subunit protein S16 [Salmonella typhimurium LT2] 9229.012678342286 1 82 .MVTIRLARHGAKKRPFYQVVVTDSRNARNGRFIERVGFFNPIASEKEEGTRLDLDRIAHWVGQGATISDRVAALIKEVKKAA. 0 13.0 12.0 1.9070748213000867E-7 3.8141496426001734E-7 0.0
/home/xiaowen/c_project/proteomics_cpp/testcases/data/st_no_digestion.msalign 1883 2720 3632 66 13 9876.404442332032 9876.304434018555 736 gi|16763763|ref|NP_459378.1| putative cytoplasmic protein [Salmonella typhimurium LT2] 10106.413343625489 3 88 V.MKNLIAELLLKLAQKEEESKELVAQVEALEIIVTAMLRNMAQNEQEMLIRQVEGALEGVKPDASVPDHDTELLRQYVKKLLRHPRH. 0 17.0 11.0 2.136293348786375E-8 3.8453280278154747E-7 0.0
/home/xiaowen/c_project/proteomics_cpp/testcases/data/st_no_digestion.msalign 617 1026 1374 187 16 11527.333474437499 11527.3084744375 6614 gi|39546367|ref|NP_462331.2| 30S ribosomal subunit protein S14 [Salmonella typhimurium LT2] 11113.053682523194 1 96 .(MKAREVKRVALAD)[414.25]KYFAKRAELKAIISDVNATDEDRWNAVLKLQTLPRDSSPSRQRNRCRQTGRPHAFLRKFGLSRIKVREAAMRGEIPGLKKASW. 1 40.0 24.0 2.12040878879191E-9 3.881898049448892E-7 0.0
/home/xiaowen/c_project/proteomics_cpp/testcases/data/st_no_digestion.msalign 1237 1725 2306 96 17 11206.293621628909 11206.238477902834 6636 gi|16766727|ref|NP_462342.1| 50S ribosomal subunit protein L23 [Salmonella typhimurium LT2] 11206.238477902833 1 100 .MIREERLLKVLRAPHVSEKASTAMEKTNTIVLKVAKDATKAEIKAAVQKLFEVEVEVVNTLVVKGKVKRHGQRIGRRSDWKKAYVTLKEGQNLDFVGGAE. 0 16.0 12.0 1.970402053665828E-7 3.940804107331656E-7 0.0
/home/xiaowen/c_project/proteomics_cpp/testcases/data/st_no_digestion.msalign 1910 2781 3714 35 11 12215.557570648438 12215.557570648438 7986 gi|16767406|ref|NP_463021.1| 50S ribosomal subunit protein L7/L12 [Salmonella typhimurium LT2] 12291.470907407227 2 121 M.(SITKDQIIEA)[55.13]VSAMSVMDVVELISAMEEKFGVSAAAAVAVAAGPAEAAEEKTEFDVILKAAGANKVAVIKAVRGATGLGLKEAKDLVESAPAALKEGVSKDDAEALKKSLEEAGAEVEVK. 1 17.0 12.0 1.606924278372176E-6 4.024017391583078E-7 0.0
/home/xiaowen/c_project/proteomics_cpp/testcases/data/st_no_digestion.msalign 620 1029 1378 178 17 11527.352199414065 11527.312199414064 6614 gi|39546367|ref|NP_462331.2| 30S ribosomal subunit protein S14 [Salmonella typhimurium LT2] 11113.053682523194 2 96 M.KA(REVKRVALA)[545.30]DKYFAKRAELKAIISDVNATDEDRWNAVLKLQTLPRDSSPSRQRNRCRQTGRPHAFLRKFGLSRIKVREAAMRGEIPGLKKASW. 1 28.0 21.0 2.2203296240922749E-7 4.104465231222399E-7 0.0
/home/xiaowen/c_project/proteomics_cpp/testcases/data/st_no_digestion.msalign 10 382 515 75 6 4548.516011195313 4548.516011195313 6598 gi|16766708|ref|NP_462323.1| 50S ribosomal subunit protein X [Salmonella typhimurium LT2] 4532.514040189209 1 38 .(MKVRAS)[42.01](VKKLCRNCKIVKRD)[-26.01]GVIRVICSAEPKHKQRQG. 1 16.0 14.0 2.936164701567211E-6 4.152689877103218E-7 0.0
/home/xiaowen/c_project/proteomics_cpp/testcases/data/st_no_digestion.msalign 456 863 1156 16 11 7977.960023304687 7977.960023304687 7898 gi|16767362|ref|NP_462977.1| 50S ribosomal subunit protein L31 [Salmonella typhimurium LT2] 7941.9762403540035 1 70 .MKKGIHPNYVEITA(TCSCGNVIKTHSTVGHDLNLDVCGKCH)[35.98]PFFTGKQRVVDTGGRVERFNKRFSIPGSK. 1 9.0 8.0 3.178099616072172E-6 4.382252334845537E-7 0.0
/home/xiaowen/c_project/proteomics_cpp/testcases/data/st_no_digestion.msalign 1063 1504 2011 166 8 11759.445345375 11759.412664609375 6642 gi|16766730|ref|NP_462345.1| 30S ribosomal subunit protein S10 [Salmonella typhimurium LT2] 11759.412664609375 1 103 .MQNQRIRIRLKAFDHRLIDQSTAEIVETAKRTGAQVRGPIPLPTRKERFTVLISPHVNKDARDQYEIRTHKRLVDIVEPTEKTVDALMRLDLAAGVDVQISLG. 0 20.0 18.0 2.2052480496462105E-7 4.410496099292421E-7 0.0
/home/xiaowen/c_project/proteomics_cpp/testcases/data/st_no_digestion.msalign 721 1136 1520 90 6 6509.643465625 6509.614042478028 6604 gi|16766711|ref|NP_462326.1| 50S ribosomal subunit protein L30 [Salmonella typhimurium LT2] 6509.614042478027 1 59 .MAKTIKITQTRSAIGRLPKHKATLLGLGLRRIGHTVEREDTPAVRGMVNAVSFMVKVEE. 0 16.0 12.0 2.2822048985917338E-7 4.5644097971834676E-7 0.0
/home/xiaowen/c_project/proteomics_cpp/testcases/data/st_no_digestion.msalign 1136 1609 2151 19 13 10818.43326585547 10818.344553189698 6004 gi|16766412|ref|NP_462027.1| putative cytoplasmic protein [Salmonella typhimurium LT2] 10949.38505001587 2 91 M.SRTIFCTYLQRDAEGQDFQLYPGELGKRIYNEISKDAWAQWQHKQTMLINEKKLNMMNAEHRKLLEQEMVSFLFEGKDVHIEGYTPEDKK. 0 8.0 7.0 4.858502131649474E-7 4.858502131649474E-7 0.0
/home/xiaowen/c_project/proteomics_cpp/testcases/data/st_no_digestion.msalign 164 551 740 104 9 6265.601571617189 6265.601571617189 7204 gi|16767012|ref|NP_462627.1| 50S ribosomal subunit protein L33 [Salmonella typhimurium LT2] 6367.619703488769 2 55 M.(A)[29.02]KGIREKIKLVSSAGTGHFYTTTKNKRTKPEKLELKKFDPVVRQHVIYKEAKIK. 1 15.0 13.0 7.005046534528787E-6 5.00774466807287E-7 0.0
/home/xiaowen/c_project/proteomics_cpp/testcases/data/st_no_digestion.msalign 713 1128 1510 54 11 6509.641997734375 6509.614042478027 6604 gi|16766711|ref|NP_462326.1| 50S ribosomal subunit protein L30 [Salmonella typhimurium LT2] 6509.614042478027 1 59 .MAKTIKITQTRSAIGRLPKHKATLLGLGLRRIGHTVEREDTPAVRGMVNAVSFMVKVEE. 0 13.0 10.0 2.643869449865916E-7 5.287738899731832E-7 0.0
/home/xiaowen/c_project/proteomics_cpp/testcases/data/st_no_digestion.msalign 527 934 1251 105 11 6394.599992105468 6394.599992105468 6604 gi|16766711|ref|NP_462326.1| 50S ribosomal subunit protein L30 [Salmonella typhimurium LT2] 6509.614042478027 2 59 M.AKTIKITQTRSAIGRLPKHKATLLGLGLRRIGHTVERED(TPAVRGM)[16.03]VNAVSFMVKVEE. 1 31.0 17.0 2.1031376342797616E-6 5.306081187403069E-7 0.0
/home/xiaowen/c_project/proteomics_cpp/testcases/data/st_no_digestion.msalign 1236 1724 2304 179 19 11206.303239550783 11206.238477902833 6636 gi|16766727|ref|NP_462342.1| 50S ribosomal subunit protein L23 [Salmonella typhimurium LT2] 11206.238477902833 1 100 .MIREERLLKVLRAPHVSEKASTAMEKTNTIVLKVAKDATKAEIKAAVQKLFEVEVEVVNTLVVKGKVKRHGQRIGRRSDWKKAYVTLKEGQNLDFVGGAE. 0 28.0 15.0 2.68383448252165E-7 5.3676689650433E-7 0.0
/home/xiaowen/c_project/proteomics_cpp/testcases/data/st_no_digestion.msalign 1476 2043 2730 41 12 9387.911537750002 9387.79499645752 3320 gi|16765059|ref|NP_460674.1| putative cytoplasmic protein [Salmonella typhimurium LT2] 9387.79499645752 1 83 .MHKETQPIDRETLLLEANKIIREHEDTMAGIVATGVTQRNGVLVFSGDYFLDEQGLPTPKSTAVFNMFKHLAHVLSEKYHLVD. 0 8.0 8.0 2.7615574134602886E-7 5.523114826920577E-7 0.0
/home/xiaowen/c_project/proteomics_cpp/testcases/data/st_no_digestion.msalign 1467 2023 2703 34 14 15292.621965312499 15292.556965312499 8448 gi|16767637|ref|NP_463252.1| 30S ribosomal subunit protein S6 [Salmonella typhimurium LT2] 15163.423299985352 1 131 .MRHYEIVFMVHPDQSEQVPGMIERYSAAITGAEGKIHRLEDWGRRQLAYPINKLHKAHYVLMNVEA(P)[129.13]QEVIDELETTFRFNDAVIRSMVMRTKHAVTEASPMVKAKDERRERRDDFANETADDAEAGDSEE. 1 17.0 14.0 1.006920337734426E-6 6.014446502379238E-7 0.0
/home/xiaowen/c_project/proteomics_cpp/testcases/data/st_no_digestion.msalign 1782 2483 3316 75 8 8095.18553965625 8095.18553965625 4302 gi|16765556|ref|NP_461171.1| putative cytoplasmic protein [Salmonella typhimurium LT2] 8226.193906979981 2 75 M.PQLSRYSDEHVEQL(LSELLSVLEKHKAPTDLSLMVL)[-.93]GNMVTNLINTSVA(PAQRQAIANSFARALQSS)[.97]ISEDNAH. 2 19.0 19.0 5.231583294445255E-8 6.130471655731084E-7 0.0
/home/xiaowen/c_project/proteomics_cpp/testcases/data/st_no_digestion.msalign 1708 2353 3143 39 15 11231.859260054687 11231.859260054687 6542 gi|16766680|ref|NP_462295.1| factor-for-inversion stimulation protein [Salmonella typhimurium LT2] 11232.765684323731 2 98 M.FEQRVNSDVLTVSTVNSQDQVTQKPLRDSVKQALKNYFAQLNGQDVNDLYEL(V)[130.13]LAEVEQPLLDMVMQYTRGNQTRAALMMGINRGTLRKKLKKYGMN. 1 17.0 11.0 1.6397431716875794E-6 6.287358787145626E-7 0.0
/home/xiaowen/c_project/proteomics_cpp/testcases/data/st_no_digestion.msalign 812 1229 1644 59 13 9517.376655859378 9517.341655859376 86 gi|16763433|ref|NP_459048.1| 30S ribosomal subunit protein S20 [Salmonella typhimurium LT2] 9649.330160336915 2 87 M.(ANIKS)[42.01](AKKRAVQSEKARKHNASRRS)[-42.96]MMRTFIKKVYAAIEAGDKAAALKAFNEMQPIVDRQAAKGLIHKNKAARHKANLTAQINKLA. 1 11.0 11.0 5.036490726639364E-6 6.596328378495315E-7 0.0
/home/xiaowen/c_project/proteomics_cpp/testcases/data/st_no_digestion.msalign 1395 1934 2584 61 21 14957.389698828129 14957.307417111817 6602 gi|16766710|ref|NP_462325.1| 50S ribosomal subunit protein L15 [Salmonella typhimurium LT2] 14957.307417111817 1 144 .MRLNTLSPAEGSKKAGKRLGRGIGSGLGKTGGRGHKGQKSRSGGGVRRGFEGGQMPLYRRLPKFGFTSRKAAITAEVRLSDLAKVEGGVVDLNTLKAANIIGIQIEFAKVILAGEVTTPVTVRGLRVTKGARAAIEAAGGKIEE. 0 9.0 9.0 3.3234433480850276E-7 6.646886696170055E-7 0.0
/home/xiaowen/c_project/proteomics_cpp/testcases/data/st_no_digestion.msalign 1477 2044 2731 38 12 9387.911537750002 9387.911537750002 3320 gi|16765059|ref|NP_460674.1| putative cytoplasmic protein [Salmonella typhimurium LT2] 9387.79499645752 1 83 .MHKETQPIDRETLLLEANKIIREHEDTMAG(IVA)[-18.99]TGVTQRNGVLVFSGD(Y)[19.11]FLDEQGLPTPKSTAVFNMFKHLAHVLSEKYHLVD. 2 17.0 14.0 4.153761937150242E-8 6.683922864545658E-7 0.0
/home/xiaowen/c_project/proteomics_cpp/testcases/data/st_no_digestion.msalign 1880 2713 3623 60 13 9875.40627338672 9875.40627338672 736 gi|16763763|ref|NP_459378.1| putative cytoplasmic protein [Salmonella typhimurium LT2] 10106.413343625489 3 88 V.MKNLIAELLLKLAQKEEESKELVAQVEAL(E)[17.19]IIVTAMLRNMAQNE(Q)[-18.09]EMLIRQVEGALEGVKPDASVPDHDTELLRQYVKKLLRHPRH. 2 25.0 18.0 3.055462912765547E-10 6.99755779199657E-7 0.0
/home/xiaowen/c_project/proteomics_cpp/testcases/data/st_no_digestion.msalign 360 762 1022 141 15 9044.940932210939 9044.898699002684 6376 gi|16766598|ref|NP_462213.1| 50S ribosomal subunit protein L27 [Salmonella typhimurium LT2] 9175.939195828858 2 85 M.AHKKAGGSTRNGRDSEAKRLGVKRFGGEAVLAGSIIVRQRGTKFHAGTNVGCGRDHTLFAKADGKVKFEVKGPKNRKYISIVAE. 0 21.0 15.0 7.444902036255001E-7 7.444902036255001E-7 0.0
/home/xiaowen/c_project/proteomics_cpp/testcases/data/st_no_digestion.msalign 1424 1968 2630 36 15 16294.830512960938 16294.684805112307 1592 gi|16764195|ref|NP_459810.1| outer membrane protease precursor [Salmonella typhimurium LT2] 18539.917421536866 24 171 A.ATSTVTGGYAQSDAQGVANKMSGFNLKYRYEQDDNPLGVIGSFTYTEKDRTNGAGDYNKGQYYGITAGPAYRLNDWASIYGVVGVGYGKFQTTDYPTYKHDTSDYGFSYGAGLQFNPMENVALDFSYEQSRIRSVDVGTWIAGVGYRF. 0 9.0 9.0 3.7456251360289585E-8 7.491250272057917E-7 0.0
/home/xiaowen/c_project/proteomics_cpp/testcases/data/st_no_digestion.msalign 683 1098 1470 96 7 6378.603956621095 6378.573545651854 6604 gi|16766711|ref|NP_462326.1| 50S ribosomal subunit protein L30 [Salmonella typhimurium LT2] 6509.614042478027 2 59 M.AKTIKITQTRSAIGRLPKHKATLLGLGLRRIGHTVEREDTPAVRGMVNAVSFMVKVEE. 0 20.0 14.0 7.560166051318643E-7 7.560166051318643E-7 0.0
/home/xiaowen/c_project/proteomics_cpp/testcases/data/st_no_digestion.msalign 548 955 1279 89 6 6394.603230015624 6394.633230015624 6604 gi|16766711|ref|NP_462326.1| 50S ribosomal subunit protein L30 [Salmonella typhimurium LT2] 6509.614042478027 2 59 M.AKTIKITQTRSAIGRLPKHKATLLGLGLRRIGHTVEREDTPAVRGMVNAVSF(M)[16.06]VKVEE. 1 21.0 15.0 3.0140984385956807E-6 7.618355428435775E-7 0.0
/home/xiaowen/c_project/proteomics_cpp/testcases/data/st_no_digestion.msalign 783 1200 1606 46 9 6537.6422475078125 6537.6422475078125 6604 gi|16766711|ref|NP_462326.1| 50S ribosomal subunit protein L30 [Salmonella typhimurium LT2] 6509.614042478027 1 59 .(MAKTIKITQTRSAIGRLPKHKATLLGLGLRRIGHTVERED)[28.03]TPAVRGMVNAVSFMVKVEE. 1 20.0 13.0 1.2575865603009921E-5 7.686903479372991E-7 0.0
/home/xiaowen/c_project/proteomics_cpp/testcases/data/st_no_digestion.msalign 1796 2531 3380 100 7 8795.478682398438 8795.422834592286 816 gi|16763804|ref|NP_459419.1| exonuclease VII small subunit [Salmonella typhimurium LT2] 8926.463331418458 2 80 M.PKKNEAPASFETALSELEHIVTRLESGDLPLEDALNEFERGVQLARQGQAKLQQAEQRVQILLSDNEEASPEPFIADNE. 0 16.0 15.0 8.086625761422976E-7 8.086625761422976E-7 0.0
/home/xiaowen/c_project/proteomics_cpp/testcases/data/st_no_digestion.msalign 596 1004 1344 166 14 9965.901356757813 9965.796356757814 2906 gi|16764848|ref|NP_460463.1| putative periplasmic protein [Salmonella typhimurium LT2] 13009.40887661499 2 113 M.NNTLSK(RLCLTAMLTLAAVVYTTSAFAETSKLVI)[-2912.57]ESGDSAQSRQEAAMEKEQWNDTRSLRQKVNTRAEKEWDKADAAFDNRDKCEQSANINAYWEPNTLRCLDRRTGRVITP. 1 32.0 22.0 9.716748049997814E-8 8.115723240767657E-7 0.0
/home/xiaowen/c_project/proteomics_cpp/testcases/data/st_no_digestion.msalign 1051 1487 1988 114 18 12991.27940827344 12991.187040524905 5162 gi|16765988|ref|NP_461603.1| 50S ribosomal subunit protein L19 [Salmonella typhimurium LT2] 13122.227537351075 2 115 M.SNIIKQLEQEQMKQNVPSFRPGDTVEVKVWVVEGTKKRLQAFEGVVIAIRNRGLHSAFTVRKISNGEGVERVFQTHSPVVDSIAVKRRGAVRKAKLYYLRERTGKAARIKERLN. 0 13.0 12.0 8.27440127267736E-7 8.27440127267736E-7 0.0
/home/xiaowen/c_project/proteomics_cpp/testcases/data/st_no_digestion.msalign 1907 2768 3696 46 14 12201.582487578125 12201.582487578125 7986 gi|16767406|ref|NP_463021.1| 50S ribosomal subunit protein L7/L12 [Salmonella typhimurium LT2] 12291.470907407227 2 121 M.(SITKDQI)[42.01]IEAVSAMSVMDVVELISAMEEKFGVSAAAAVAVA(A)[-.86]GPAEAAEEKTEFDVILKAAGANKVAVIKAVRGATGLGLKEAKDLVESAPAALKEGVSKDDAEALKKSLEEAGAEVEVK. 1 14.0 12.0 3.0695257287577613E-6 8.465489921333818E-7 0.0
/home/xiaowen/c_project/proteomics_cpp/testcases/data/st_no_digestion.msalign 660 1074 1438 149 17 8969.941099683596 8969.941099683596 7206 gi|16767013|ref|NP_462628.1| 50S ribosomal subunit protein L28 [Salmonella typhimurium LT2] 9101.921114163819 2 78 M.SRVCQVTGKRPVTGNNRSHALNATKRRFLPNLHSHRFWVESEKRFVTLRVSAKGMRIIDKK(GIE)[-.94]TVLSELRARGEKY. 1 20.0 16.0 5.794180243704627E-6 8.893548441000755E-7 0.0
/home/xiaowen/c_project/proteomics_cpp/testcases/data/st_no_digestion.msalign 1370 1902 2542 36 19 17503.405541484375 17503.297346311036 6606 gi|16766712|ref|NP_462327.1| 30S ribosomal subunit protein S5 [Salmonella typhimurium LT2] 17592.32727642578 2 167 M.(A)[42.01]HIEKQAGELQEKLIAVNRVSKTVKGGRIFSFTALTVVGDGNGRVGFGYGKAREVPAAIQKAMEKARRNMINVALNNGTLQHPVKGVHTGSRVFMQPASEGTGIIAGGAMRAVLEVAGVHNVLAKAYGSTNPINVVRATIDGLENMNSPEMVAAKRGKSVEEILGK. 0 8.0 7.0 8.935916684577766E-7 8.935916684577766E-7 0.0
/home/xiaowen/c_project/proteomics_cpp/testcases/data/st_no_digestion.msalign 434 841 1127 75 13 7825.930015003906 7825.930015003906 7898 gi|16767362|ref|NP_462977.1| 50S ribosomal subunit protein L31 [Salmonella typhimurium LT2] 7941.9762403540035 1 70 .MKKGIHPNYVEITA(TCSCGNVIKTHSTVGHDLNLDVCGKCH)[-116.05]PFFTGKQRVVDTGGRVERFNKRFSIPGSK. 1 20.0 15.0 4.2506732988349154E-6 8.971855794564755E-7 0.0
/home/xiaowen/c_project/proteomics_cpp/testcases/data/st_no_digestion.msalign 1908 2769 3698 29 13 12202.558940824221 12202.44097729248 7986 gi|16767406|ref|NP_463021.1| 50S ribosomal subunit protein L7/L12 [Salmonella typhimurium LT2] 12291.470907407227 2 121 M.(S)[42.01]ITKDQIIEAVSAMSVMDVVELISAMEEKFGVSAAAAVAVAAGPAEAAEEKTEFDVILKAAGANKVAVIKAVRGATGLGLKEAKDLVESAPAALKEGVSKDDAEALKKSLEEAGAEVEVK. 0 12.0 8.0 9.316536499912681E-7 9.316536499912681E-7 0.0
/home/xiaowen/c_project/proteomics_cpp/testcases/data/st_no_digestion.msalign 329 729 978 23 13 7210.284957542971 7210.254739957276 2582 gi|16764686|ref|NP_460301.1| 50S ribosomal subunit protein L35 [Salmonella typhimurium LT2] 7341.295236783447 2 65 M.PKIKTVRGAAKRFKKTGKGGFKHKHANLRHILTKKATKRKRHLRPKAMVSKGDLGLVIACLPYA. 0 7.0 5.0 9.458271914871017E-7 9.458271914871017E-7 0.0
/home/xiaowen/c_project/proteomics_cpp/testcases/data/st_no_digestion.msalign 1373 1905 2546 125 17 17502.463062234372 17502.288062234376 6606 gi|16766712|ref|NP_462327.1| 30S ribosomal subunit protein S5 [Salmonella typhimurium LT2] 17592.32727642578 1 167 .MAHIEKQAGELQEKLIAVNRVSKTVKGGR(IFSFTAL)[-90.04]TVVGDGNGRVGFGYGKAREVPAAIQKAMEKARRNMINVALNNGTLQHPVKGVHTGSRVFMQPASEGTGIIAGGAMRAVLEVAGVHNVLAKAYGSTNPINVVRATIDGLENMNSPEMVAAKRGKSVEEILGK. 1 20.0 18.0 1.4610250251813441E-6 9.954079257191001E-7 0.0
/home/xiaowen/c_project/proteomics_cpp/testcases/data/st_no_digestion.msalign 1194 1674 2238 21 8 7272.031106375 7272.031106375 6624 gi|16766721|ref|NP_462336.1| 50S ribosomal subunit protein L29 [Salmonella typhimurium LT2] 7255.987646298828 1 63 .MKAKELREKSVEEL(NTELLNLLREQFNLRMQAASGQLQQS)[16.04]HLLKQVRRDVARVKTLLTEKAGA. 1 9.0 9.0 2.5457612678969965E-6 1.0230188798771263E-6 0.0
/home/xiaowen/c_project/proteomics_cpp/testcases/data/st_no_digestion.msalign 1140 1613 2156 64 15 12762.052158765624 12761.967558103028 6608 gi|16766713|ref|NP_462328.1| 50S ribosomal subunit protein L18 [Salmonella typhimurium LT2] 12761.967558103028 1 117 .MDKKSARIRRATRARRKLKELGATRLVVHRTPRHIYAQVIAPNGSEVLVAASTVEKAIAEQLKYTGNKDAAAAVGKAVAERALEKGIKDVSFDRSGFQYHGRVQALADAAREAGLQF. 0 12.0 10.0 5.501332462552775E-7 1.100266492510555E-6 0.0
/home/xiaowen/c_project/proteomics_cpp/testcases/data/st_no_digestion.msalign 639 1048 1403 27 6 3656.9929979765634 3656.971136289063 3568 gi|16765185|ref|NP_460800.1| heat shock protein [Salmonella typhimurium LT2] 31915.606332974854 262 293 C.INGKSKSLSELFMTHPPLDKRIEALRSGEYLK. 0 8.0 7.0 5.2985044296697386E-8 1.1126859302306451E-6 0.0
/home/xiaowen/c_project/proteomics_cpp/testcases/data/st_no_digestion.msalign 1720 2377 3175 19 11 11782.18021024219 11782.113416867676 7558 gi|16767191|ref|NP_462806.1| thioredoxin 1 [Salmonella typhimurium LT2] 11913.153913693848 2 109 M.SDKIIHLTDDSFDTDVLKADGAILVDFWAEWCGPCKMIAPILDEIADEYQGKLTVAKLNIDQNPGTAPKYGIRGIPTLLLFKNGEVAATKVGALSKGQLKEFLDANLA. 0 6.0 6.0 1.2571107282457329E-6 1.2571107282457329E-6 0.0
/home/xiaowen/c_project/proteomics_cpp/testcases/data/st_no_digestion.msalign 1727 2384 3184 66 15 11782.236616496093 11782.113416867676 7558 gi|16767191|ref|NP_462806.1| thioredoxin 1 [Salmonella typhimurium LT2] 11913.153913693848 2 109 M.SDKIIHLTDDSFDTDVLKADGAILVDFWAEWCGPCKMIAPILDEIADEYQGKLTVAKLNIDQNPGTAPKYGIRGIPTLLLFKNGEVAATKVGALSKGQLKEFLDANLA. 0 10.0 10.0 1.2861537009237816E-6 1.2861537009237816E-6 0.0
/home/xiaowen/c_project/proteomics_cpp/testcases/data/st_no_digestion.msalign 1837 2622 3502 11 11 12160.538772820317 12160.430410581057 7986 gi|16767406|ref|NP_463021.1| 50S ribosomal subunit protein L7/L12 [Salmonella typhimurium LT2] 12291.470907407227 2 121 M.SITKDQIIEAVSAMSVMDVVELISAMEEKFGVSAAAAVAVAAGPAEAAEEKTEFDVILKAAGANKVAVIKAVRGATGLGLKEAKDLVESAPAALKEGVSKDDAEALKKSLEEAGAEVEVK. 0 8.0 7.0 1.3471232635817496E-6 1.3471232635817496E-6 0.0
/home/xiaowen/c_project/proteomics_cpp/testcases/data/st_no_digestion.msalign 363 765 1026 134 14 9044.944546101562 9044.898699002686 6376 gi|16766598|ref|NP_462213.1| 50S ribosomal subunit protein L27 [Salmonella typhimurium LT2] 9175.939195828858 2 85 M.AHKKAGGSTRNGRDSEAKRLGVKRFGGEAVLAGSIIVRQRGTKFHAGTNVGCGRDHTLFAKADGKVKFEVKGPKNRKYISIVAE. 0 20.0 15.0 1.3525909684164707E-6 1.3525909684164707E-6 0.0
/home/xiaowen/c_project/proteomics_cpp/testcases/data/st_no_digestion.msalign 1151 1624 2171 136 16 12762.051474562499 12761.967558103028 6608 gi|16766713|ref|NP_462328.1| 50S ribosomal subunit protein L18 [Salmonella typhimurium LT2] 12761.967558103028 1 117 .MDKKSARIRRATRARRKLKELGATRLVVHRTPRHIYAQVIAPNGSEVLVAASTVEKAIAEQLKYTGNKDAAAAVGKAVAERALEKGIKDVSFDRSGFQYHGRVQALADAAREAGLQF. 0 19.0 14.0 6.83025125929039E-7 1.366050251858078E-6 0.0
/home/xiaowen/c_project/proteomics_cpp/testcases/data/st_no_digestion.msalign 1246 1735 2319 32 8 6478.510741562499 6478.460607724609 3498 gi|16765150|ref|NP_460765.1| putative cytoplasmic protein [Salmonella typhimurium LT2] 6478.460607724609 1 57 .MNSEELTHKAEEEIAALISKKVAELRKKTGQEVSEIEFAPRETMKGLEGYHVKIKLL. 0 10.0 10.0 6.891411466066301E-7 1.3782822932132603E-6 0.0
/home/xiaowen/c_project/proteomics_cpp/testcases/data/st_no_digestion.msalign 1307 1806 2414 103 16 10613.600743875 10613.600743875 1892 gi|16764342|ref|NP_459957.1| integration host factor beta subunit [Salmonella typhimurium LT2] 10614.512960629883 1 94 .MTKSELIERLATQQSHIPA(K)[-.91]AVEDAVKEMLEHMASTLAQGERIEIRGFGSFSLHYRAPRTGRNPKTGDKVELEGKYVPHFKPGKELRDRANIYG. 1 17.0 15.0 8.034748185620778E-6 1.392906359830242E-6 0.0
/home/xiaowen/c_project/proteomics_cpp/testcases/data/st_no_digestion.msalign 14 386 520 87 11 5377.0877384511705 5377.076475339355 7424 gi|16767124|ref|NP_462739.1| 50S ribosomal subunit protein L34 [Salmonella typhimurium LT2] 5377.076475339355 1 46 .MKRTFQPSVLKRNRSHGFRARMATKNGRQVLARRRAKGRARLTVSK. 0 11.0 10.0 7.005473360307385E-7 1.401094672061477E-6 0.0
/home/xiaowen/c_project/proteomics_cpp/testcases/data/st_no_digestion.msalign 724 1139 1524 59 12 6509.6459522031255 6509.614042478027 6604 gi|16766711|ref|NP_462326.1| 50S ribosomal subunit protein L30 [Salmonella typhimurium LT2] 6509.614042478027 1 59 .MAKTIKITQTRSAIGRLPKHKATLLGLGLRRIGHTVEREDTPAVRGMVNAVSFMVKVEE. 0 14.0 9.0 7.022871957510413E-7 1.4045743915020826E-6 0.0
/home/xiaowen/c_project/proteomics_cpp/testcases/data/st_no_digestion.msalign 953 1377 1842 88 10 9300.796338007816 9300.730608182374 7154 gi|16766987|ref|NP_462602.1| glutaredoxin 3 [Salmonella typhimurium LT2] 9300.730608182374 1 83 .MANIEIYTKATCPFCHRAKALLNSKGVSFQEIAIDGDAVKREEMIKRSGRTTVPQIFIDAQHIGGCDDLYALDARGGLDPLLR. 0 16.0 15.0 7.268298901048616E-7 1.4536597802097232E-6 0.0
/home/xiaowen/c_project/proteomics_cpp/testcases/data/st_no_digestion.msalign 732 1147 1535 149 17 9518.34248594141 9518.289663510743 86 gi|16763433|ref|NP_459048.1| 30S ribosomal subunit protein S20 [Salmonella typhimurium LT2] 9649.330160336915 2 87 M.ANIKSAKKRAVQSEKARKHNASRRSMMRTFIKKVYAAIEAGDKAAALKAFNEMQPIVDRQAAKGLIHKNKAARHKANLTAQINKLA. 0 18.0 14.0 1.4585145310623103E-6 1.4585145310623103E-6 0.0
/home/xiaowen/c_project/proteomics_cpp/testcases/data/st_no_digestion.msalign 1359 1888 2523 25 13 9516.207893652347 9516.207893652347 8022 gi|16767424|ref|NP_463039.1| DNA-binding protein HU-alpha [Salmonella typhimurium LT2] 9515.17277355713 1 90 .MNKTQLIDVIADKAELSKTQAKAALESTLAAITESLKEGD(A)[1.04]VQLVGFGTFKVNHRAERTGRNPQTGKEIKIAAANVPAFVSGKALKDAVK. 1 9.0 8.0 9.88776520964637E-6 1.4618265722227885E-6 0.0
/home/xiaowen/c_project/proteomics_cpp/testcases/data/st_no_digestion.msalign 1643 2269 3031 74 11 9261.102626605472 9261.102626605472 870 gi|16763832|ref|NP_459447.1| DNA-binding protein HU-beta [Salmonella typhimurium LT2] 9234.010030942383 1 90 .(MNKSQLIEKI)[27.09]AAGADISKAAAGRALDAIIASVTESLKEGDDVALVGFGTFAVKERAARTGRNPQTGKEITIAAAKVPSFRAGKALKDAVN. 1 14.0 13.0 1.3389077181466044E-5 1.4667809271830782E-6 0.0
/home/xiaowen/c_project/proteomics_cpp/testcases/data/st_no_digestion.msalign 1018 1448 1936 25 9 8113.319071761719 8113.281858640137 1836 gi|16764314|ref|NP_459929.1| protein chain initiation factor IF-1 [Salmonella typhimurium LT2] 8244.32235546631 2 72 M.AKEDNIEMQGTVLETLPNTMFRVELENGHVVTAHISGKMRKNYIRILTGDKVTVELTPYDLSKGRIVFRSR. 0 10.0 8.0 7.975698007768091E-7 1.5951396015536182E-6 0.0
/home/xiaowen/c_project/proteomics_cpp/testcases/data/st_no_digestion.msalign 880 1301 1740 66 14 10060.501321343749 10060.428564267579 6342 gi|16766581|ref|NP_462196.1| 30S ribosomal subunit protein S15 [Salmonella typhimurium LT2] 10191.46906109375 2 89 M.SLSTEATAKIVSEFGRDANDTGSTDVQVALLTAQINHLQGHFAEHKKDHHSRRGLLRMVSQRRKLLDYLKRKDVARYTALIERLGLRR. 0 12.0 10.0 1.6843010064703358E-6 1.6843010064703358E-6 0.0
/home/xiaowen/c_project/proteomics_cpp/testcases/data/st_no_digestion.msalign 1663 2290 3059 196 15 12106.086951328125 12105.95568295044 938 gi|16763865|ref|NP_459480.1| putative cytoplasmic protein [Salmonella typhimurium LT2] 12063.945116239014 1 109 .(M)[42.01]FGKGGLGNLMKQAQQMQEKMQKMQEEIAQLEVTGESGAGLVKVTINGAHNCRRVEIDPSLLEDDKEMLEDLVAAAFNDAARRIEETQKEKMASVSSGMQLPPGFKMPF. 0 25.0 19.0 8.551657504368956E-7 1.7103315008737912E-6 0.0
/home/xiaowen/c_project/proteomics_cpp/testcases/data/st_no_digestion.msalign 1069 1520 2032 27 8 7330.78061909375 7330.78061909375 1216 gi|16764006|ref|NP_459621.1| negative regulator [Salmonella typhimurium LT2] 7446.7773954443355 2 69 M.SKIKGNVKWFNESKGFGFITPEDGSKDVFVHFSAIQTNGFKTLAEGQRVEFEITNGAKGPSAANVT(AL)[15.04]. 1 15.0 11.0 1.1833922114618964E-5 1.8016038578425434E-6 0.0
/home/xiaowen/c_project/proteomics_cpp/testcases/data/st_no_digestion.msalign 715 1130 1512 46 16 10294.728744562499 10294.718744562499 6632 gi|16766725|ref|NP_462340.1| 30S ribosomal subunit protein S19 [Salmonella typhimurium LT2] 10409.699133115235 2 92 M.PRSLKKGPFIDLHLLKKVEKAVESGDKKPLRTWSRRSTIFPNMIGLTI(AVHNGRQHVPV)[16.06]FVSDEMVGHKLGEFAPTRTYRGHAADKKAKKK. 1 10.0 10.0 4.622618964390968E-6 1.8863407593903104E-6 0.0
/home/xiaowen/c_project/proteomics_cpp/testcases/data/st_no_digestion.msalign 1409 1951 2607 23 9 9113.802022058593 9113.737188535157 4692 gi|16765751|ref|NP_461366.1| phosphohistidinoprotein-hexose phosphotransferase [Salmonella typhimurium LT2] 9113.737188535157 1 85 .MFQQEVTITAPNGLHTRPAAQFVKEAKGFTSEITVTSNGKSASAKSLFKLQTLGLTQGTVVTISAEGEDEQKAVEHLVKLMAELE. 0 7.0 7.0 9.595129301429332E-7 1.9190258602858664E-6 0.0
/home/xiaowen/c_project/proteomics_cpp/testcases/data/st_no_digestion.msalign 1944 2888 3856 32 12 8966.764650093754 8966.694650093754 7662 gi|16767243|ref|NP_462858.1| Sec-independent protein secretion pathway component [Salmonella typhimurium LT2] 8938.698942380372 1 84 .(MGG)[28.00]ISIWQLLIVAVIVVLLFGTKKLGSIGSDLGASIKGFKKAMSDDDAKQDKTSQDADFTAKSIADKQGEAKKEDAKSQDKEQV. 1 15.0 12.0 1.4034071886178095E-5 1.932927624772626E-6 0.0
/home/xiaowen/c_project/proteomics_cpp/testcases/data/st_no_digestion.msalign 1772 2473 3303 12 9 8095.215800277344 8095.15341015381 4302 gi|16765556|ref|NP_461171.1| putative cytoplasmic protein [Salmonella typhimurium LT2] 8226.193906979981 2 75 M.PQLSRYSDEHVEQLLSELLSVLEKHKAPTDLSLMVLGNMVTNLINTSVAPAQRQAIANSFARALQSSISEDNAH. 0 7.0 5.0 2.0228212660656575E-6 2.0228212660656575E-6 0.0
/home/xiaowen/c_project/proteomics_cpp/testcases/data/st_no_digestion.msalign 1397 1936 2587 89 21 14955.408131445316 14955.223131445315 6602 gi|16766710|ref|NP_462325.1| 50S ribosomal subunit protein L15 [Salmonella typhimurium LT2] 14957.307417111817 1 144 .(MRLNTL)[-2.08]SPAEGSKKAGKRLGRGIGSGLGKTGGRGHKGQKSRSGGGVRRGFEGGQMPLYRRLPKFGFTSRKAAITAEVRLSDLAKVEGGVVDLNTLKAANIIGIQIEFAKVILAGEVTTPVTVRGLRVTKGARAAIEAAGGKIEE. 1 13.0 13.0 8.098021314844852E-6 2.0384035346291385E-6 0.0
/home/xiaowen/c_project/proteomics_cpp/testcases/data/st_no_digestion.msalign 1396 1935 2586 32 20 14957.390138890627 14957.307417111815 6602 gi|16766710|ref|NP_462325.1| 50S ribosomal subunit protein L15 [Salmonella typhimurium LT2] 14957.307417111817 1 144 .MRLNTLSPAEGSKKAGKRLGRGIGSGLGKTGGRGHKGQKSRSGGGVRRGFEGGQMPLYRRLPKFGFTSRKAAITAEVRLSDLAKVEGGVVDLNTLKAANIIGIQIEFAKVILAGEVTTPVTVRGLRVTKGARAAIEAAGGKIEE. 0 7.0 7.0 1.0589808383237469E-6 2.1179616766474938E-6 0.0
/home/xiaowen/c_project/proteomics_cpp/testcases/data/st_no_digestion.msalign 666 1081 1447 149 17 8970.920591871096 8970.880617337647 7206 gi|16767013|ref|NP_462628.1| 50S ribosomal subunit protein L28 [Salmonella typhimurium LT2] 9101.921114163819 2 78 M.SRVCQVTGKRPVTGNNRSHALNATKRRFLPNLHSHRFWVESEKRFVTLRVSAKGMRIIDKKGIETVLSELRARGEKY. 0 17.0 13.0 2.166322646303902E-6 2.166322646303902E-6 0.0
/home/xiaowen/c_project/proteomics_cpp/testcases/data/st_no_digestion.msalign 199 594 798 41 7 3734.9746696132815 3734.9691183142086 7898 gi|16767362|ref|NP_462977.1| 50S ribosomal subunit protein L31 [Salmonella typhimurium LT2] 7941.9762403540035 39 70 G.KCHPFFTGKQRVVDTGGRVERFNKRFSIPGSK. 0 12.0 9.0 8.024377396874719E-8 2.166581897156174E-6 0.0
/home/xiaowen/c_project/proteomics_cpp/testcases/data/st_no_digestion.msalign 1356 1877 2508 21 9 9169.596610757812 9169.548193173829 6908 gi|16766864|ref|NP_462479.1| putative RNA-binding protein [Salmonella typhimurium LT2] 9300.58869 2 81 M.SDLFSSPDHTLDALGLRCPEPVMMVRKTVRNMQTGETLLIIADDPATTRDIPGFCTFMEHDLLAQETEGLPYRYLLRKAH. 0 5.0 5.0 1.134744155315664E-6 2.269488310631328E-6 0.0
/home/xiaowen/c_project/proteomics_cpp/testcases/data/st_no_digestion.msalign 349 750 1006 116 13 8420.74546016797 8420.707170682374 6198 gi|16766509|ref|NP_462124.1| 30S ribosomal subunit protein S21 [Salmonella typhimurium LT2] 8551.747667508545 2 71 M.PVIKVRENEPFDVALRRFKRSCEKAGVLAEVRRREFYEKPTTERKRAKASAVKRHAKKLARENARRTRLY. 0 11.0 10.0 2.290751008070422E-6 2.290751008070422E-6 0.0
/home/xiaowen/c_project/proteomics_cpp/testcases/data/st_no_digestion.msalign 1371 1903 2543 89 22 17503.416672468757 17503.297346311036 6606 gi|16766712|ref|NP_462327.1| 30S ribosomal subunit protein S5 [Salmonella typhimurium LT2] 17592.32727642578 2 167 M.(A)[42.01]HIEKQAGELQEKLIAVNRVSKTVKGGRIFSFTALTVVGDGNGRVGFGYGKAREVPAAIQKAMEKARRNMINVALNNGTLQHPVKGVHTGSRVFMQPASEGTGIIAGGAMRAVLEVAGVHNVLAKAYGSTNPINVVRATIDGLENMNSPEMVAAKRGKSVEEILGK. 0 14.0 10.0 2.419648359655896E-6 2.419648359655896E-6 0.0
/home/xiaowen/c_project/proteomics_cpp/testcases/data/st_no_digestion.msalign 1234 1722 2302 178 19 11206.303239550783 11206.238477902833 6636 gi|16766727|ref|NP_462342.1| 50S ribosomal subunit protein L23 [Salmonella typhimurium LT2] 11206.238477902833 1 100 .MIREERLLKVLRAPHVSEKASTAMEKTNTIVLKVAKDATKAEIKAAVQKLFEVEVEVVNTLVVKGKVKRHGQRIGRRSDWKKAYVTLKEGQNLDFVGGAE. 0 25.0 15.0 1.2855319970876196E-6 2.571063994175239E-6 0.0
/home/xiaowen/c_project/proteomics_cpp/testcases/data/st_no_digestion.msalign 674 1089 1458 57 8 6378.59771821875 6378.573545651855 6604 gi|16766711|ref|NP_462326.1| 50S ribosomal subunit protein L30 [Salmonella typhimurium LT2] 6509.614042478027 2 59 M.AKTIKITQTRSAIGRLPKHKATLLGLGLRRIGHTVEREDTPAVRGMVNAVSFMVKVEE. 0 11.0 9.0 2.593958367805542E-6 2.593958367805542E-6 0.0
/home/xiaowen/c_project/proteomics_cpp/testcases/data/st_no_digestion.msalign 539 946 1267 93 6 6394.600300328124 6394.630300328124 6604 gi|16766711|ref|NP_462326.1| 50S ribosomal subunit protein L30 [Salmonella typhimurium LT2] 6509.614042478027 2 59 M.AKTIKITQTRSAIGRLPKHKATLLGLGLRRIGHTVEREDTPAVRGMVNAVSF(M)[16.06]VKVEE. 1 21.0 15.0 1.036618178494538E-5 2.6153210925320917E-6 0.0
/home/xiaowen/c_project/proteomics_cpp/testcases/data/st_no_digestion.msalign 1331 1834 2451 83 23 14686.084263238281 14685.97115154785 6458 gi|16766639|ref|NP_462254.1| 30S ribosomal subunit protein S9 [Salmonella typhimurium LT2] 14817.011648374024 2 130 M.AENQYYGTGRRKSSAARVFIKPGNGKIVINQRSLEQYFGRETARMVVRQPLELVDMVEKLDLYITVKGGGISGQAGAIRHGITRALMEYDESLRGELRKAGFVTRDARQVERKKVGLRKARRRPQFSKR. 0 15.0 10.0 1.3524752301093607E-6 2.7049504602187215E-6 0.0
/home/xiaowen/c_project/proteomics_cpp/testcases/data/st_no_digestion.msalign 740 1156 1547 132 16 9518.3560485625 9518.289663510743 86 gi|16763433|ref|NP_459048.1| 30S ribosomal subunit protein S20 [Salmonella typhimurium LT2] 9649.330160336915 2 87 M.ANIKSAKKRAVQSEKARKHNASRRSMMRTFIKKVYAAIEAGDKAAALKAFNEMQPIVDRQAAKGLIHKNKAARHKANLTAQINKLA. 0 17.0 12.0 2.7337184456919332E-6 2.7337184456919332E-6 0.0
/home/xiaowen/c_project/proteomics_cpp/testcases/data/st_no_digestion.msalign 1 373 503 89 11 5377.089416917967 5377.076475339355 7424 gi|16767124|ref|NP_462739.1| 50S ribosomal subunit protein L34 [Salmonella typhimurium LT2] 5377.076475339355 1 46 .MKRTFQPSVLKRNRSHGFRARMATKNGRQVLARRRAKGRARLTVSK. 0 12.0 9.0 1.3949057366645402E-6 2.7898114733290803E-6 0.0
/home/xiaowen/c_project/proteomics_cpp/testcases/data/st_no_digestion.msalign 1400 1941 2594 46 20 14957.452394750002 14957.307417111815 6602 gi|16766710|ref|NP_462325.1| 50S ribosomal subunit protein L15 [Salmonella typhimurium LT2] 14957.307417111817 1 144 .MRLNTLSPAEGSKKAGKRLGRGIGSGLGKTGGRGHKGQKSRSGGGVRRGFEGGQMPLYRRLPKFGFTSRKAAITAEVRLSDLAKVEGGVVDLNTLKAANIIGIQIEFAKVILAGEVTTPVTVRGLRVTKGARAAIEAAGGKIEE. 0 8.0 8.0 1.4291916108158008E-6 2.8583832216316016E-6 0.0
/home/xiaowen/c_project/proteomics_cpp/testcases/data/st_no_digestion.msalign 595 1003 1343 166 11 9966.905728703128 9966.83842297119 2906 gi|16764848|ref|NP_460463.1| putative periplasmic protein [Salmonella typhimurium LT2] 13009.40887661499 29 113 A.ETSKLVIESGDSAQSRQEAAMEKEQWNDTRSLRQKVNTRAEKEWDKADAAFDNRDKCEQSANINAYWEPNTLRCLDRRTGRVITP. 0 19.0 18.0 1.529838695441525E-7 2.9066935213388976E-6 0.0
/home/xiaowen/c_project/proteomics_cpp/testcases/data/st_no_digestion.msalign 126 511 687 35 7 4078.237799207032 4078.2187406591793 2302 gi|16764546|ref|NP_460161.1| 50S ribosomal subunit protein L32 [Salmonella typhimurium LT2] 6442.431486325683 21 57 D.ALTAVTSLSVDKTSGEKHLRHHITADGYYRGRKVIAK. 0 9.0 7.0 1.940122877244995E-7 2.9101843158674927E-6 0.0
/home/xiaowen/c_project/proteomics_cpp/testcases/data/st_no_digestion.msalign 712 1127 1508 22 7 6509.6371661875 6509.614042478027 6604 gi|16766711|ref|NP_462326.1| 50S ribosomal subunit protein L30 [Salmonella typhimurium LT2] 6509.614042478027 1 59 .MAKTIKITQTRSAIGRLPKHKATLLGLGLRRIGHTVEREDTPAVRGMVNAVSFMVKVEE. 0 10.0 7.0 1.4744229680268165E-6 2.948845936053633E-6 0.0
/home/xiaowen/c_project/proteomics_cpp/testcases/data/st_no_digestion.msalign 662 1076 1440 11 18 11178.326345656253 11178.269117551268 6618 gi|16766718|ref|NP_462333.1| 50S ribosomal subunit protein L24 [Salmonella typhimurium LT2] 11309.309614377442 2 104 M.AAKIRRDDEVIVLTGKDKGKRGKVKNVLSSGKVIVEGINLVKKHQKPVPALNQPGGIVEKEAAIQVSNVAIFNAATGKADRVGFRFEDGKKVRFFKSNSETIK. 0 4.0 4.0 3.242033983735569E-6 3.242033983735569E-6 0.0
/home/xiaowen/c_project/proteomics_cpp/testcases/data/st_no_digestion.msalign 382 786 1054 42 6 2554.472250511719 2554.472250511719 6198 gi|16766509|ref|NP_462124.1| 30S ribosomal subunit protein S21 [Salmonella typhimurium LT2] 8551.747667508545 2 22 M.PVIKVRENEPFD(VALRRFKRS)[-.97].C 1 17.0 14.0 1.6029995119814979E-7 3.3601892323975447E-6 0.0
/home/xiaowen/c_project/proteomics_cpp/testcases/data/st_no_digestion.msalign 579 987 1322 110 11 9850.82300603125 9850.82300603125 2906 gi|16764848|ref|NP_460463.1| putative periplasmic protein [Salmonella typhimurium LT2] 13009.40887661499 29 113 A.ETSKLVIESGDSAQSRQEAAMEKEQWNDTRSLRQKVNTRAEKEWDKADAAFD(NRDKCEQSANINAYWEPNTLR)[-116.02]CLDRRTGRVITP. 1 26.0 19.0 6.127653783232806E-8 3.369003806325854E-6 0.0
/home/xiaowen/c_project/proteomics_cpp/testcases/data/st_no_digestion.msalign 12 384 518 89 12 5377.092089648438 5377.076475339355 7424 gi|16767124|ref|NP_462739.1| 50S ribosomal subunit protein L34 [Salmonella typhimurium LT2] 5377.076475339355 1 46 .MKRTFQPSVLKRNRSHGFRARMATKNGRQVLARRRAKGRARLTVSK. 0 11.0 9.0 1.7165650958542648E-6 3.4331301917085297E-6 0.0
/home/xiaowen/c_project/proteomics_cpp/testcases/data/st_no_digestion.msalign 1203 1688 2256 138 15 15853.369312054685 15853.248838620606 444 gi|16763615|ref|NP_459230.1| outer membrane protein H precursor [Salmonella typhimurium LT2] 17894.370474057618 21 161 A.ADKIAIVNMGNLFQQVAQKTGVSNTLENEFKGRAAELQKMETDLQSKMQRLQSMKAGSDRTKLEKDVMSQRQTFAQKAQAFEKDRARRSNEERNKLVTRIQTAVKKVANDQSIDLVVDANTVAYNSSDVKDITADVLKQVK. 0 18.0 17.0 1.0161434410242726E-7 3.454887699482527E-6 0.0
/home/xiaowen/c_project/proteomics_cpp/testcases/data/st_no_digestion.msalign 1201 1686 2254 165 16 15853.389501874999 15853.369501874999 444 gi|16763615|ref|NP_459230.1| outer membrane protein H precursor [Salmonella typhimurium LT2] 17894.370474057618 2 161 M.(KKWLLAAGLGLAMVTSAQA)[42.01]ADKIAIVNMGNLFQQVAQKTGVSNTLENEFKGRAAELQKMETDLQSKMQRLQSMKA(GSDRTKLEKDVMSQRQTFAQKAQAFEKDRARRS)[-1951.97]NEERNKLVTRIQTAVKKVANDQSIDLVVDANTVAYNSSDVKDITADVLKQVK. 1 22.0 21.0 3.732880074540428E-7 3.574009751044291E-6 0.0
/home/xiaowen/c_project/proteomics_cpp/testcases/data/st_no_digestion.msalign 1746 2415 3226 33 18 13493.239485140626 13493.076029019776 8572 gi|16767703|ref|NP_463318.1| putative translation initiation inhibitor [Salmonella typhimurium LT2] 13624.116525845948 2 128 M.SKTIATENAPAAIGPYVQGVDLGSMVITSGQIPVDPKTGAVAEDVSAQARQSLENVKAIVEAAGLKVGDIVKTTVFVKDLNDFATVNATYEAFFTEHNATFPARSCVEVARLPKDVKIEIEAIAVRR. 0 6.0 6.0 3.777082682328135E-6 3.777082682328135E-6 0.0
/home/xiaowen/c_project/proteomics_cpp/testcases/data/st_no_digestion.msalign 550 957 1282 57 5 4274.243361039064 4274.226270871578 2072 gi|16764429|ref|NP_460044.1| putative hydrogenase membrane component precurosr [Salmonella typhimurium LT2] 37605.86566753906 313 350 G.NTCDNVKPRAALIDCLAPDRRVEIEVKGVKDVVTQPQA. 0 12.0 10.0 9.798593357013734E-8 3.8214514092353566E-6 0.0
/home/xiaowen/c_project/proteomics_cpp/testcases/data/st_no_digestion.msalign 381 785 1052 42 5 2554.4745826640624 2554.464582664062 6198 gi|16766509|ref|NP_462124.1| 30S ribosomal subunit protein S21 [Salmonella typhimurium LT2] 8551.747667508545 2 22 M.PVIKVRENEPFDVALRR(FKRS)[-.98].C 1 13.0 11.0 1.8593735358394826E-7 3.8971505257706015E-6 0.0
/home/xiaowen/c_project/proteomics_cpp/testcases/data/st_no_digestion.msalign 805 1222 1635 44 12 9518.333883031253 9518.289663510743 86 gi|16763433|ref|NP_459048.1| 30S ribosomal subunit protein S20 [Salmonella typhimurium LT2] 9649.330160336915 2 87 M.ANIKSAKKRAVQSEKARKHNASRRSMMRTFIKKVYAAIEAGDKAAALKAFNEMQPIVDRQAAKGLIHKNKAARHKANLTAQINKLA. 0 8.0 7.0 4.0576364813198985E-6 4.0576364813198985E-6 0.0
/home/xiaowen/c_project/proteomics_cpp/testcases/data/st_no_digestion.msalign 1896 2742 3662 20 16 12202.5481601875 12202.440977292481 7986 gi|16767406|ref|NP_463021.1| 50S ribosomal subunit protein L7/L12 [Salmonella typhimurium LT2] 12291.470907407227 2 121 M.(S)[42.01]ITKDQIIEAVSAMSVMDVVELISAMEEKFGVSAAAAVAVAAGPAEAAEEKTEFDVILKAAGANKVAVIKAVRGATGLGLKEAKDLVESAPAALKEGVSKDDAEALKKSLEEAGAEVEVK. 0 8.0 5.0 4.063910257335589E-6 4.063910257335589E-6 0.0
/home/xiaowen/c_project/proteomics_cpp/testcases/data/st_no_digestion.msalign 1179 1659 2218 76 18 12218.820359351565 12218.769315915526 6630 gi|16766724|ref|NP_462339.1| 50S ribosomal subunit protein L22 [Salmonella typhimurium LT2] 12218.769315915528 1 110 .METIAKHRHARSSAQKVRLVADLIRGKKVSQALDILTYTNKKAAVLVKKVLESAIANAEHNDGADIDDLKVTKIFVDEGPSMKRIMPRAKGRADRILKRTSHITVVVSDR. 0 10.0 9.0 2.1293207931491E-6 4.2586415862982E-6 0.0
/home/xiaowen/c_project/proteomics_cpp/testcases/data/st_no_digestion.msalign 6 378 510 89 13 5377.086858326172 5377.076475339355 7424 gi|16767124|ref|NP_462739.1| 50S ribosomal subunit protein L34 [Salmonella typhimurium LT2] 5377.076475339355 1 46 .MKRTFQPSVLKRNRSHGFRARMATKNGRQVLARRRAKGRARLTVSK. 0 10.0 9.0 2.5568803649899405E-6 5.113760729979881E-6 0.0
/home/xiaowen/c_project/proteomics_cpp/testcases/data/st_no_digestion.msalign 475 882 1182 130 14 7825.963083242187 7825.963083242187 7898 gi|16767362|ref|NP_462977.1| 50S ribosomal subunit protein L31 [Salmonella typhimurium LT2] 7941.9762403540035 1 70 .MKKGIHPNYVEITATCSCGNVIKTHSTVGHDLNLDV(CGKCHPFFTGKQRVVD)[-116.01]TGGRVERFNKRFSIPGSK. 1 23.0 15.0 2.4920262283396714E-5 5.259896111767719E-6 0.0
/home/xiaowen/c_project/proteomics_cpp/testcases/data/st_no_digestion.msalign 5 377 508 89 9 5377.083522140625 5377.076475339355 7424 gi|16767124|ref|NP_462739.1| 50S ribosomal subunit protein L34 [Salmonella typhimurium LT2] 5377.076475339355 1 46 .MKRTFQPSVLKRNRSHGFRARMATKNGRQVLARRRAKGRARLTVSK. 0 11.0 10.0 2.702971351216028E-6 5.405942702432056E-6 0.0
/home/xiaowen/c_project/proteomics_cpp/testcases/data/st_no_digestion.msalign 1380 1917 2562 26 16 11230.0562076875 11229.943952756348 2590 gi|16764690|ref|NP_460305.1| integration host factor alpha subunit [Salmonella typhimurium LT2] 11360.98444958252 2 99 M.ALTKAEMSEYLFDKLGLSKRDAKELVELFFEEIRRALENGEQVKLSGFGNFDLRDKNQRPGRNPKTGEDIPITARRVVTFRPGQKLKSRVENASPKEE. 0 7.0 6.0 5.423775775191486E-6 5.423775775191486E-6 0.0
/home/xiaowen/c_project/proteomics_cpp/testcases/data/st_no_digestion.msalign 1612 2235 2986 13 10 8824.824755320316 8824.76904888672 8554 gi|16767695|ref|NP_463310.1| putative regulatory protein [Salmonella typhimurium LT2] 8955.809545712891 2 80 M.ATLNVRLDDKLKNEAYAVLEKLNITPTEAVRLLFQYVAETGRMPVKTVTLSDSEDALIQTVRERLSSPQKGIKVSLDDL. 0 5.0 5.0 5.622008270310007E-6 5.622008270310007E-6 0.0
/home/xiaowen/c_project/proteomics_cpp/testcases/data/st_no_digestion.msalign 1202 1687 2255 65 21 15853.383517382812 15853.383517382812 4144 gi|16765477|ref|NP_461092.1| putative periplasmic protein [Salmonella typhimurium LT2] 11884.955469327393 20 104 A.APATTGIDQYELKSFIADFTHFKPGDTVPQMYRTDEYNIKQWKLRNLPAPDAGTHWTYMGGA(Y)[6070.57]VLINDTDGKIIKAYDGEIFYHR. 1 23.0 15.0 1.653676945795197E-9 5.6643212298695055E-6 0.0
/home/xiaowen/c_project/proteomics_cpp/testcases/data/st_no_digestion.msalign 888 1309 1751 103 17 10060.505677425783 10060.428564267577 6342 gi|16766581|ref|NP_462196.1| 30S ribosomal subunit protein S15 [Salmonella typhimurium LT2] 10191.46906109375 2 89 M.SLSTEATAKIVSEFGRDANDTGSTDVQVALLTAQINHLQGHFAEHKKDHHSRRGLLRMVSQRRKLLDYLKRKDVARYTALIERLGLRR. 0 15.0 10.0 5.826586815643193E-6 5.826586815643193E-6 0.0
/home/xiaowen/c_project/proteomics_cpp/testcases/data/st_no_digestion.msalign 379 783 1050 42 5 2554.4745826640624 2554.464582664062 6198 gi|16766509|ref|NP_462124.1| 30S ribosomal subunit protein S21 [Salmonella typhimurium LT2] 8551.747667508545 2 22 M.PVIKVRENEPFDVALRR(FKRS)[-.98].C 1 17.0 11.0 2.87680346916054E-7 6.029630914003473E-6 0.0
/home/xiaowen/c_project/proteomics_cpp/testcases/data/st_no_digestion.msalign 1656 2283 3050 24 13 12106.045228914063 12105.95568295044 938 gi|16763865|ref|NP_459480.1| putative cytoplasmic protein [Salmonella typhimurium LT2] 12063.945116239014 1 109 .(M)[42.01]FGKGGLGNLMKQAQQMQEKMQKMQEEIAQLEVTGESGAGLVKVTINGAHNCRRVEIDPSLLEDDKEMLEDLVAAAFNDAARRIEETQKEKMASVSSGMQLPPGFKMPF. 0 7.0 7.0 3.0190311194578837E-6 6.038062238915767E-6 0.0
/home/xiaowen/c_project/proteomics_cpp/testcases/data/st_no_digestion.msalign 1410 1952 2608 16 9 9113.802022058593 9113.737188535157 4692 gi|16765751|ref|NP_461366.1| phosphohistidinoprotein-hexose phosphotransferase [Salmonella typhimurium LT2] 9113.737188535157 1 85 .MFQQEVTITAPNGLHTRPAAQFVKEAKGFTSEITVTSNGKSASAKSLFKLQTLGLTQGTVVTISAEGEDEQKAVEHLVKLMAELE. 0 5.0 5.0 3.140793881889371E-6 6.281587763778742E-6 0.0
/home/xiaowen/c_project/proteomics_cpp/testcases/data/st_no_digestion.msalign 522 929 1244 92 7 6394.588934972656 6394.588934972656 6604 gi|16766711|ref|NP_462326.1| 50S ribosomal subunit protein L30 [Salmonella typhimurium LT2] 6509.614042478027 2 59 M.AKTIKITQTRSAIGRLPKHKATLLGLGLRRIGHTVERED(TPAVRGMVNA)[16.02]VSFMVKVEE. 1 20.0 15.0 2.5985041859672046E-5 6.519969444716982E-6 0.0
/home/xiaowen/c_project/proteomics_cpp/testcases/data/st_no_digestion.msalign 1531 2122 2835 31 11 9249.118356675783 9249.118356675783 870 gi|16763832|ref|NP_459447.1| DNA-binding protein HU-beta [Salmonella typhimurium LT2] 9234.010030942383 1 90 .(MNKSQLIEKI)[15.11]AAGADISKAAAGRALDAIIASVTESLKEGDDVALVGFGTFAVKERAARTGRNPQTGKEITIAAAKVPSFRAGKALKDAVN. 1 8.0 8.0 2.7122104831577598E-5 6.720973280096081E-6 0.0
/home/xiaowen/c_project/proteomics_cpp/testcases/data/st_no_digestion.msalign 124 509 684 84 10 6326.401408523438 6326.401408523438 2302 gi|16764546|ref|NP_460161.1| 50S ribosomal subunit protein L32 [Salmonella typhimurium LT2] 6442.431486325683 2 57 M.AVQQNKPTRSKRGMRRSHDALTAV(TSL)[15.01]SVDKTSGEKHLRHHITADGYYRGRKVIAK. 1 16.0 11.0 5.270824168891487E-5 6.912556287070803E-6 0.0
/home/xiaowen/c_project/proteomics_cpp/testcases/data/st_no_digestion.msalign 1462 2018 2696 29 14 15163.544098453125 15163.423299985352 8448 gi|16767637|ref|NP_463252.1| 30S ribosomal subunit protein S6 [Salmonella typhimurium LT2] 15163.423299985352 1 131 .MRHYEIVFMVHPDQSEQVPGMIERYSAAITGAEGKIHRLEDWGRRQLAYPINKLHKAHYVLMNVEAPQEVIDELETTFRFNDAVIRSMVMRTKHAVTEASPMVKAKDERRERRDDFANETADDAEAGDSEE. 0 8.0 7.0 3.5785651432682716E-6 7.157130286536543E-6 0.0
/home/xiaowen/c_project/proteomics_cpp/testcases/data/st_no_digestion.msalign 7 379 511 89 9 5377.080226242188 5377.076475339355 7424 gi|16767124|ref|NP_462739.1| 50S ribosomal subunit protein L34 [Salmonella typhimurium LT2] 5377.076475339355 1 46 .MKRTFQPSVLKRNRSHGFRARMATKNGRQVLARRRAKGRARLTVSK. 0 10.0 10.0 3.58501774570312E-6 7.17003549140624E-6 0.0
/home/xiaowen/c_project/proteomics_cpp/testcases/data/st_no_digestion.msalign 1479 2048 2736 37 9 9387.833390164062 9387.794996457518 3320 gi|16765059|ref|NP_460674.1| putative cytoplasmic protein [Salmonella typhimurium LT2] 9387.79499645752 1 83 .MHKETQPIDRETLLLEANKIIREHEDTMAGIVATGVTQRNGVLVFSGDYFLDEQGLPTPKSTAVFNMFKHLAHVLSEKYHLVD. 0 9.0 8.0 3.6258462777486117E-6 7.251692555497223E-6 0.0
/home/xiaowen/c_project/proteomics_cpp/testcases/data/st_no_digestion.msalign 330 730 979 30 10 7210.276084859374 7210.254739957275 2582 gi|16764686|ref|NP_460301.1| 50S ribosomal subunit protein L35 [Salmonella typhimurium LT2] 7341.295236783447 2 65 M.PKIKTVRGAAKRFKKTGKGGFKHKHANLRHILTKKATKRKRHLRPKAMVSKGDLGLVIACLPYA. 0 7.0 5.0 7.405168065425826E-6 7.405168065425826E-6 0.0
/home/xiaowen/c_project/proteomics_cpp/testcases/data/st_no_digestion.msalign 1165 1643 2196 42 10 10929.704147328126 10929.704147328126 3624 gi|16765215|ref|NP_460830.1| putative exported protein [Salmonella typhimurium LT2] 12834.850965695801 20 117 A.APQVITVSRFEVGKDKWAFNREEVMLTCRPGQALYVIN(PS)[-.96]TLVQYPLNAIAEQQVAEGKTRAQPIAVIQIDNPAKPGEKMSLAPFIERAQKLCDPSNS. 1 22.0 16.0 2.9103998463072385E-7 7.455410889921702E-6 0.0
/home/xiaowen/c_project/proteomics_cpp/testcases/data/st_no_digestion.msalign 118 503 676 53 8 11065.876618312499 11065.876618312499 1452 gi|16764124|ref|NP_459739.1| hypothetical protein STM0759 [Salmonella typhimurium LT2] 13436.224081235352 25 128 A.AESNAQSSNGQANSAANAGQVAPDARQNVAPNDVNNNDINTNGNTNSTMQHPDGSTMNHDGMTKDEEHKNTMCKDGRCPDINKK(VETGNGVNND)[1.01]VNTKTDGTTQ. 1 18.0 14.0 3.0272945684513665E-7 7.865448724493313E-6 0.0
/home/xiaowen/c_project/proteomics_cpp/testcases/data/st_no_digestion.msalign 280 680 912 72 11 6293.628813699219 6293.628813699219 7204 gi|16767012|ref|NP_462627.1| 50S ribosomal subunit protein L33 [Salmonella typhimurium LT2] 6367.619703488769 1 55 .MAKGIRE(KIKLVSS)[-73.99]AGTGHFYTTTKNKRTKPEKLELKKFDPVVRQHVIYKEAKIK. 1 11.0 10.0 9.221805842130407E-5 7.97473746300926E-6 0.0
/home/xiaowen/c_project/proteomics_cpp/testcases/data/st_no_digestion.msalign 841 1259 1684 93 14 8905.873390109375 8905.873390109375 8452 gi|16767639|ref|NP_463254.1| 30S ribosomal subunit protein S18 [Salmonella typhimurium LT2] 9122.931947904053 2 75 M.ARYFRRRKFCRFTAEGVQEIDYKDIATLKNYITESGKIVPSRITGTRAKYQ(RQLRRAIKRARYLSLL)[-86.02]PYTDRHQ. 1 15.0 12.0 2.9743030578470115E-5 8.225825093086224E-6 0.0
/home/xiaowen/c_project/proteomics_cpp/testcases/data/st_no_digestion.msalign 146 533 716 22 8 4490.436883 4490.436883 6598 gi|16766708|ref|NP_462323.1| 50S ribosomal subunit protein X [Salmonella typhimurium LT2] 4532.514040189209 1 38 .M(KVRASVKKLCRNCKIVKRDGVIRVIC)[-42.08]SAEPKHKQRQG. 1 9.0 7.0 2.992345390833366E-4 8.378254618636691E-6 0.0
/home/xiaowen/c_project/proteomics_cpp/testcases/data/st_no_digestion.msalign 1964 3107 4148 30 12 11759.48508903125 11759.412664609375 6642 gi|16766730|ref|NP_462345.1| 30S ribosomal subunit protein S10 [Salmonella typhimurium LT2] 11759.412664609375 1 103 .MQNQRIRIRLKAFDHRLIDQSTAEIVETAKRTGAQVRGPIPLPTRKERFTVLISPHVNKDARDQYEIRTHKRLVDIVEPTEKTVDALMRLDLAAGVDVQISLG. 0 8.0 7.0 2.0946354354644495E-6 8.378541741857798E-6 0.0
/home/xiaowen/c_project/proteomics_cpp/testcases/data/st_no_digestion.msalign 1394 1933 2583 94 21 14957.389698828129 14957.307417111817 6602 gi|16766710|ref|NP_462325.1| 50S ribosomal subunit protein L15 [Salmonella typhimurium LT2] 14957.307417111817 1 144 .MRLNTLSPAEGSKKAGKRLGRGIGSGLGKTGGRGHKGQKSRSGGGVRRGFEGGQMPLYRRLPKFGFTSRKAAITAEVRLSDLAKVEGGVVDLNTLKAANIIGIQIEFAKVILAGEVTTPVTVRGLRVTKGARAAIEAAGGKIEE. 0 10.0 10.0 4.2380519466170306E-6 8.476103893234061E-6 0.0
/home/xiaowen/c_project/proteomics_cpp/testcases/data/st_no_digestion.msalign 1863 2661 3554 14 15 12291.559034261718 12291.470907407229 7986 gi|16767406|ref|NP_463021.1| 50S ribosomal subunit protein L7/L12 [Salmonella typhimurium LT2] 12291.470907407227 1 121 .MSITKDQIIEAVSAMSVMDVVELISAMEEKFGVSAAAAVAVAAGPAEAAEEKTEFDVILKAAGANKVAVIKAVRGATGLGLKEAKDLVESAPAALKEGVSKDDAEALKKSLEEAGAEVEVK. 0 6.0 6.0 4.299931129906728E-6 8.599862259813457E-6 0.0
/home/xiaowen/c_project/proteomics_cpp/testcases/data/st_no_digestion.msalign 1061 1502 2008 184 16 11759.510184249999 11759.412664609375 6642 gi|16766730|ref|NP_462345.1| 30S ribosomal subunit protein S10 [Salmonella typhimurium LT2] 11759.412664609375 1 103 .MQNQRIRIRLKAFDHRLIDQSTAEIVETAKRTGAQVRGPIPLPTRKERFTVLISPHVNKDARDQYEIRTHKRLVDIVEPTEKTVDALMRLDLAAGVDVQISLG. 0 23.0 16.0 2.173595291408128E-6 8.694381165632511E-6 0.0
/home/xiaowen/c_project/proteomics_cpp/testcases/data/st_no_digestion.msalign 1124 1593 2130 79 9 9229.077670859373 9229.012678342287 5168 gi|16765991|ref|NP_461606.1| 30S ribosomal subunit protein S16 [Salmonella typhimurium LT2] 9229.012678342286 1 82 .MVTIRLARHGAKKRPFYQVVVTDSRNARNGRFIERVGFFNPIASEKEEGTRLDLDRIAHWVGQGATISDRVAALIKEVKKAA. 0 12.0 11.0 4.462245574035758E-6 8.924491148071516E-6 0.0
/home/xiaowen/c_project/proteomics_cpp/testcases/data/st_no_digestion.msalign 1423 1967 2628 46 10 9113.81763424219 9113.737188535157 4692 gi|16765751|ref|NP_461366.1| phosphohistidinoprotein-hexose phosphotransferase [Salmonella typhimurium LT2] 9113.737188535157 1 85 .MFQQEVTITAPNGLHTRPAAQFVKEAKGFTSEITVTSNGKSASAKSLFKLQTLGLTQGTVVTISAEGEDEQKAVEHLVKLMAELE. 0 8.0 8.0 4.564443072731187E-6 9.128886145462374E-6 0.0
/home/xiaowen/c_project/proteomics_cpp/testcases/data/st_no_digestion.msalign 1287 1780 2379 95 17 11642.059642910159 11642.040060239258 8534 gi|16767685|ref|NP_463300.1| cytochrome b562 [Salmonella typhimurium LT2] 13903.336981015625 23 128 A.ADLEDNMDILNDNLKVVEKTDSAPELKAALTKMRAAALDAQKATPPKLEDKAPDSPEMKDFRHGFDILVGQIDGALKLANEGNVKEAKAAAEALKTTRNTYHKKYR. 0 19.0 14.0 2.347461487775572E-7 9.389845951102287E-6 0.0
/home/xiaowen/c_project/proteomics_cpp/testcases/data/st_no_digestion.msalign 731 1146 1534 19 15 9518.337140480471 9518.289663510743 86 gi|16763433|ref|NP_459048.1| 30S ribosomal subunit protein S20 [Salmonella typhimurium LT2] 9649.330160336915 2 87 M.ANIKSAKKRAVQSEKARKHNASRRSMMRTFIKKVYAAIEAGDKAAALKAFNEMQPIVDRQAAKGLIHKNKAARHKANLTAQINKLA. 0 6.0 6.0 9.504059053924608E-6 9.504059053924608E-6 0.0
/home/xiaowen/c_project/proteomics_cpp/testcases/data/st_no_digestion.msalign 184 573 770 90 11 6348.56906028125 6348.56906028125 7204 gi|16767012|ref|NP_462627.1| 50S ribosomal subunit protein L33 [Salmonella typhimurium LT2] 6367.619703488769 1 55 .MA(KGIREKIKLVSSAG)[-19.05]TGHFYTTTKNKRTKPEKLELKKFDPVVRQHVIYKEAKIK. 1 12.0 11.0 1.8832962013862355E-4 1.0001769755591732E-5 0.0
/home/xiaowen/c_project/proteomics_cpp/testcases/data/st_no_digestion.msalign 327 727 975 135 14 8420.739832117188 8420.707170682374 6198 gi|16766509|ref|NP_462124.1| 30S ribosomal subunit protein S21 [Salmonella typhimurium LT2] 8551.747667508545 2 71 M.PVIKVRENEPFDVALRRFKRSCEKAGVLAEVRRREFYEKPTTERKRAKASAVKRHAKKLARENARRTRLY. 0 11.0 10.0 1.0011280041416698E-5 1.0011280041416698E-5 0.0
/home/xiaowen/c_project/proteomics_cpp/testcases/data/st_no_digestion.msalign 876 1297 1735 67 15 10060.492214289061 10060.428564267579 6342 gi|16766581|ref|NP_462196.1| 30S ribosomal subunit protein S15 [Salmonella typhimurium LT2] 10191.46906109375 2 89 M.SLSTEATAKIVSEFGRDANDTGSTDVQVALLTAQINHLQGHFAEHKKDHHSRRGLLRMVSQRRKLLDYLKRKDVARYTALIERLGLRR. 0 12.0 8.0 1.0038760771873413E-5 1.0038760771873413E-5 0.0
/home/xiaowen/c_project/proteomics_cpp/testcases/data/st_no_digestion.msalign 1870 2668 3563 26 17 12289.560900718752 12289.520900718751 7986 gi|16767406|ref|NP_463021.1| 50S ribosomal subunit protein L7/L12 [Salmonella typhimurium LT2] 12291.470907407227 1 121 .(MSITKDQ)[-1.95]IIEAVSAMSVMDVVELISAMEEKFGVSAAAAVAVAAGPAEAAEEKTEFDVILKAAGANKVAVIKAVRGATGLGLKEAKDLVESAPAALKEGVSKDDAEALKKSLEEAGAEVEVK. 1 8.0 8.0 3.697453874411378E-5 1.010364534156691E-5 0.0
/home/xiaowen/c_project/proteomics_cpp/testcases/data/st_no_digestion.msalign 577 985 1319 31 4 3091.434616453125 3091.4212324194305 2072 gi|16764429|ref|NP_460044.1| putative hydrogenase membrane component precurosr [Salmonella typhimurium LT2] 37605.86566753906 22 48 A.APKDNTWYAGAKLGWSQYHDTGFIHND.G 0 7.0 6.0 4.351110455351521E-9 1.0283748607055009E-5 0.0
/home/xiaowen/c_project/proteomics_cpp/testcases/data/st_no_digestion.msalign 88 466 627 66 14 11080.9325716875 11080.9325716875 2302 gi|16764546|ref|NP_460161.1| 50S ribosomal subunit protein L32 [Salmonella typhimurium LT2] 6442.431486325683 2 57 M.AVQQNKPTRSKRGMRRSHDALTA(V)[4769.54]TSLSVDKTSGEKHLRHHITADGYYRGRKVIAK. 1 15.0 12.0 7.124560641063772E-7 1.0475852227038638E-5 0.0
/home/xiaowen/c_project/proteomics_cpp/testcases/data/st_no_digestion.msalign 1217 1705 2279 33 14 10304.6026625625 10304.534986691897 7548 gi|16767186|ref|NP_462801.1| peptidyl-prolyl cis-trans isomerase C [Salmonella typhimurium LT2] 10435.575483518067 2 93 M.AKMAAALHILVKEEKLALDLLEQIKNGGDFEKLAKKHSICPSGKKGGHLGEFRQGQMVPAFDKVVFSCPVLEPTGPLHTQFGYHIIKVLYRK. 0 10.0 6.0 1.0966634236082083E-5 1.0966634236082083E-5 0.0
/home/xiaowen/c_project/proteomics_cpp/testcases/data/st_no_digestion.msalign 889 1310 1752 126 18 10060.497485898437 10060.428564267579 6342 gi|16766581|ref|NP_462196.1| 30S ribosomal subunit protein S15 [Salmonella typhimurium LT2] 10191.46906109375 2 89 M.SLSTEATAKIVSEFGRDANDTGSTDVQVALLTAQINHLQGHFAEHKKDHHSRRGLLRMVSQRRKLLDYLKRKDVARYTALIERLGLRR. 0 18.0 11.0 1.1109919428074902E-5 1.1109919428074902E-5 0.0
/home/xiaowen/c_project/proteomics_cpp/testcases/data/st_no_digestion.msalign 1230 1718 2296 31 12 11206.310409343752 11206.238477902833 6636 gi|16766727|ref|NP_462342.1| 50S ribosomal subunit protein L23 [Salmonella typhimurium LT2] 11206.238477902833 1 100 .MIREERLLKVLRAPHVSEKASTAMEKTNTIVLKVAKDATKAEIKAAVQKLFEVEVEVVNTLVVKGKVKRHGQRIGRRSDWKKAYVTLKEGQNLDFVGGAE. 0 11.0 8.0 5.607122296605824E-6 1.1214244593211648E-5 0.0
/home/xiaowen/c_project/proteomics_cpp/testcases/data/st_no_digestion.msalign 668 1083 1450 149 19 8970.916782058595 8970.880617337647 7206 gi|16767013|ref|NP_462628.1| 50S ribosomal subunit protein L28 [Salmonella typhimurium LT2] 9101.921114163819 2 78 M.SRVCQVTGKRPVTGNNRSHALNATKRRFLPNLHSHRFWVESEKRFVTLRVSAKGMRIIDKKGIETVLSELRARGEKY. 0 17.0 12.0 1.1333312055626966E-5 1.1333312055626966E-5 0.0
/home/xiaowen/c_project/proteomics_cpp/testcases/data/st_no_digestion.msalign 775 1192 1595 76 12 12995.51654571875 12995.41010494751 7524 gi|16767174|ref|NP_462789.1| putative transcriptional regulator [Salmonella typhimurium LT2] 13126.450601773682 2 112 M.AESFTTTNRYFDNKHYPRGFSRHGDFTIKEAQLLERHGHAFNDLDLGKREPVTEEEKLFVAVCRGEREPVTDAERVWSKYMTRIKRPKRFHTLSGGKPQVEGAEDYTEADD. 0 11.0 11.0 1.1525390756977913E-5 1.1525390756977913E-5 0.0
/home/xiaowen/c_project/proteomics_cpp/testcases/data/st_no_digestion.msalign 547 954 1278 42 9 6525.639154714844 6525.6141547148445 6604 gi|16766711|ref|NP_462326.1| 50S ribosomal subunit protein L30 [Salmonella typhimurium LT2] 6509.614042478027 1 59 .MAKTIKITQTRSAIGRLPKHKATLLGLGLRRIGHTVEREDTPAVRGMVNAVS(FM)[16.00]VKVEE. 1 14.0 11.0 4.632731482076543E-5 1.1900594632857176E-5 0.0
/home/xiaowen/c_project/proteomics_cpp/testcases/data/st_no_digestion.msalign 819 1237 1655 19 5 5143.510761429689 5143.484304624019 3658 gi|16765232|ref|NP_460847.1| putative peptidase [Salmonella typhimurium LT2] 48938.380041318356 51 97 K.TIELEKSEIRSLLPEASEPIDQAAQEDEAIPQDELDDKTAGEVGVHE.Y 0 8.0 8.0 3.4269467522241016E-9 1.1907314208406772E-5 0.0
/home/xiaowen/c_project/proteomics_cpp/testcases/data/st_no_digestion.msalign 594 1002 1342 166 13 9965.907961371095 9965.797961371094 2906 gi|16764848|ref|NP_460463.1| putative periplasmic protein [Salmonella typhimurium LT2] 13009.40887661499 2 113 M.NNTLSK(RLCLTAMLTLAAVVYTTSAFAETSKLVI)[-2912.57]ESGDSAQSRQEAAMEKEQWNDTRSLRQKVNTRAEKEWDKADAAFDNRDKCEQSANINAYWEPNTLRCLDRRTGRVITP. 1 28.0 20.0 1.5167094324301186E-6 1.2668018072432581E-5 0.0
/home/xiaowen/c_project/proteomics_cpp/testcases/data/st_no_digestion.msalign 857 1277 1708 45 15 9699.296621578125 9699.24207897705 6622 gi|16766720|ref|NP_462335.1| 30S ribosomal subunit protein S17 [Salmonella typhimurium LT2] 9830.282575803223 2 84 M.TDKIRTLQGRVVSDKMEKSIVVAIERFVKHPIYGKFIKRTTKMHVHDENNECGIGDVVEIRECRPLSKTKSWTLVRVVEKAVL. 0 11.0 8.0 1.2694414514062158E-5 1.2694414514062158E-5 0.0
/home/xiaowen/c_project/proteomics_cpp/testcases/data/st_no_digestion.msalign 1111 1571 2100 143 11 9229.068062707032 9229.012678342286 5168 gi|16765991|ref|NP_461606.1| 30S ribosomal subunit protein S16 [Salmonella typhimurium LT2] 9229.012678342286 1 82 .MVTIRLARHGAKKRPFYQVVVTDSRNARNGRFIERVGFFNPIASEKEEGTRLDLDRIAHWVGQGATISDRVAALIKEVKKAA. 0 11.0 11.0 6.360082836257411E-6 1.2720165672514822E-5 0.0
/home/xiaowen/c_project/proteomics_cpp/testcases/data/st_no_digestion.msalign 459 866 1160 99 15 7824.960629019534 7824.960629019534 7898 gi|16767362|ref|NP_462977.1| 50S ribosomal subunit protein L31 [Salmonella typhimurium LT2] 7941.9762403540035 1 70 .MKKGIHPNYVE(ITATCSCGNV)[-117.02]IKTHSTVGHDLNLDVCGKCHPFFTGKQRVVDTGGRVERFNKRFSIPGSK. 1 17.0 12.0 6.1206874922891E-5 1.2918877006959243E-5 0.0
/home/xiaowen/c_project/proteomics_cpp/testcases/data/st_no_digestion.msalign 804 1221 1634 27 15 9518.336224953127 9518.289663510743 86 gi|16763433|ref|NP_459048.1| 30S ribosomal subunit protein S20 [Salmonella typhimurium LT2] 9649.330160336915 2 87 M.ANIKSAKKRAVQSEKARKHNASRRSMMRTFIKKVYAAIEAGDKAAALKAFNEMQPIVDRQAAKGLIHKNKAARHKANLTAQINKLA. 0 6.0 6.0 1.3229109350279425E-5 1.3229109350279425E-5 0.0
/home/xiaowen/c_project/proteomics_cpp/testcases/data/st_no_digestion.msalign 763 1179 1578 55 18 10278.712617648436 10278.658636289065 6632 gi|16766725|ref|NP_462340.1| 30S ribosomal subunit protein S19 [Salmonella typhimurium LT2] 10409.699133115235 2 92 M.PRSLKKGPFIDLHLLKKVEKAVESGDKKPLRTWSRRSTIFPNMIGLTIAVHNGRQHVPVFVSDEMVGHKLGEFAPTRTYRGHAADKKAKKK. 0 7.0 6.0 1.414462662728955E-5 1.414462662728955E-5 0.0
/home/xiaowen/c_project/proteomics_cpp/testcases/data/st_no_digestion.msalign 1146 1619 2164 177 21 12762.069659992187 12761.967558103028 6608 gi|16766713|ref|NP_462328.1| 50S ribosomal subunit protein L18 [Salmonella typhimurium LT2] 12761.967558103028 1 117 .MDKKSARIRRATRARRKLKELGATRLVVHRTPRHIYAQVIAPNGSEVLVAASTVEKAIAEQLKYTGNKDAAAAVGKAVAERALEKGIKDVSFDRSGFQYHGRVQALADAAREAGLQF. 0 21.0 13.0 7.232994032764013E-6 1.4465988065528026E-5 0.0
/home/xiaowen/c_project/proteomics_cpp/testcases/data/st_no_digestion.msalign 96 476 640 184 14 11063.960647859374 11063.915647859374 1452 gi|16764124|ref|NP_459739.1| hypothetical protein STM0759 [Salmonella typhimurium LT2] 13436.224081235352 25 128 A.AESNAQSSNGQANSAANAGQVAPDARQNV(A)[-.95]PNDVNNNDINTNGNTNSTMQHPDGSTMNHDGMTKDEEHKNTMCKDGRCPDINKKVETGNGVNNDVNTKTDGTTQ. 1 27.0 22.0 5.628337760869272E-7 1.4518020717335886E-5 0.0
/home/xiaowen/c_project/proteomics_cpp/testcases/data/st_no_digestion.msalign 1103 1559 2084 52 10 9229.073934898439 9229.012678342286 5168 gi|16765991|ref|NP_461606.1| 30S ribosomal subunit protein S16 [Salmonella typhimurium LT2] 9229.012678342286 1 82 .MVTIRLARHGAKKRPFYQVVVTDSRNARNGRFIERVGFFNPIASEKEEGTRLDLDRIAHWVGQGATISDRVAALIKEVKKAA. 0 9.0 9.0 7.882146059918802E-6 1.5764292119837604E-5 0.0
/home/xiaowen/c_project/proteomics_cpp/testcases/data/st_no_digestion.msalign 599 1007 1348 166 10 9966.889689273441 9966.838422971192 2906 gi|16764848|ref|NP_460463.1| putative periplasmic protein [Salmonella typhimurium LT2] 13009.40887661499 29 113 A.ETSKLVIESGDSAQSRQEAAMEKEQWNDTRSLRQKVNTRAEKEWDKADAAFDNRDKCEQSANINAYWEPNTLRCLDRRTGRVITP. 0 18.0 17.0 8.450250706186672E-7 1.6055476341754677E-5 0.0
/home/xiaowen/c_project/proteomics_cpp/testcases/data/st_no_digestion.msalign 1835 2615 3492 20 13 13985.377175570315 13985.277311520995 3710 gi|16765258|ref|NP_460873.1| chemotaxis regulator [Salmonella typhimurium LT2] 14116.317808347168 2 129 M.ADKELKFLVVDDFSTMRRIVRNLLKELGFNNVEEAEDGVDALNKLQAGGFGFIISDWNMPNMDGLELLKTIRADSAMSALPVLMVTAEAKKENIIAAAQAGASGYVVKPFTAATLEEKLNKIFEKLGM. 0 8.0 7.0 8.157099775585636E-6 1.6314199551171272E-5 0.0
/home/xiaowen/c_project/proteomics_cpp/testcases/data/st_no_digestion.msalign 630 1039 1391 190 19 11527.344483351562 11527.254483351564 6614 gi|39546367|ref|NP_462331.2| 30S ribosomal subunit protein S14 [Salmonella typhimurium LT2] 11113.053682523194 2 96 M.KAREVKRVALADKYFAKRAELK(A)[545.24]IISDVNATDEDRWNAVLKLQTLPRDSSPSRQRNRCRQTGRPHAFLRKFGLSRIKVREAAMRGEIPGLKKASW. 1 28.0 19.0 9.325961056402313E-6 1.723981992961357E-5 0.0
/home/xiaowen/c_project/proteomics_cpp/testcases/data/st_no_digestion.msalign 1232 1720 2299 26 12 11206.310409343752 11206.238477902833 6636 gi|16766727|ref|NP_462342.1| 50S ribosomal subunit protein L23 [Salmonella typhimurium LT2] 11206.238477902833 1 100 .MIREERLLKVLRAPHVSEKASTAMEKTNTIVLKVAKDATKAEIKAAVQKLFEVEVEVVNTLVVKGKVKRHGQRIGRRSDWKKAYVTLKEGQNLDFVGGAE. 0 9.0 7.0 8.967075048156258E-6 1.7934150096312517E-5 0.0
/home/xiaowen/c_project/proteomics_cpp/testcases/data/st_no_digestion.msalign 1859 2654 3544 12 15 12291.5837535 12291.470907407229 7986 gi|16767406|ref|NP_463021.1| 50S ribosomal subunit protein L7/L12 [Salmonella typhimurium LT2] 12291.470907407227 1 121 .MSITKDQIIEAVSAMSVMDVVELISAMEEKFGVSAAAAVAVAAGPAEAAEEKTEFDVILKAAGANKVAVIKAVRGATGLGLKEAKDLVESAPAALKEGVSKDDAEALKKSLEEAGAEVEVK. 0 7.0 6.0 9.227438133096243E-6 1.8454876266192487E-5 0.0
/home/xiaowen/c_project/proteomics_cpp/testcases/data/st_no_digestion.msalign 215 612 822 67 11 6348.573759988281 6348.573759988281 7204 gi|16767012|ref|NP_462627.1| 50S ribosomal subunit protein L33 [Salmonella typhimurium LT2] 6367.619703488769 1 55 .MA(K)[-19.05]GIREKIKLVSSAGTGHFYTTTKNKRTKPEKLELKKFDPVVRQHVIYKEAKIK. 1 10.0 9.0 3.475811124076884E-4 1.8461987970309517E-5 0.0
/home/xiaowen/c_project/proteomics_cpp/testcases/data/st_no_digestion.msalign 1387 1924 2571 52 19 15459.068504503908 15458.961076932374 3388 gi|16765095|ref|NP_460710.1| DNA-binding protein HLP-II [Salmonella typhimurium LT2] 15590.001573758545 2 137 M.SEALKILNNIRTLRAQARECTLETLEEMLEKLEVVVNERREEESAAAAEVEERTRKLQQYREMLIADGIDPNELLNSMAAAKSGTKAKRAARPAKYSYVDENGETKTWTGQGRTPAVIKKAMEEQGKQLEDFLIKE. 0 15.0 10.0 1.8786722613098423E-5 1.8786722613098423E-5 0.0
/home/xiaowen/c_project/proteomics_cpp/testcases/data/st_no_digestion.msalign 1139 1612 2155 66 17 12762.04114680469 12761.967558103028 6608 gi|16766713|ref|NP_462328.1| 50S ribosomal subunit protein L18 [Salmonella typhimurium LT2] 12761.967558103028 1 117 .MDKKSARIRRATRARRKLKELGATRLVVHRTPRHIYAQVIAPNGSEVLVAASTVEKAIAEQLKYTGNKDAAAAVGKAVAERALEKGIKDVSFDRSGFQYHGRVQALADAAREAGLQF. 0 13.0 9.0 1.081279253468765E-5 2.16255850693753E-5 0.0
/home/xiaowen/c_project/proteomics_cpp/testcases/data/st_no_digestion.msalign 1783 2484 3318 16 9 8095.1817426601565 8095.15341015381 4302 gi|16765556|ref|NP_461171.1| putative cytoplasmic protein [Salmonella typhimurium LT2] 8226.193906979981 2 75 M.PQLSRYSDEHVEQLLSELLSVLEKHKAPTDLSLMVLGNMVTNLINTSVAPAQRQAIANSFARALQSSISEDNAH. 0 7.0 5.0 2.362502848828717E-5 2.362502848828717E-5 0.0
/home/xiaowen/c_project/proteomics_cpp/testcases/data/st_no_digestion.msalign 877 1298 1736 70 17 10059.491944515627 10059.456944515627 6342 gi|16766581|ref|NP_462196.1| 30S ribosomal subunit protein S15 [Salmonella typhimurium LT2] 10191.46906109375 1 89 .MS(LSTEATAKIVSEFGRDANDTGSTDVQ)[-132.01]VALLTAQINHLQGHFAEHKKDHHSRRGLLRMVSQRRKLLDYLKRKDVARYTALIERLGLRR. 1 14.0 11.0 7.171492842229794E-5 2.3870652326962507E-5 0.0
/home/xiaowen/c_project/proteomics_cpp/testcases/data/st_no_digestion.msalign 183 570 766 78 11 6348.578459695313 6348.598459695312 7204 gi|16767012|ref|NP_462627.1| 50S ribosomal subunit protein L33 [Salmonella typhimurium LT2] 6367.619703488769 1 55 .(MAK)[-19.02]GIREKIKLVSSAGTGHFYTTTKNKRTKPEKLELKKFDPVVRQHVIYKEAKIK. 1 11.0 10.0 4.93274816518873E-4 2.620446639647726E-5 0.0
/home/xiaowen/c_project/proteomics_cpp/testcases/data/st_no_digestion.msalign 946 1369 1831 65 6 7264.683109546875 7264.683109546875 6494 gi|16766657|ref|NP_462272.1| putative periplasmic protein [Salmonella typhimurium LT2] 9528.873335080567 23 88 A.AVHQVNAEQA(Q)[-1.88]NLQPMGTISVSQIGSTPMD(MRQEIVAKAEKAGANSYRIIELKEGD)[1.95]NWHATAELYK. 2 23.0 20.0 1.4851502227059617E-8 2.6646415951075235E-5 0.0
/home/xiaowen/c_project/proteomics_cpp/testcases/data/st_no_digestion.msalign 1401 1942 2595 80 24 14957.405224343755 14957.307417111815 6602 gi|16766710|ref|NP_462325.1| 50S ribosomal subunit protein L15 [Salmonella typhimurium LT2] 14957.307417111817 1 144 .MRLNTLSPAEGSKKAGKRLGRGIGSGLGKTGGRGHKGQKSRSGGGVRRGFEGGQMPLYRRLPKFGFTSRKAAITAEVRLSDLAKVEGGVVDLNTLKAANIIGIQIEFAKVILAGEVTTPVTVRGLRVTKGARAAIEAAGGKIEE. 0 8.0 8.0 1.3333658568888992E-5 2.6667317137777984E-5 0.0
/home/xiaowen/c_project/proteomics_cpp/testcases/data/st_no_digestion.msalign 1715 2367 3162 61 15 11232.859931441406 11232.765684323731 6542 gi|16766680|ref|NP_462295.1| factor-for-inversion stimulation protein [Salmonella typhimurium LT2] 11232.765684323731 1 98 .MFEQRVNSDVLTVSTVNSQDQVTQKPLRDSVKQALKNYFAQLNGQDVNDLYELVLAEVEQPLLDMVMQYTRGNQTRAALMMGINRGTLRKKLKKYGMN. 0 8.0 8.0 1.3333965336545332E-5 2.6667930673090664E-5 0.0
/home/xiaowen/c_project/proteomics_cpp/testcases/data/st_no_digestion.msalign 160 547 735 75 12 6266.609894984377 6266.604894984377 7204 gi|16767012|ref|NP_462627.1| 50S ribosomal subunit protein L33 [Salmonella typhimurium LT2] 6367.619703488769 2 55 M.(A)[30.03]KGIREKIKLVSSAGTGHFYTTTKNKRTKPEKLELKKFDPVVRQHVIYKEAKIK. 1 9.0 8.0 4.164046950244024E-4 2.6767069540683233E-5 0.0
/home/xiaowen/c_project/proteomics_cpp/testcases/data/st_no_digestion.msalign 601 1009 1351 66 14 9966.895131171876 9966.838422971192 2906 gi|16764848|ref|NP_460463.1| putative periplasmic protein [Salmonella typhimurium LT2] 13009.40887661499 29 113 A.ETSKLVIESGDSAQSRQEAAMEKEQWNDTRSLRQKVNTRAEKEWDKADAAFDNRDKCEQSANINAYWEPNTLRCLDRRTGRVITP. 0 9.0 8.0 1.4143868253439129E-6 2.6873349681534344E-5 0.0
/home/xiaowen/c_project/proteomics_cpp/testcases/data/st_no_digestion.msalign 1292 1785 2386 74 15 11642.146338464843 11642.040060239258 8534 gi|16767685|ref|NP_463300.1| cytochrome b562 [Salmonella typhimurium LT2] 13903.336981015625 23 128 A.ADLEDNMDILNDNLKVVEKTDSAPELKAALTKMRAAALDAQKATPPKLEDKAPDSPEMKDFRHGFDILVGQIDGALKLANEGNVKEAKAAAEALKTTRNTYHKKYR. 0 14.0 12.0 8.167750606248112E-7 2.695357700061877E-5 0.0
/home/xiaowen/c_project/proteomics_cpp/testcases/data/st_no_digestion.msalign 1580 2183 2916 34 21 18177.834724175784 18177.729724175784 838 gi|16763815|ref|NP_459430.1| putative cytoplasmic protein [Salmonella typhimurium LT2] 19010.01853008789 8 169 M.PSFDIVSEVDLQEARNGVDNAVREVE(SRFDFRGVEATIELND)[1.09]ANKTIKVLSESDFQVNQLLDILRAKLLKRGIEGASLDVPDEFVHSGKTWYVEAKLKQGIESAVQKKIVKLIKDSKLKVQAQIQGEEIRVTGKSRDDLQSVMALVRGGDLGQPFQFKNFRD. 1 11.0 11.0 8.905322897552956E-7 3.001174879232541E-5 0.0
/home/xiaowen/c_project/proteomics_cpp/testcases/data/st_no_digestion.msalign 631 1040 1392 186 17 11526.341579296877 11526.326579296876 6614 gi|39546367|ref|NP_462331.2| 30S ribosomal subunit protein S14 [Salmonella typhimurium LT2] 11113.053682523194 2 96 M.KAREVKRVALAD(KYFAKRAELK)[544.31]AIISDVNATDEDRWNAVLKLQTLPRDSSPSRQRNRCRQTGRPHAFLRKFGLSRIKVREAAMRGEIPGLKKASW. 1 23.0 18.0 1.6930113106807258E-5 3.0868009382049835E-5 0.0
/home/xiaowen/c_project/proteomics_cpp/testcases/data/st_no_digestion.msalign 1152 1625 2172 29 8 8747.4886113125 8747.436094479981 3798 gi|16765304|ref|NP_460919.1| putative transcriptional regulator [Salmonella typhimurium LT2] 8747.436094479981 1 77 .MKNIVPDYRLDMVGEPCPYPAVATLEAMPQLKKGEILEVVSDCPQSINNIPLDARNHGYTVLDIQQDGPTIRYLIQK. 0 5.0 5.0 1.65639825625465E-5 3.3127965125093E-5 0.0
/home/xiaowen/c_project/proteomics_cpp/testcases/data/st_no_digestion.msalign 1592 2206 2947 34 14 11546.293103796874 11546.193456845704 6172 gi|39546361|ref|NP_462111.2| putative cytoplasmic protein [Salmonella typhimurium LT2] 11546.193456845704 1 99 .MIDPKKIEQIARQVHESMPKGIREFGEDIEKKIRQTLQSQLTRLDLVSREEFDVQTQVLLRTREKLALLEQRLSELEARDKPEEVKPAPAIPPVDPQQE. 0 8.0 7.0 1.176978488415279E-5 3.530935465245837E-5 0.0
/home/xiaowen/c_project/proteomics_cpp/testcases/data/st_no_digestion.msalign 1919 2808 3750 77 21 15024.870632859374 15024.768743710938 6346 gi|16766583|ref|NP_462198.1| ribosome-binding factor A [Salmonella typhimurium LT2] 15155.80924053711 2 133 M.AKEFGRPQRVAQEMQKEIAIILQREIKDPRLGMMTTVSGVEMSRDLAYAKVFVTFLNDKDEDAVKAGIKALQEASGFIRSLLGKAMRLRIVPELTFFYDNSLVEGMRMSNLVTNVVKHDEERRVNPDDSKED. 0 12.0 8.0 3.896555645709008E-5 3.896555645709008E-5 0.0
/home/xiaowen/c_project/proteomics_cpp/testcases/data/st_no_digestion.msalign 1382 1919 2564 37 16 11230.0562076875 11229.943952756348 2590 gi|16764690|ref|NP_460305.1| integration host factor alpha subunit [Salmonella typhimurium LT2] 11360.98444958252 2 99 M.ALTKAEMSEYLFDKLGLSKRDAKELVELFFEEIRRALENGEQVKLSGFGNFDLRDKNQRPGRNPKTGEDIPITARRVVTFRPGQKLKSRVENASPKEE. 0 7.0 6.0 3.9337002387906245E-5 3.9337002387906245E-5 0.0
/home/xiaowen/c_project/proteomics_cpp/testcases/data/st_no_digestion.msalign 1229 1717 2295 129 15 11206.311469527343 11206.238477902833 6636 gi|16766727|ref|NP_462342.1| 50S ribosomal subunit protein L23 [Salmonella typhimurium LT2] 11206.238477902833 1 100 .MIREERLLKVLRAPHVSEKASTAMEKTNTIVLKVAKDATKAEIKAAVQKLFEVEVEVVNTLVVKGKVKRHGQRIGRRSDWKKAYVTLKEGQNLDFVGGAE. 0 19.0 12.0 2.0316665187226437E-5 4.0633330374452874E-5 0.0
/home/xiaowen/c_project/proteomics_cpp/testcases/data/st_no_digestion.msalign 1143 1616 2160 86 15 12762.049412183593 12761.967558103028 6608 gi|16766713|ref|NP_462328.1| 50S ribosomal subunit protein L18 [Salmonella typhimurium LT2] 12761.967558103028 1 117 .MDKKSARIRRATRARRKLKELGATRLVVHRTPRHIYAQVIAPNGSEVLVAASTVEKAIAEQLKYTGNKDAAAAVGKAVAERALEKGIKDVSFDRSGFQYHGRVQALADAAREAGLQF. 0 11.0 9.0 2.150245023456847E-5 4.300490046913694E-5 0.0
/home/xiaowen/c_project/proteomics_cpp/testcases/data/st_no_digestion.msalign 514 921 1234 40 9 5288.947383707033 5288.937299924318 8022 gi|16767424|ref|NP_463039.1| DNA-binding protein HU-alpha [Salmonella typhimurium LT2] 9515.17277355713 41 90 D.AVQLVGFGTFKVNHRAERTGRNPQTGKEIKIAAANVPAFVSGKALKDAVK. 0 7.0 6.0 3.924977273090184E-6 4.317475000399203E-5 0.0
/home/xiaowen/c_project/proteomics_cpp/testcases/data/st_no_digestion.msalign 738 1154 1544 147 17 9518.347673929691 9518.289663510743 86 gi|16763433|ref|NP_459048.1| 30S ribosomal subunit protein S20 [Salmonella typhimurium LT2] 9649.330160336915 2 87 M.ANIKSAKKRAVQSEKARKHNASRRSMMRTFIKKVYAAIEAGDKAAALKAFNEMQPIVDRQAAKGLIHKNKAARHKANLTAQINKLA. 0 19.0 10.0 4.46917058261816E-5 4.46917058261816E-5 0.0
/home/xiaowen/c_project/proteomics_cpp/testcases/data/st_no_digestion.msalign 1390 1929 2578 23 17 15459.091174179692 15458.961076932372 3388 gi|16765095|ref|NP_460710.1| DNA-binding protein HLP-II [Salmonella typhimurium LT2] 15590.001573758545 2 137 M.SEALKILNNIRTLRAQARECTLETLEEMLEKLEVVVNERREEESAAAAEVEERTRKLQQYREMLIADGIDPNELLNSMAAAKSGTKAKRAARPAKYSYVDENGETKTWTGQGRTPAVIKKAMEEQGKQLEDFLIKE. 0 6.0 6.0 4.5357763537281916E-5 4.5357763537281916E-5 0.0
/home/xiaowen/c_project/proteomics_cpp/testcases/data/st_no_digestion.msalign 85 461 620 18 8 11136.831227562501 11136.831227562501 1452 gi|16764124|ref|NP_459739.1| hypothetical protein STM0759 [Salmonella typhimurium LT2] 13436.224081235352 1 128 .(MKMT)[42.01](KLTTLLLTATLGLASGAALAAESNAQSSNGQANSAANAGQVAPD)[-2341.40]ARQNVAPNDVNNNDINTNGNTNSTMQHPDGSTMNHDGMTKDEEHKNTMCKDGRCPDINKKVETGNGVNNDVNTKTDGTTQ. 1 8.0 7.0 5.773637079388871E-6 4.53648027367189E-5 0.0
/home/xiaowen/c_project/proteomics_cpp/testcases/data/st_no_digestion.msalign 1683 2315 3092 131 22 17715.538548710945 17715.418695645752 7984 gi|16767405|ref|NP_463020.1| 50S ribosomal subunit protein L10 [Salmonella typhimurium LT2] 17846.459192471924 2 165 M.ALNLQDKQAIVAEVSEVAKGALSAVVADSRGVTVDKMTELRKAGREAGVYMRVVRNTLLRRVVEGTQFECLKDTFVGPTLIAYSMEHPGAAARLFKEFAKANAKFEVKAAAFEGELIPASQIDRLATLPTYEEAIARLMATMKEASAGKLVRTLAAVRDAKEAA. 0 18.0 12.0 4.642412522278905E-5 4.642412522278905E-5 0.0
/home/xiaowen/c_project/proteomics_cpp/testcases/data/st_no_digestion.msalign 623 1032 1382 182 16 11526.337380687499 11526.3123806875 6614 gi|39546367|ref|NP_462331.2| 30S ribosomal subunit protein S14 [Salmonella typhimurium LT2] 11113.053682523194 1 96 .(M)[42.01](KAREVKRVALADKYFAKRAELKAI)[371.25]ISDVNATDEDRWNAVLKLQTLPRDSSPSRQRNRCRQTGRPHAFLRKFGLSRIKVREAAMRGEIPGLKKASW. 1 23.0 18.0 3.3340942143939236E-5 4.728051108885992E-5 0.0
/home/xiaowen/c_project/proteomics_cpp/testcases/data/st_no_digestion.msalign 328 728 976 20 10 7210.282188374999 7210.254739957275 2582 gi|16764686|ref|NP_460301.1| 50S ribosomal subunit protein L35 [Salmonella typhimurium LT2] 7341.295236783447 2 65 M.PKIKTVRGAAKRFKKTGKGGFKHKHANLRHILTKKATKRKRHLRPKAMVSKGDLGLVIACLPYA. 0 5.0 4.0 4.978820893752963E-5 4.978820893752963E-5 0.0
/home/xiaowen/c_project/proteomics_cpp/testcases/data/st_no_digestion.msalign 1150 1623 2170 106 16 12762.051474562499 12761.967558103028 6608 gi|16766713|ref|NP_462328.1| 50S ribosomal subunit protein L18 [Salmonella typhimurium LT2] 12761.967558103028 1 117 .MDKKSARIRRATRARRKLKELGATRLVVHRTPRHIYAQVIAPNGSEVLVAASTVEKAIAEQLKYTGNKDAAAAVGKAVAERALEKGIKDVSFDRSGFQYHGRVQALADAAREAGLQF. 0 16.0 11.0 2.5112467087057555E-5 5.022493417411511E-5 0.0
/home/xiaowen/c_project/proteomics_cpp/testcases/data/st_no_digestion.msalign 1211 1697 2268 12 11 9782.884054187502 9782.813444333497 4144 gi|16765477|ref|NP_461092.1| putative periplasmic protein [Salmonella typhimurium LT2] 11884.955469327393 20 104 A.APATTGIDQYELKSFIADFTHFKPGDTVPQMYRTDEYNIKQWKLRNLPAPDAGTHWTYMGGAYVLINDTDGKIIKAYDGEIFYHR. 0 7.0 5.0 1.815822863865747E-6 5.084304018824091E-5 0.0
/home/xiaowen/c_project/proteomics_cpp/testcases/data/st_no_digestion.msalign 806 1223 1636 56 8 6392.611871374999 6392.611871374999 6604 gi|16766711|ref|NP_462326.1| 50S ribosomal subunit protein L30 [Salmonella typhimurium LT2] 6509.614042478027 2 59 M.AKTIKITQTRSAIGRLPKHKATLLGLGLRRIGHTVEREDTPAVRGMVNAVSFMV(KV)[14.04]EE. 1 12.0 11.0 3.464003769183873E-4 5.145975337989798E-5 0.0
/home/xiaowen/c_project/proteomics_cpp/testcases/data/st_no_digestion.msalign 1362 1893 2530 23 21 17503.464964093757 17503.297346311036 6606 gi|16766712|ref|NP_462327.1| 30S ribosomal subunit protein S5 [Salmonella typhimurium LT2] 17592.32727642578 2 167 M.(A)[42.01]HIEKQAGELQEKLIAVNRVSKTVKGGRIFSFTALTVVGDGNGRVGFGYGKAREVPAAIQKAMEKARRNMINVALNNGTLQHPVKGVHTGSRVFMQPASEGTGIIAGGAMRAVLEVAGVHNVLAKAYGSTNPINVVRATIDGLENMNSPEMVAAKRGKSVEEILGK. 0 6.0 5.0 5.882962298854169E-5 5.882962298854169E-5 0.0
/home/xiaowen/c_project/proteomics_cpp/testcases/data/st_no_digestion.msalign 142 529 711 37 4 3075.304739640625 3075.2924787573284 1850 gi|16764321|ref|NP_459936.1| cell division protein [Salmonella typhimurium LT2] 148381.19957180542 212 236 W.VDDEEYDDEYDEETDGVQRESRRAR.I 0 9.0 7.0 2.491794553380155E-8 5.892305045047879E-5 0.0
/home/xiaowen/c_project/proteomics_cpp/testcases/data/st_no_digestion.msalign 347 747 1002 19 10 7210.262046773437 7210.254739957275 2582 gi|16764686|ref|NP_460301.1| 50S ribosomal subunit protein L35 [Salmonella typhimurium LT2] 7341.295236783447 2 65 M.PKIKTVRGAAKRFKKTGKGGFKHKHANLRHILTKKATKRKRHLRPKAMVSKGDLGLVIACLPYA. 0 5.0 4.0 5.992002202457981E-5 5.992002202457981E-5 0.0
/home/xiaowen/c_project/proteomics_cpp/testcases/data/st_no_digestion.msalign 937 1360 1819 10 8 7264.66050090625 7264.61311932129 6494 gi|16766657|ref|NP_462272.1| putative periplasmic protein [Salmonella typhimurium LT2] 9528.873335080567 23 88 A.AVHQVNAEQAQNLQPMGTISVSQIGSTPMDMRQEIVAKAEKAGANSYRIIELKEGDNWHATAELYK. 0 6.0 5.0 1.7459606566329611E-6 6.110862298215364E-5 0.0
/home/xiaowen/c_project/proteomics_cpp/testcases/data/st_no_digestion.msalign 1706 2351 3140 50 15 11232.847114058593 11232.765684323731 6542 gi|16766680|ref|NP_462295.1| factor-for-inversion stimulation protein [Salmonella typhimurium LT2] 11232.765684323731 1 98 .MFEQRVNSDVLTVSTVNSQDQVTQKPLRDSVKQALKNYFAQLNGQDVNDLYELVLAEVEQPLLDMVMQYTRGNQTRAALMMGINRGTLRKKLKKYGMN. 0 12.0 8.0 3.0932526292821194E-5 6.186505258564239E-5 0.0
/home/xiaowen/c_project/proteomics_cpp/testcases/data/st_no_digestion.msalign 1411 1953 2610 18 10 9113.770637171878 9113.737188535157 4692 gi|16765751|ref|NP_461366.1| phosphohistidinoprotein-hexose phosphotransferase [Salmonella typhimurium LT2] 9113.737188535157 1 85 .MFQQEVTITAPNGLHTRPAAQFVKEAKGFTSEITVTSNGKSASAKSLFKLQTLGLTQGTVVTISAEGEDEQKAVEHLVKLMAELE. 0 5.0 5.0 3.1835337892768164E-5 6.367067578553633E-5 0.0
/home/xiaowen/c_project/proteomics_cpp/testcases/data/st_no_digestion.msalign 127 512 688 35 7 4078.237799207032 4078.2187406591793 2302 gi|16764546|ref|NP_460161.1| 50S ribosomal subunit protein L32 [Salmonella typhimurium LT2] 6442.431486325683 21 57 D.ALTAVTSLSVDKTSGEKHLRHHITADGYYRGRKVIAK. 0 8.0 6.0 4.272255936420375E-6 6.408383904630562E-5 0.0
/home/xiaowen/c_project/proteomics_cpp/testcases/data/st_no_digestion.msalign 13 385 519 88 8 5377.085671187499 5377.076475339355 7424 gi|16767124|ref|NP_462739.1| 50S ribosomal subunit protein L34 [Salmonella typhimurium LT2] 5377.076475339355 1 46 .MKRTFQPSVLKRNRSHGFRARMATKNGRQVLARRRAKGRARLTVSK. 0 8.0 8.0 3.28122512902859E-5 6.56245025805718E-5 0.0
/home/xiaowen/c_project/proteomics_cpp/testcases/data/st_no_digestion.msalign 1745 2414 3224 12 12 13493.19158840625 13493.076029019776 8572 gi|16767703|ref|NP_463318.1| putative translation initiation inhibitor [Salmonella typhimurium LT2] 13624.116525845948 2 128 M.SKTIATENAPAAIGPYVQGVDLGSMVITSGQIPVDPKTGAVAEDVSAQARQSLENVKAIVEAAGLKVGDIVKTTVFVKDLNDFATVNATYEAFFTEHNATFPARSCVEVARLPKDVKIEIEAIAVRR. 0 4.0 4.0 6.627144939616353E-5 6.627144939616353E-5 0.0
/home/xiaowen/c_project/proteomics_cpp/testcases/data/st_no_digestion.msalign 628 1037 1388 188 21 11527.335668656251 11527.31566865625 6614 gi|39546367|ref|NP_462331.2| 30S ribosomal subunit protein S14 [Salmonella typhimurium LT2] 11113.053682523194 2 96 M.KAREVKRVALAD(K)[545.30]YFAKRAELKAIISDVNATDEDRWNAVLKLQTLPRDSSPSRQRNRCRQTGRPHAFLRKFGLSRIKVREAAMRGEIPGLKKASW. 1 27.0 18.0 3.7414950078868915E-5 6.91646681917428E-5 0.0
/home/xiaowen/c_project/proteomics_cpp/testcases/data/st_no_digestion.msalign 314 714 958 108 16 8517.6706916875 8517.6456916875 6198 gi|16766509|ref|NP_462124.1| 30S ribosomal subunit protein S21 [Salmonella typhimurium LT2] 8551.747667508545 2 71 M.PVIKVRENEPFDVALRRFKRSCEKAGVLAE(VRRR)[96.94]EFYEKPTTERKRAKASAVKRHAKKLARENARRTRLY. 1 13.0 11.0 3.8219215983094926E-4 7.004278715607007E-5 0.0
/home/xiaowen/c_project/proteomics_cpp/testcases/data/st_no_digestion.msalign 1917 2805 3746 22 19 15861.200210812502 15861.200210812502 6346 gi|16766583|ref|NP_462198.1| ribosome-binding factor A [Salmonella typhimurium LT2] 15155.80924053711 2 133 M.AKEFGRPQRVAQEMQKEIAIILQREI(KD)[836.43]PRLGMMTTVSGVEMSRDLAYAKVFVTFLNDKDEDAVKAGIKALQEASGFIRSLLGKAMRLRIVPELTFFYDNSLVEGMRMSNLVTNVVKHDEERRVNPDDSKED. 1 8.0 8.0 1.7290915697672014E-5 7.114305622063955E-5 0.0
/home/xiaowen/c_project/proteomics_cpp/testcases/data/st_no_digestion.msalign 884 1305 1746 71 16 10060.481398249998 10060.428564267579 6342 gi|16766581|ref|NP_462196.1| 30S ribosomal subunit protein S15 [Salmonella typhimurium LT2] 10191.46906109375 2 89 M.SLSTEATAKIVSEFGRDANDTGSTDVQVALLTAQINHLQGHFAEHKKDHHSRRGLLRMVSQRRKLLDYLKRKDVARYTALIERLGLRR. 0 11.0 7.0 7.640392947828664E-5 7.640392947828664E-5 0.0
/home/xiaowen/c_project/proteomics_cpp/testcases/data/st_no_digestion.msalign 1496 2073 2770 40 7 8375.36170896875 8375.250936704102 2828 gi|39546317|ref|NP_460424.2| putative cytoplasmic protein [Salmonella typhimurium LT2] 9025.52433605713 6 76 Y.MTVQDYLLKFRKISSLESLEKLFDHLNYTLTDDMDIVNMYRAADHRRAELVSGGRLFDVGQVPQSVWRYVQ. 0 9.0 9.0 1.6436720053704994E-6 8.218360026852497E-5 0.0
/home/xiaowen/c_project/proteomics_cpp/testcases/data/st_no_digestion.msalign 1344 1863 2490 81 20 13079.341128218752 13079.289797025147 6596 gi|16766707|ref|NP_462322.1| 30S ribosomal subunit protein S13 [Salmonella typhimurium LT2] 13210.330293851319 2 118 M.ARIAGINIPDQKHAVIALTSIYGVGKTRSKAILAAAGIAENVKISELSEEQIDTLRDEVAKFVVEGDLRREISMSIKRLMDLGCYRGLRHRRGLPVRGQRTKTNARTRKGPRKPIKK. 0 10.0 7.0 8.346239600184246E-5 8.346239600184246E-5 0.0
/home/xiaowen/c_project/proteomics_cpp/testcases/data/st_no_digestion.msalign 875 1295 1732 61 15 10060.497707453123 10060.428564267579 6342 gi|16766581|ref|NP_462196.1| 30S ribosomal subunit protein S15 [Salmonella typhimurium LT2] 10191.46906109375 2 89 M.SLSTEATAKIVSEFGRDANDTGSTDVQVALLTAQINHLQGHFAEHKKDHHSRRGLLRMVSQRRKLLDYLKRKDVARYTALIERLGLRR. 0 10.0 7.0 8.604045366228846E-5 8.604045366228846E-5 0.0
/home/xiaowen/c_project/proteomics_cpp/testcases/data/st_no_digestion.msalign 1812 2582 3448 18 9 12217.493875578124 12217.493875578124 7986 gi|16767406|ref|NP_463021.1| 50S ribosomal subunit protein L7/L12 [Salmonella typhimurium LT2] 12291.470907407227 2 121 M.SITKDQIIEAV(SAMSVMDVVELISAMEEKFGVSAAAA)[57.06]VAVAAGPAEAAEEKTEFDVILKAAGANKVAVIKAVRGATGLGLKEAKDLVESAPAALKEGVSKDDAEALKKSLEEAGAEVEVK. 1 9.0 7.0 3.8022369245708045E-4 9.321052158283759E-5 0.0
/home/xiaowen/c_project/proteomics_cpp/testcases/data/st_no_digestion.msalign 1193 1673 2236 53 9 7272.039699515626 7272.039699515626 6624 gi|16766721|ref|NP_462336.1| 50S ribosomal subunit protein L29 [Salmonella typhimurium LT2] 7255.987646298828 1 63 .MKAKELREKSVEELNTELL(NLLREQFNLRMQA)[16.05]ASGQLQQSHLLKQVRRDVARVKTLLTEKAGA. 1 14.0 12.0 2.3873929726871495E-4 9.638405117639283E-5 0.0
/home/xiaowen/c_project/proteomics_cpp/testcases/data/st_no_digestion.msalign 873 1293 1730 31 14 10060.482522515624 10060.428564267579 6342 gi|16766581|ref|NP_462196.1| 30S ribosomal subunit protein S15 [Salmonella typhimurium LT2] 10191.46906109375 2 89 M.SLSTEATAKIVSEFGRDANDTGSTDVQVALLTAQINHLQGHFAEHKKDHHSRRGLLRMVSQRRKLLDYLKRKDVARYTALIERLGLRR. 0 6.0 6.0 9.855287782388232E-5 9.855287782388232E-5 0.0
/home/xiaowen/c_project/proteomics_cpp/testcases/data/st_no_digestion.msalign 1360 1889 2524 105 23 17501.350314437506 17501.255314437505 6606 gi|16766712|ref|NP_462327.1| 30S ribosomal subunit protein S5 [Salmonella typhimurium LT2] 17592.32727642578 2 167 M.(AHIEKQAGELQEKLIAVNRVSKTVKGGRIFSFTAL)[42.01]T(VVGDGNGRVGFGYGKAREVPAAI)[-2.04]QKAMEKARRNMINVALNNGTLQHPVKGVHTGSRVFMQPASEGTGIIAGGAMRAVLEVAGVHNVLAKAYGSTNPINVVRATIDGLENMNSPEMVAAKRGKSVEEILGK. 1 16.0 13.0 2.9503428216577594E-4 9.966946082916222E-5 0.0
/home/xiaowen/c_project/proteomics_cpp/testcases/data/st_no_digestion.msalign 1376 1908 2550 87 25 17503.37574046485 17503.297346311036 6606 gi|16766712|ref|NP_462327.1| 30S ribosomal subunit protein S5 [Salmonella typhimurium LT2] 17592.32727642578 2 167 M.(A)[42.01]HIEKQAGELQEKLIAVNRVSKTVKGGRIFSFTALTVVGDGNGRVGFGYGKAREVPAAIQKAMEKARRNMINVALNNGTLQHPVKGVHTGSRVFMQPASEGTGIIAGGAMRAVLEVAGVHNVLAKAYGSTNPINVVRATIDGLENMNSPEMVAAKRGKSVEEILGK. 0 8.0 8.0 9.987635865238451E-5 9.987635865238451E-5 0.0
/home/xiaowen/c_project/proteomics_cpp/testcases/data/st_no_digestion.msalign 1751 2425 3239 12 10 13493.156824000002 13493.076029019776 8572 gi|16767703|ref|NP_463318.1| putative translation initiation inhibitor [Salmonella typhimurium LT2] 13624.116525845948 2 128 M.SKTIATENAPAAIGPYVQGVDLGSMVITSGQIPVDPKTGAVAEDVSAQARQSLENVKAIVEAAGLKVGDIVKTTVFVKDLNDFATVNATYEAFFTEHNATFPARSCVEVARLPKDVKIEIEAIAVRR. 0 4.0 4.0 1.0290220431444585E-4 1.0290220431444585E-4 0.0
/home/xiaowen/c_project/proteomics_cpp/testcases/data/st_no_digestion.msalign 665 1080 1446 54 18 8970.92253217969 8970.880617337647 7206 gi|16767013|ref|NP_462628.1| 50S ribosomal subunit protein L28 [Salmonella typhimurium LT2] 9101.921114163819 2 78 M.SRVCQVTGKRPVTGNNRSHALNATKRRFLPNLHSHRFWVESEKRFVTLRVSAKGMRIIDKKGIETVLSELRARGEKY. 0 7.0 6.0 1.0839437219062616E-4 1.0839437219062616E-4 0.0
/home/xiaowen/c_project/proteomics_cpp/testcases/data/st_no_digestion.msalign 1805 2554 3411 20 14 15998.610811390627 15998.482710080565 802 gi|16763797|ref|NP_459412.1| riboflavin synthase beta chain [Salmonella typhimurium LT2] 15998.482710080567 1 156 .MNIIKANVAAPDARVAITIARFNQFINDSLLDGAVDALTRIGQVKDDNITVVWVPGAYELPLATEALAKSGKYDAVVALGTVIRGGTAHFEYVAGGASNGLASVAQDSGVPVAFGVLTTESIEQAIERAGTKAGNKGAEAALTALEMINVLKAIKA. 0 8.0 5.0 6.0131585915914E-5 1.20263171831828E-4 0.0
/home/xiaowen/c_project/proteomics_cpp/testcases/data/st_no_digestion.msalign 816 1233 1650 40 11 8339.088770519535 8339.088770519535 8154 gi|16767490|ref|NP_463105.1| putative cytoplasmic protein [Salmonella typhimurium LT2] 8454.089437680665 2 70 M.(MNKDEAGGNWKQFKGKMKEQWGKLTDDDMTV)[16.04]IEGKRDQLVGKIQERYGYQKDQAEKEVVDWETRNNYRW. 1 7.0 7.0 3.77509798813693E-4 1.2385949961077726E-4 0.0
/home/xiaowen/c_project/proteomics_cpp/testcases/data/st_no_digestion.msalign 1308 1807 2415 104 16 10613.600743875 10613.600743875 1892 gi|16764342|ref|NP_459957.1| integration host factor beta subunit [Salmonella typhimurium LT2] 10614.512960629883 1 94 .(M)[-.91]TKSELIERLATQQSHIPAKAVEDAVKEMLEHMASTLAQGERIEIRGFGSFSLHYRAPRTGRNPKTGDKVELEGKYVPHFKPGKELRDRANIYG. 1 12.0 12.0 7.298448687569781E-4 1.2652612575966105E-4 0.0
/home/xiaowen/c_project/proteomics_cpp/testcases/data/st_no_digestion.msalign 1102 1557 2082 69 10 9229.073934898439 9229.012678342286 5168 gi|16765991|ref|NP_461606.1| 30S ribosomal subunit protein S16 [Salmonella typhimurium LT2] 9229.012678342286 1 82 .MVTIRLARHGAKKRPFYQVVVTDSRNARNGRFIERVGFFNPIASEKEEGTRLDLDRIAHWVGQGATISDRVAALIKEVKKAA. 0 8.0 8.0 6.453514523264109E-5 1.2907029046528218E-4 0.0
/home/xiaowen/c_project/proteomics_cpp/testcases/data/st_no_digestion.msalign 1833 2609 3484 14 12 12863.55467465625 12863.466947751465 5722 gi|16766271|ref|NP_461886.1| putative cytoplasmic protein [Salmonella typhimurium LT2] 12863.466947751465 1 109 .MTTHDRVRQQLHTLETLLREHRHWRQDAPQAHLFTSTQPFFMDTMEPLEWLQWVLIPRMHTLLDNAQPLPEAFAVAPYYEMALAADHPQRETILAVLQDLDALFARDKS. 0 5.0 4.0 6.624854862771956E-5 1.324970972554391E-4 0.0
/home/xiaowen/c_project/proteomics_cpp/testcases/data/st_no_digestion.msalign 1738 2396 3200 32 15 11782.254011515624 11782.113416867676 7558 gi|16767191|ref|NP_462806.1| thioredoxin 1 [Salmonella typhimurium LT2] 11913.153913693848 2 109 M.SDKIIHLTDDSFDTDVLKADGAILVDFWAEWCGPCKMIAPILDEIADEYQGKLTVAKLNIDQNPGTAPKYGIRGIPTLLLFKNGEVAATKVGALSKGQLKEFLDANLA. 0 6.0 6.0 1.3683593515798317E-4 1.3683593515798317E-4 0.0
/home/xiaowen/c_project/proteomics_cpp/testcases/data/st_no_digestion.msalign 325 725 972 59 11 8518.706156160159 8518.706156160159 6198 gi|16766509|ref|NP_462124.1| 30S ribosomal subunit protein S21 [Salmonella typhimurium LT2] 8551.747667508545 1 71 .(MPV)[-33.04]IKVRENEPFDVALRRFKRSCEKAGVLAEVRRREFYEKPTTERKRAKASAVKRHAKKLARENARRTRLY. 1 10.0 9.0 0.0010659062408090562 1.369863796555977E-4 0.0
/home/xiaowen/c_project/proteomics_cpp/testcases/data/st_no_digestion.msalign 822 1240 1659 30 12 10657.609093921878 10657.609093921878 3628 gi|16765217|ref|NP_460832.1| putative copper resistance protein [Salmonella typhimurium LT2] 13312.989523129883 27 124 A.HAHLTHQYPAANAAV(TASPQALTLNF)[-.94]SEGIEPGFSGATITGPQQELIKTRPAKRNEQDKTQLIIPLEQPLKSGAYTVDWHVVSVDGHKTKGKYTFSVK. 1 12.0 11.0 5.818327097980221E-6 1.3830064497967983E-4 0.0
/home/xiaowen/c_project/proteomics_cpp/testcases/data/st_no_digestion.msalign 553 960 1286 52 5 4274.242445511721 4274.226270871578 2072 gi|16764429|ref|NP_460044.1| putative hydrogenase membrane component precurosr [Salmonella typhimurium LT2] 37605.86566753906 313 350 G.NTCDNVKPRAALIDCLAPDRRVEIEVKGVKDVVTQPQA. 0 10.0 9.0 3.779810271380541E-6 1.474126005838411E-4 0.0
/home/xiaowen/c_project/proteomics_cpp/testcases/data/st_no_digestion.msalign 1428 1973 2636 42 12 16293.836838031251 16293.836838031251 1592 gi|16764195|ref|NP_459810.1| outer membrane protease precursor [Salmonella typhimurium LT2] 18539.917421536866 24 171 A.(ATSTVTGGYAQSDAQGVANKMSGFNLKYRYEQDDNPL)[-.85]GVIGSFTYTEKDRTNGAGDYNKGQYYGITAGPAYRLNDWASIYGVVGVGYGKFQTTDYPTYKHDTSDYGFSYGAGLQFNPMENVALDFSYEQSRIRSVDVGTWIAGVGYRF. 1 12.0 11.0 4.8437888023048725E-6 1.569859406031889E-4 0.0
/home/xiaowen/c_project/proteomics_cpp/testcases/data/st_no_digestion.msalign 216 613 823 27 10 4930.724773640625 4930.70897503418 6376 gi|16766598|ref|NP_462213.1| 50S ribosomal subunit protein L27 [Salmonella typhimurium LT2] 9175.939195828858 2 48 M.AHKKAGGSTRNGRDSEAKRLGVKRFGGEAVLAGSIIVRQRGTKFHAG.T 0 11.0 8.0 3.71901009365883E-6 1.5991743402732968E-4 0.0
/home/xiaowen/c_project/proteomics_cpp/testcases/data/st_no_digestion.msalign 1803 2551 3407 24 14 15997.643526234377 15997.538526234377 802 gi|16763797|ref|NP_459412.1| riboflavin synthase beta chain [Salmonella typhimurium LT2] 15998.482710080567 1 156 .MNIIKANVAAPDARVAITIARFNQFINDSLLDGAVDALTRIGQVKDDNITVVWVPGAYELPLATEALAKSGKYDAVVALGTVIRGGTAHFEYVAGGASNGLASVAQDS(GV)[-.94]PVAFGVLTTESIEQAIERAGTKAGNKGAEAALTALEMINVLKAIKA. 1 11.0 9.0 5.102680298693586E-4 1.6402177100885708E-4 0.0
/home/xiaowen/c_project/proteomics_cpp/testcases/data/st_no_digestion.msalign 797 1214 1624 28 9 8138.216837875 8138.216837875 162 gi|16763472|ref|NP_459087.1| putative secreted protein [Salmonella typhimurium LT2] 10296.443510251465 22 96 A.AEQVSKQEISHFKLVKVGTINVSQSGGQI(SSPSDLREKLSELADAKGGKYYHIIAAREHGPNFEA)[-.96]VAEVYNDATK. 1 13.0 12.0 8.90327814619501E-6 1.7762155395321938E-4 0.0
/home/xiaowen/c_project/proteomics_cpp/testcases/data/st_no_digestion.msalign 123 508 683 91 10 6326.401408523438 6326.401408523438 2302 gi|16764546|ref|NP_460161.1| 50S ribosomal subunit protein L32 [Salmonella typhimurium LT2] 6442.431486325683 1 57 .MA(VQQNKPT)[-116.03]RSKRGMRRSHDALTAVTSLSVDKTSGEKHLRHHITADGYYRGRKVIAK. 1 11.0 9.0 0.0017107265907892846 1.8690486313674862E-4 0.0
/home/xiaowen/c_project/proteomics_cpp/testcases/data/st_no_digestion.msalign 2005 3165 4226 154 20 13357.686141781249 13357.631246762698 2584 gi|16764687|ref|NP_460302.1| 50S ribosomal subunit protein L20 [Salmonella typhimurium LT2] 13488.671743588868 2 118 M.ARVKRGVIARARHKKILKQAKGYYGARSRVYRVAFQAVIKAGQYAYRDRRQRKRQFRQLWIARINAAARQNGISYSKFINGLKKASVEIDRKILADIAVFDKVAFTALVEKAKAALA. 0 12.0 10.0 1.8756438432418368E-4 1.8756438432418368E-4 0.0
/home/xiaowen/c_project/proteomics_cpp/testcases/data/st_no_digestion.msalign 983 1413 1890 143 18 14441.764311960938 14441.664311960938 6588 gi|16766703|ref|NP_462318.1| 50S ribosomal subunit protein L17 [Salmonella typhimurium LT2] 14442.689371304932 1 127 .MRHRKSGRQLNRNSSHRQAMFRNMAGSLVRHE(IIKTTLPKAKELRRVVE)[-1.03]PLITLAKTDSVANRRLAFARTRDNEIVAKLFNELGPRFASRAGGYTRILKCGFRAGDNAPMAYIELVDRSEKTEAAAE. 1 18.0 15.0 6.668820710274058E-4 1.9414091664497188E-4 0.0
/home/xiaowen/c_project/proteomics_cpp/testcases/data/st_no_digestion.msalign 703 1118 1496 101 5 6377.577309890625 6377.577309890625 6604 gi|16766711|ref|NP_462326.1| 50S ribosomal subunit protein L30 [Salmonella typhimurium LT2] 6509.614042478027 2 59 M.AKTIKITQTRSAIGRLPKHKATLLGLGLRRIGHTVEREDTPAVRGMVNAVSFMVKV(EE)[-1.00]. 1 13.0 11.0 0.0038449751203608077 2.0275515975056992E-4 0.0
/home/xiaowen/c_project/proteomics_cpp/testcases/data/st_no_digestion.msalign 358 760 1019 133 13 9044.935769855469 9044.898699002686 6376 gi|16766598|ref|NP_462213.1| 50S ribosomal subunit protein L27 [Salmonella typhimurium LT2] 9175.939195828858 2 85 M.AHKKAGGSTRNGRDSEAKRLGVKRFGGEAVLAGSIIVRQRGTKFHAGTNVGCGRDHTLFAKADGKVKFEVKGPKNRKYISIVAE. 0 13.0 11.0 2.07012709856605E-4 2.07012709856605E-4 0.0
/home/xiaowen/c_project/proteomics_cpp/testcases/data/st_no_digestion.msalign 711 1126 1507 19 7 6509.6371661875 6509.614042478027 6604 gi|16766711|ref|NP_462326.1| 50S ribosomal subunit protein L30 [Salmonella typhimurium LT2] 6509.614042478027 1 59 .MAKTIKITQTRSAIGRLPKHKATLLGLGLRRIGHTVEREDTPAVRGMVNAVSFMVKVEE. 0 6.0 5.0 1.0361470901107689E-4 2.0722941802215377E-4 0.0
/home/xiaowen/c_project/proteomics_cpp/testcases/data/st_no_digestion.msalign 1186 1666 2227 30 8 7272.03159465625 7272.021594656249 6624 gi|16766721|ref|NP_462336.1| 50S ribosomal subunit protein L29 [Salmonella typhimurium LT2] 7255.987646298828 1 63 .MKAKELREKSVEEL(NTELLNLLREQFNLRMQAASGQLQQS)[16.03]HLLKQVRRDVARVKTLLTEKAGA. 1 10.0 10.0 5.380734203668002E-4 2.162258004066586E-4 0.0
/home/xiaowen/c_project/proteomics_cpp/testcases/data/st_no_digestion.msalign 605 1013 1356 23 12 8842.415541000002 8842.415541000002 3420 gi|16765111|ref|NP_460726.1| cation transport regulator [Salmonella typhimurium LT2] 8943.40267010254 2 76 M.PYKAKSDLPDNVRNVLPAHAQDIYKEAFNSAWEQYKDKADRRD(DASREETAHKVAWAAVKNDYEKGED)[30.05]DKWHKKK. 1 8.0 8.0 9.321220430443351E-4 2.2216891915781292E-4 0.0
/home/xiaowen/c_project/proteomics_cpp/testcases/data/st_no_digestion.msalign 1717 2369 3164 54 13 11232.848360394531 11232.765684323731 6542 gi|16766680|ref|NP_462295.1| factor-for-inversion stimulation protein [Salmonella typhimurium LT2] 11232.765684323731 1 98 .MFEQRVNSDVLTVSTVNSQDQVTQKPLRDSVKQALKNYFAQLNGQDVNDLYELVLAEVEQPLLDMVMQYTRGNQTRAALMMGINRGTLRKKLKKYGMN. 0 8.0 7.0 1.140479442148103E-4 2.280958884296206E-4 0.0
/home/xiaowen/c_project/proteomics_cpp/testcases/data/st_no_digestion.msalign 1700 2345 3132 23 12 11232.843124187502 11232.765684323731 6542 gi|16766680|ref|NP_462295.1| factor-for-inversion stimulation protein [Salmonella typhimurium LT2] 11232.765684323731 1 98 .MFEQRVNSDVLTVSTVNSQDQVTQKPLRDSVKQALKNYFAQLNGQDVNDLYELVLAEVEQPLLDMVMQYTRGNQTRAALMMGINRGTLRKKLKKYGMN. 0 8.0 5.0 1.1833329894839442E-4 2.3666659789678884E-4 0.0
/home/xiaowen/c_project/proteomics_cpp/testcases/data/st_no_digestion.msalign 1147 1620 2166 109 19 12762.04801814453 12761.967558103028 6608 gi|16766713|ref|NP_462328.1| 50S ribosomal subunit protein L18 [Salmonella typhimurium LT2] 12761.967558103028 1 117 .MDKKSARIRRATRARRKLKELGATRLVVHRTPRHIYAQVIAPNGSEVLVAASTVEKAIAEQLKYTGNKDAAAAVGKAVAERALEKGIKDVSFDRSGFQYHGRVQALADAAREAGLQF. 0 12.0 9.0 1.2098166697263657E-4 2.4196333394527314E-4 0.0
/home/xiaowen/c_project/proteomics_cpp/testcases/data/st_no_digestion.msalign 951 1374 1838 54 18 13673.581110945313 13673.504202084961 6620 gi|16766719|ref|NP_462334.1| 50S ribosomal subunit protein L14 [Salmonella typhimurium LT2] 13673.504202084961 1 123 .MIQEQTMLNVADNSGARRVMCIKVLGGSHRRYAGVGDIIKITIKEAIPRGKVKKGDVLKAVVVRTKKGVRRPDGSVIRFDGNACVILNNNSEQPIGTRIFGPVTRELRNEKFMKIISLAPEVL. 0 6.0 6.0 1.2229068075765787E-4 2.4458136151531574E-4 0.0
/home/xiaowen/c_project/proteomics_cpp/testcases/data/st_no_digestion.msalign 1952 3077 4108 17 7 7267.635672414062 7267.58753033203 7050 gi|16766935|ref|NP_462550.1| major cold shock protein [Salmonella typhimurium LT2] 7398.628027158203 2 70 M.SGKMTGIVKWFNADKGFGFITPDDGSKDVFVHFSAIQNDGYKSLDEGQKVSFTIESGAKGPAAGNVTSL. 0 7.0 5.0 2.552305854018773E-4 2.552305854018773E-4 0.0
/home/xiaowen/c_project/proteomics_cpp/testcases/data/st_no_digestion.msalign 1481 2050 2739 39 13 9387.878932160158 9387.79499645752 3320 gi|16765059|ref|NP_460674.1| putative cytoplasmic protein [Salmonella typhimurium LT2] 9387.79499645752 1 83 .MHKETQPIDRETLLLEANKIIREHEDTMAGIVATGVTQRNGVLVFSGDYFLDEQGLPTPKSTAVFNMFKHLAHVLSEKYHLVD. 0 5.0 5.0 1.34265121100048E-4 2.68530242200096E-4 0.0
/home/xiaowen/c_project/proteomics_cpp/testcases/data/st_no_digestion.msalign 1609 2231 2980 25 12 9950.276879671877 9950.207769589844 4760 gi|16765785|ref|NP_461400.1| putative detox protein [Salmonella typhimurium LT2] 9950.207769589844 1 96 .MEALGMIETRGLVALIEASDAMVKAARVKLVGVKQIGGGLCTAMVRGDVAACKAATDAGAAAAQRIGELVSVHVIPRPHGDLEEVFPISFKGDSNI. 0 8.0 6.0 1.3984731502116014E-4 2.7969463004232027E-4 0.0
/home/xiaowen/c_project/proteomics_cpp/testcases/data/st_no_digestion.msalign 186 575 772 19 12 6348.575212015628 6348.575212015628 7204 gi|16767012|ref|NP_462627.1| 50S ribosomal subunit protein L33 [Salmonella typhimurium LT2] 6367.619703488769 1 55 .MAKGIREKIKLVSS(A)[-19.04]GTGHFYTTTKNKRTKPEKLELKKFDPVVRQHVIYKEAKIK. 1 6.0 5.0 0.005414623412666587 2.8761525111547874E-4 0.0
/home/xiaowen/c_project/proteomics_cpp/testcases/data/st_no_digestion.msalign 1130 1603 2143 15 11 8741.656184402347 8741.605169492186 3630 gi|16765218|ref|NP_460833.1| DNA polymerase III theta subunit [Salmonella typhimurium LT2] 8741.605169492188 1 76 .MKTNLAQLEQAEMDKVNVDLAAAGVAFKERYNMPVVAEAVEREQPEHLRAWFRERLIAHRLASVSLSRLPYEPKVK. 0 5.0 5.0 1.518264038576082E-4 3.036528077152164E-4 0.0
/home/xiaowen/c_project/proteomics_cpp/testcases/data/st_no_digestion.msalign 1666 2294 3064 134 30 21894.017219109373 21894.017219109373 6236 gi|16766528|ref|NP_462143.1| putative inner membrane protein [Salmonella typhimurium LT2] 11078.90770550293 2 101 M.SKDNTTEHLRAELKSLTDTLE(E)[10946.15]VLSSSGEKSKEELSKIRSKAERALKESRYRLGETGDVIAKQTRVAAARADDYVRENPWTGVGIGAAVGLVLGVLLTRR. 1 21.0 18.0 4.022456858420491E-6 3.0391785418387604E-4 0.0
/home/xiaowen/c_project/proteomics_cpp/testcases/data/st_no_digestion.msalign 1674 2304 3078 67 23 17715.565818609382 17715.418695645752 7984 gi|16767405|ref|NP_463020.1| 50S ribosomal subunit protein L10 [Salmonella typhimurium LT2] 17846.459192471924 2 165 M.ALNLQDKQAIVAEVSEVAKGALSAVVADSRGVTVDKMTELRKAGREAGVYMRVVRNTLLRRVVEGTQFECLKDTFVGPTLIAYSMEHPGAAARLFKEFAKANAKFEVKAAAFEGELIPASQIDRLATLPTYEEAIARLMATMKEASAGKLVRTLAAVRDAKEAA. 0 10.0 7.0 3.1371337409762595E-4 3.1371337409762595E-4 0.0
/home/xiaowen/c_project/proteomics_cpp/testcases/data/st_no_digestion.msalign 734 1150 1539 27 15 9518.330731789065 9518.289663510743 86 gi|16763433|ref|NP_459048.1| 30S ribosomal subunit protein S20 [Salmonella typhimurium LT2] 9649.330160336915 2 87 M.ANIKSAKKRAVQSEKARKHNASRRSMMRTFIKKVYAAIEAGDKAAALKAFNEMQPIVDRQAAKGLIHKNKAARHKANLTAQINKLA. 0 4.0 4.0 3.1635219900135884E-4 3.1635219900135884E-4 0.0
/home/xiaowen/c_project/proteomics_cpp/testcases/data/st_no_digestion.msalign 2 374 504 89 12 5377.09318828125 5377.076475339355 7424 gi|16767124|ref|NP_462739.1| 50S ribosomal subunit protein L34 [Salmonella typhimurium LT2] 5377.076475339355 1 46 .MKRTFQPSVLKRNRSHGFRARMATKNGRQVLARRRAKGRARLTVSK. 0 10.0 7.0 1.687158948772887E-4 3.374317897545774E-4 0.0
/home/xiaowen/c_project/proteomics_cpp/testcases/data/st_no_digestion.msalign 764 1180 1579 60 20 10278.701361546873 10278.658636289063 6632 gi|16766725|ref|NP_462340.1| 30S ribosomal subunit protein S19 [Salmonella typhimurium LT2] 10409.699133115235 2 92 M.PRSLKKGPFIDLHLLKKVEKAVESGDKKPLRTWSRRSTIFPNMIGLTIAVHNGRQHVPVFVSDEMVGHKLGEFAPTRTYRGHAADKKAKKK. 0 6.0 5.0 3.50594743054282E-4 3.50594743054282E-4 0.0
/home/xiaowen/c_project/proteomics_cpp/testcases/data/st_no_digestion.msalign 1691 2328 3110 27 20 18104.787998062508 18104.706731992188 4696 gi|16765753|ref|NP_461368.1| glucose-specific IIA component [Salmonella typhimurium LT2] 18235.74722881836 2 169 M.GLFDKLKSLVSDDKKDTGTIEIVAPLSGEIVNIEDVPDVVFAEKIVGDGIAIKPTGNKMVAPVDGTIGKIFETNHAFSIESDSGIELFVHFGIDTVELKGEGFKRIAEEGQRVKVGDPVIEFDLPLLEEKAKSTLTPVVISNMDEIKELIKLSGSVTVGETPVIRIKK. 0 4.0 4.0 3.623600476459982E-4 3.623600476459982E-4 0.0
/home/xiaowen/c_project/proteomics_cpp/testcases/data/st_no_digestion.msalign 331 731 980 29 13 7210.284957542971 7210.254739957276 2582 gi|16764686|ref|NP_460301.1| 50S ribosomal subunit protein L35 [Salmonella typhimurium LT2] 7341.295236783447 2 65 M.PKIKTVRGAAKRFKKTGKGGFKHKHANLRHILTKKATKRKRHLRPKAMVSKGDLGLVIACLPYA. 0 7.0 4.0 3.7440611034394593E-4 3.7440611034394593E-4 0.0
/home/xiaowen/c_project/proteomics_cpp/testcases/data/st_no_digestion.msalign 1608 2230 2979 17 11 9950.272803132815 9950.207769589844 4760 gi|16765785|ref|NP_461400.1| putative detox protein [Salmonella typhimurium LT2] 9950.207769589844 1 96 .MEALGMIETRGLVALIEASDAMVKAARVKLVGVKQIGGGLCTAMVRGDVAACKAATDAGAAAAQRIGELVSVHVIPRPHGDLEEVFPISFKGDSNI. 0 7.0 5.0 2.091721166594395E-4 4.18344233318879E-4 0.0
/home/xiaowen/c_project/proteomics_cpp/testcases/data/st_no_digestion.msalign 1474 2031 2714 10 14 16294.793477437503 16294.684805112305 1592 gi|16764195|ref|NP_459810.1| outer membrane protease precursor [Salmonella typhimurium LT2] 18539.917421536866 24 171 A.ATSTVTGGYAQSDAQGVANKMSGFNLKYRYEQDDNPLGVIGSFTYTEKDRTNGAGDYNKGQYYGITAGPAYRLNDWASIYGVVGVGYGKFQTTDYPTYKHDTSDYGFSYGAGLQFNPMENVALDFSYEQSRIRSVDVGTWIAGVGYRF. 0 4.0 4.0 2.0017275758083484E-5 4.2036279091975316E-4 0.0
/home/xiaowen/c_project/proteomics_cpp/testcases/data/st_no_digestion.msalign 1658 2285 3052 121 14 12106.039173617188 12105.95568295044 938 gi|16763865|ref|NP_459480.1| putative cytoplasmic protein [Salmonella typhimurium LT2] 12063.945116239014 1 109 .(M)[42.01]FGKGGLGNLMKQAQQMQEKMQKMQEEIAQLEVTGESGAGLVKVTINGAHNCRRVEIDPSLLEDDKEMLEDLVAAAFNDAARRIEETQKEKMASVSSGMQLPPGFKMPF. 0 14.0 12.0 2.1551581412891253E-4 4.3103162825782506E-4 0.0
/home/xiaowen/c_project/proteomics_cpp/testcases/data/st_no_digestion.msalign 384 790 1059 31 6 3042.7958519101567 3042.7908519101566 6592 gi|16766705|ref|NP_462320.1| 30S ribosomal subunit protein S4 [Salmonella typhimurium LT2] 23527.645174222413 2 28 M.ARYLGPKLKLSRREGTDLFLKSGVR(AI)[-.99].D 1 12.0 11.0 1.821849387939018E-5 4.4573509432714706E-4 0.0
/home/xiaowen/c_project/proteomics_cpp/testcases/data/st_no_digestion.msalign 74 447 602 21 10 6408.35758828125 6408.35758828125 2302 gi|16764546|ref|NP_460161.1| 50S ribosomal subunit protein L32 [Salmonella typhimurium LT2] 6442.431486325683 2 57 M.AVQQNKPTRSKRGMRRSHDALTAVT(SL)[96.97]SVDKTSGEKHLRHHITADGYYRGRKVIAK. 1 9.0 6.0 0.006473431363601976 4.647418417936415E-4 0.0
/home/xiaowen/c_project/proteomics_cpp/testcases/data/st_no_digestion.msalign 324 724 971 49 11 8518.706156160159 8518.73615616016 6198 gi|16766509|ref|NP_462124.1| 30S ribosomal subunit protein S21 [Salmonella typhimurium LT2] 8551.747667508545 2 71 M.PVIKVRENEPFDVALRRFKRSCEKAGVLAEVRRREFYEKPTTERKRAKASAVKRHAKKLARENAR(RTR)[98.03]LY. 1 8.0 8.0 0.0026447754213698806 4.8469712721620054E-4 0.0
/home/xiaowen/c_project/proteomics_cpp/testcases/data/st_no_digestion.msalign 1011 1441 1927 48 9 8113.319621078125 8113.281858640137 1836 gi|16764314|ref|NP_459929.1| protein chain initiation factor IF-1 [Salmonella typhimurium LT2] 8244.32235546631 2 72 M.AKEDNIEMQGTVLETLPNTMFRVELENGHVVTAHISGKMRKNYIRILTGDKVTVELTPYDLSKGRIVFRSR. 0 8.0 7.0 2.539169757800878E-4 5.078339515601756E-4 0.0
/home/xiaowen/c_project/proteomics_cpp/testcases/data/st_no_digestion.msalign 719 1134 1518 52 11 6509.643340507812 6509.658340507812 6604 gi|16766711|ref|NP_462326.1| 50S ribosomal subunit protein L30 [Salmonella typhimurium LT2] 6509.614042478027 2 59 M.AKTIKITQTRSAIGRLPKHKATLLGLGLRRIGHTVEREDTPAVRGMV(N)[131.08]AVSFMVKVEE. 1 10.0 8.0 0.005831002893957573 5.221339231503583E-4 0.0
/home/xiaowen/c_project/proteomics_cpp/testcases/data/st_no_digestion.msalign 1842 2629 3511 20 16 12160.54133325 12160.430410581055 7986 gi|16767406|ref|NP_463021.1| 50S ribosomal subunit protein L7/L12 [Salmonella typhimurium LT2] 12291.470907407227 2 121 M.SITKDQIIEAVSAMSVMDVVELISAMEEKFGVSAAAAVAVAAGPAEAAEEKTEFDVILKAAGANKVAVIKAVRGATGLGLKEAKDLVESAPAALKEGVSKDDAEALKKSLEEAGAEVEVK. 0 9.0 4.0 5.23694244641224E-4 5.23694244641224E-4 0.0
/home/xiaowen/c_project/proteomics_cpp/testcases/data/st_no_digestion.msalign 0 372 502 89 10 5377.086988328124 5377.076475339356 7424 gi|16767124|ref|NP_462739.1| 50S ribosomal subunit protein L34 [Salmonella typhimurium LT2] 5377.076475339355 1 46 .MKRTFQPSVLKRNRSHGFRARMATKNGRQVLARRRAKGRARLTVSK. 0 10.0 7.0 2.8712082497900127E-4 5.742416499580025E-4 0.0
/home/xiaowen/c_project/proteomics_cpp/testcases/data/st_no_digestion.msalign 1185 1665 2226 27 9 7272.036403617189 7272.036403617189 6624 gi|16766721|ref|NP_462336.1| 50S ribosomal subunit protein L29 [Salmonella typhimurium LT2] 7255.987646298828 1 63 .MKAKELREKSVEELNTELL(NLLREQFNLRMQA)[16.05]ASGQLQQSHLLKQVRRDVARVKTLLTEKAGA. 1 9.0 9.0 0.00147264989685937 5.934355201828845E-4 0.0
/home/xiaowen/c_project/proteomics_cpp/testcases/data/st_no_digestion.msalign 162 549 738 89 10 6266.608944054689 6266.608944054689 7204 gi|16767012|ref|NP_462627.1| 50S ribosomal subunit protein L33 [Salmonella typhimurium LT2] 6367.619703488769 2 55 M.(A)[30.03]KGIREKIKLVSSAGTGHFYTTTKNKRTKPEKLELKKFDPVVRQHVIYKEAKIK. 1 9.0 9.0 0.009169316560082965 6.006284691365945E-4 0.0
/home/xiaowen/c_project/proteomics_cpp/testcases/data/st_no_digestion.msalign 2001 3160 4219 65 22 13357.685627867186 13357.631246762696 2584 gi|16764687|ref|NP_460302.1| 50S ribosomal subunit protein L20 [Salmonella typhimurium LT2] 13488.671743588868 2 118 M.ARVKRGVIARARHKKILKQAKGYYGARSRVYRVAFQAVIKAGQYAYRDRRQRKRQFRQLWIARINAAARQNGISYSKFINGLKKASVEIDRKILADIAVFDKVAFTALVEKAKAALA. 0 7.0 6.0 6.18602260755753E-4 6.18602260755753E-4 0.0
/home/xiaowen/c_project/proteomics_cpp/testcases/data/st_no_digestion.msalign 1454 2010 2686 38 20 15478.140755312497 15477.992399411622 5400 gi|16766110|ref|NP_461725.1| DNA-binding protein [Salmonella typhimurium LT2] 15477.992399411622 1 133 .MNLMLQNLNNIRTLRAMAREFSIDVLEEMLEKFRVVTKERREEEELQQRQLAEKQEKINAFLELMKADGINPEELFAMDSAMPRSAKKRQPRPAKYRFTDFNGEEKTWTGQGRTPKPIAQALAAGKSLDDFLI. 0 8.0 7.0 2.3114388516833683E-4 6.934316555050105E-4 0.0
/home/xiaowen/c_project/proteomics_cpp/testcases/data/st_no_digestion.msalign 1222 1710 2286 38 14 11206.319783125 11206.238477902833 6636 gi|16766727|ref|NP_462342.1| 50S ribosomal subunit protein L23 [Salmonella typhimurium LT2] 11206.238477902833 1 100 .MIREERLLKVLRAPHVSEKASTAMEKTNTIVLKVAKDATKAEIKAAVQKLFEVEVEVVNTLVVKGKVKRHGQRIGRRSDWKKAYVTLKEGQNLDFVGGAE. 0 8.0 5.0 3.5751569450349343E-4 7.150313890069869E-4 0.0
/home/xiaowen/c_project/proteomics_cpp/testcases/data/st_no_digestion.msalign 558 965 1292 19 7 5311.911622738281 5311.890394406739 870 gi|16763832|ref|NP_459447.1| DNA-binding protein HU-beta [Salmonella typhimurium LT2] 9234.010030942383 40 90 G.DDVALVGFGTFAVKERAARTGRNPQTGKEITIAAAKVPSFRAGKALKDAVN. 0 5.0 5.0 3.025902275191743E-5 7.262165460460183E-4 0.0
/home/xiaowen/c_project/proteomics_cpp/testcases/data/st_no_digestion.msalign 811 1228 1643 37 16 9518.372650125 9518.289663510743 86 gi|16763433|ref|NP_459048.1| 30S ribosomal subunit protein S20 [Salmonella typhimurium LT2] 9649.330160336915 2 87 M.ANIKSAKKRAVQSEKARKHNASRRSMMRTFIKKVYAAIEAGDKAAALKAFNEMQPIVDRQAAKGLIHKNKAARHKANLTAQINKLA. 0 4.0 4.0 7.285179630878052E-4 7.285179630878052E-4 0.0
/home/xiaowen/c_project/proteomics_cpp/testcases/data/st_no_digestion.msalign 1451 2005 2679 40 19 15478.092855531248 15477.992399411623 5400 gi|16766110|ref|NP_461725.1| DNA-binding protein [Salmonella typhimurium LT2] 15477.992399411622 1 133 .MNLMLQNLNNIRTLRAMAREFSIDVLEEMLEKFRVVTKERREEEELQQRQLAEKQEKINAFLELMKADGINPEELFAMDSAMPRSAKKRQPRPAKYRFTDFNGEEKTWTGQGRTPKPIAQALAAGKSLDDFLI. 0 8.0 7.0 2.4639314667308234E-4 7.39179440019247E-4 0.0
/home/xiaowen/c_project/proteomics_cpp/testcases/data/st_no_digestion.msalign 1593 2207 2948 70 17 11546.292516031252 11546.193456845704 6172 gi|39546361|ref|NP_462111.2| putative cytoplasmic protein [Salmonella typhimurium LT2] 11546.193456845704 1 99 .MIDPKKIEQIARQVHESMPKGIREFGEDIEKKIRQTLQSQLTRLDLVSREEFDVQTQVLLRTREKLALLEQRLSELEARDKPEEVKPAPAIPPVDPQQE. 0 8.0 7.0 2.5205730636800814E-4 7.561719191040244E-4 0.0
/home/xiaowen/c_project/proteomics_cpp/testcases/data/st_no_digestion.msalign 78 452 608 26 12 6408.355487453127 6408.355487453127 2302 gi|16764546|ref|NP_460161.1| 50S ribosomal subunit protein L32 [Salmonella typhimurium LT2] 6442.431486325683 2 57 M.AVQQNKPTRSKRGMRRSHDALTA(VT)[96.96]SLSVDKTSGEKHLRHHITADGYYRGRKVIAK. 1 7.0 6.0 0.010960791779262513 7.868992923370817E-4 0.0
/home/xiaowen/c_project/proteomics_cpp/testcases/data/st_no_digestion.msalign 1461 2017 2695 38 21 15478.148310855468 15477.992399411622 5400 gi|16766110|ref|NP_461725.1| DNA-binding protein [Salmonella typhimurium LT2] 15477.992399411622 1 133 .MNLMLQNLNNIRTLRAMAREFSIDVLEEMLEKFRVVTKERREEEELQQRQLAEKQEKINAFLELMKADGINPEELFAMDSAMPRSAKKRQPRPAKYRFTDFNGEEKTWTGQGRTPKPIAQALAAGKSLDDFLI. 0 8.0 7.0 2.6277933872853387E-4 7.883380161856017E-4 0.0
/home/xiaowen/c_project/proteomics_cpp/testcases/data/st_no_digestion.msalign 1052 1489 1991 22 15 11759.497684859374 11759.412664609374 6642 gi|16766730|ref|NP_462345.1| 30S ribosomal subunit protein S10 [Salmonella typhimurium LT2] 11759.412664609375 1 103 .MQNQRIRIRLKAFDHRLIDQSTAEIVETAKRTGAQVRGPIPLPTRKERFTVLISPHVNKDARDQYEIRTHKRLVDIVEPTEKTVDALMRLDLAAGVDVQISLG. 0 4.0 4.0 2.001479911450914E-4 8.005919645803656E-4 0.0
/home/xiaowen/c_project/proteomics_cpp/testcases/data/st_no_digestion.msalign 1219 1707 2282 33 16 11206.336481125 11206.238477902833 6636 gi|16766727|ref|NP_462342.1| 50S ribosomal subunit protein L23 [Salmonella typhimurium LT2] 11206.238477902833 1 100 .MIREERLLKVLRAPHVSEKASTAMEKTNTIVLKVAKDATKAEIKAAVQKLFEVEVEVVNTLVVKGKVKRHGQRIGRRSDWKKAYVTLKEGQNLDFVGGAE. 0 8.0 5.0 4.2110174002478744E-4 8.422034800495749E-4 0.0
/home/xiaowen/c_project/proteomics_cpp/testcases/data/st_no_digestion.msalign 1171 1650 2206 26 13 12512.560944019531 12512.555944019532 5146 gi|16765980|ref|NP_461595.1| ribosome stabilization factor [Salmonella typhimurium LT2] 12644.54841442627 2 112 M.TMNITSKQMEITPAIRQHVADRLAKLEKWQTHLINPHI(ILSKEPQGF)[-.95]IADATINTPNGHLVASAKHEDMYTAINELINKLERQLNKVQHKGEARRATASVKDASFVEAEEE. 1 8.0 8.0 0.003760411122335786 9.489597381399191E-4 0.0
/home/xiaowen/c_project/proteomics_cpp/testcases/data/st_no_digestion.msalign 1464 2020 2699 13 19 15163.532987007815 15163.423299985354 8448 gi|16767637|ref|NP_463252.1| 30S ribosomal subunit protein S6 [Salmonella typhimurium LT2] 15163.423299985352 1 131 .MRHYEIVFMVHPDQSEQVPGMIERYSAAITGAEGKIHRLEDWGRRQLAYPINKLHKAHYVLMNVEAPQEVIDELETTFRFNDAVIRSMVMRTKHAVTEASPMVKAKDERRERRDDFANETADDAEAGDSEE. 0 5.0 4.0 4.895637466835285E-4 9.79127493367057E-4 0.0
/home/xiaowen/c_project/proteomics_cpp/testcases/data/st_no_digestion.msalign 717 1132 1515 38 7 6509.6448566171875 6509.614042478027 6604 gi|16766711|ref|NP_462326.1| 50S ribosomal subunit protein L30 [Salmonella typhimurium LT2] 6509.614042478027 1 59 .MAKTIKITQTRSAIGRLPKHKATLLGLGLRRIGHTVEREDTPAVRGMVNAVSFMVKVEE. 0 6.0 6.0 5.135760752779973E-4 0.0010271521505559947 0.0
/home/xiaowen/c_project/proteomics_cpp/testcases/data/st_no_digestion.msalign 722 1137 1522 76 7 6509.6363116953125 6509.614042478027 6604 gi|16766711|ref|NP_462326.1| 50S ribosomal subunit protein L30 [Salmonella typhimurium LT2] 6509.614042478027 1 59 .MAKTIKITQTRSAIGRLPKHKATLLGLGLRRIGHTVEREDTPAVRGMVNAVSFMVKVEE. 0 9.0 8.0 5.356597296570267E-4 0.0010713194593140534 0.0
/home/xiaowen/c_project/proteomics_cpp/testcases/data/st_no_digestion.msalign 516 923 1236 44 8 5288.95044828125 5288.937299924317 8022 gi|16767424|ref|NP_463039.1| DNA-binding protein HU-alpha [Salmonella typhimurium LT2] 9515.17277355713 41 90 D.AVQLVGFGTFKVNHRAERTGRNPQTGKEIKIAAANVPAFVSGKALKDAVK. 0 6.0 5.0 9.781087342444483E-5 0.0010759196076688931 0.0
/home/xiaowen/c_project/proteomics_cpp/testcases/data/st_no_digestion.msalign 1701 2346 3134 15 12 11232.873885906252 11232.765684323731 6542 gi|16766680|ref|NP_462295.1| factor-for-inversion stimulation protein [Salmonella typhimurium LT2] 11232.765684323731 1 98 .MFEQRVNSDVLTVSTVNSQDQVTQKPLRDSVKQALKNYFAQLNGQDVNDLYELVLAEVEQPLLDMVMQYTRGNQTRAALMMGINRGTLRKKLKKYGMN. 0 6.0 4.0 5.394450105386233E-4 0.0010788900210772466 0.0
/home/xiaowen/c_project/proteomics_cpp/testcases/data/st_no_digestion.msalign 1614 2237 2988 18 11 8823.825841136722 8823.72296734375 516 gi|16763651|ref|NP_459266.1| putative cytoplasmic protein [Salmonella typhimurium LT2] 18960.890054898682 90 164 H.KWDDISEAIRRAIIRFEPRLNAATLRVTPLLDKTRQGSYNTLQFEIRGQILTQPYPTEFLVRSALDMELSRITFF. 0 5.0 5.0 5.703641025715638E-5 0.0010836917948859712 0.0
/home/xiaowen/c_project/proteomics_cpp/testcases/data/st_no_digestion.msalign 1442 1995 2666 14 15 15163.566302433594 15163.423299985352 8448 gi|16767637|ref|NP_463252.1| 30S ribosomal subunit protein S6 [Salmonella typhimurium LT2] 15163.423299985352 1 131 .MRHYEIVFMVHPDQSEQVPGMIERYSAAITGAEGKIHRLEDWGRRQLAYPINKLHKAHYVLMNVEAPQEVIDELETTFRFNDAVIRSMVMRTKHAVTEASPMVKAKDERRERRDDFANETADDAEAGDSEE. 0 6.0 4.0 5.52990634506679E-4 0.001105981269013358 0.0
/home/xiaowen/c_project/proteomics_cpp/testcases/data/st_no_digestion.msalign 1480 2049 2738 47 13 9387.878932160158 9387.79499645752 3320 gi|16765059|ref|NP_460674.1| putative cytoplasmic protein [Salmonella typhimurium LT2] 9387.79499645752 1 83 .MHKETQPIDRETLLLEANKIIREHEDTMAGIVATGVTQRNGVLVFSGDYFLDEQGLPTPKSTAVFNMFKHLAHVLSEKYHLVD. 0 7.0 5.0 5.951410002224217E-4 0.0011902820004448434 0.0
/home/xiaowen/c_project/proteomics_cpp/testcases/data/st_no_digestion.msalign 2014 3176 4240 46 23 13357.656379210937 13357.631246762696 2584 gi|16764687|ref|NP_460302.1| 50S ribosomal subunit protein L20 [Salmonella typhimurium LT2] 13488.671743588868 2 118 M.ARVKRGVIARARHKKILKQAKGYYGARSRVYRVAFQAVIKAGQYAYRDRRQRKRQFRQLWIARINAAARQNGISYSKFINGLKKASVEIDRKILADIAVFDKVAFTALVEKAKAALA. 0 4.0 4.0 0.0011967184129554696 0.0011967184129554696 0.0
/home/xiaowen/c_project/proteomics_cpp/testcases/data/st_no_digestion.msalign 493 900 1206 53 8 5389.987038374999 5389.955358701172 6630 gi|16766724|ref|NP_462339.1| 50S ribosomal subunit protein L22 [Salmonella typhimurium LT2] 12218.769315915528 63 110 D.GADIDDLKVTKIFVDEGPSMKRIMPRAKGRADRILKRTSHITVVVSDR. 0 7.0 7.0 6.135602072438441E-5 0.001227120414487688 0.0
/home/xiaowen/c_project/proteomics_cpp/testcases/data/st_no_digestion.msalign 984 1414 1891 72 22 14442.761086867185 14442.68937130493 6588 gi|16766703|ref|NP_462318.1| 50S ribosomal subunit protein L17 [Salmonella typhimurium LT2] 14442.689371304932 1 127 .MRHRKSGRQLNRNSSHRQAMFRNMAGSLVRHEIIKTTLPKAKELRRVVEPLITLAKTDSVANRRLAFARTRDNEIVAKLFNELGPRFASRAGGYTRILKCGFRAGDNAPMAYIELVDRSEKTEAAAE. 0 8.0 7.0 6.173110383434848E-4 0.0012346220766869696 0.0
/home/xiaowen/c_project/proteomics_cpp/testcases/data/st_no_digestion.msalign 1231 1719 2298 136 16 11206.318903 11206.238477902833 6636 gi|16766727|ref|NP_462342.1| 50S ribosomal subunit protein L23 [Salmonella typhimurium LT2] 11206.238477902833 1 100 .MIREERLLKVLRAPHVSEKASTAMEKTNTIVLKVAKDATKAEIKAAVQKLFEVEVEVVNTLVVKGKVKRHGQRIGRRSDWKKAYVTLKEGQNLDFVGGAE. 0 14.0 9.0 6.524597719669865E-4 0.001304919543933973 0.0
/home/xiaowen/c_project/proteomics_cpp/testcases/data/st_no_digestion.msalign 810 1227 1642 70 17 9518.363237894535 9518.289663510743 86 gi|16763433|ref|NP_459048.1| 30S ribosomal subunit protein S20 [Salmonella typhimurium LT2] 9649.330160336915 2 87 M.ANIKSAKKRAVQSEKARKHNASRRSMMRTFIKKVYAAIEAGDKAAALKAFNEMQPIVDRQAAKGLIHKNKAARHKANLTAQINKLA. 0 6.0 5.0 0.001470523037306802 0.001470523037306802 0.0
/home/xiaowen/c_project/proteomics_cpp/testcases/data/st_no_digestion.msalign 1429 1975 2639 34 18 15590.127576351564 15590.001573758545 3388 gi|16765095|ref|NP_460710.1| DNA-binding protein HLP-II [Salmonella typhimurium LT2] 15590.001573758545 1 137 .MSEALKILNNIRTLRAQARECTLETLEEMLEKLEVVVNERREEESAAAAEVEERTRKLQQYREMLIADGIDPNELLNSMAAAKSGTKAKRAARPAKYSYVDENGETKTWTGQGRTPAVIKKAMEEQGKQLEDFLIKE. 0 9.0 6.0 7.423145647716214E-4 0.0014846291295432428 0.0
/home/xiaowen/c_project/proteomics_cpp/testcases/data/st_no_digestion.msalign 53 426 574 80 10 5377.081495164061 5377.076475339356 7424 gi|16767124|ref|NP_462739.1| 50S ribosomal subunit protein L34 [Salmonella typhimurium LT2] 5377.076475339355 1 46 .MKRTFQPSVLKRNRSHGFRARMATKNGRQVLARRRAKGRARLTVSK. 0 6.0 6.0 7.583922075772713E-4 0.0015167844151545427 7.898894154818325E-4
/home/xiaowen/c_project/proteomics_cpp/testcases/data/st_no_digestion.msalign 1110 1570 2099 23 13 10089.119131011717 10089.058084683838 1668 gi|16764234|ref|NP_459849.1| glutaredoxin 1 [Salmonella typhimurium LT2] 10089.058084683838 1 87 .MFTVIFGRPGCPYCVRAKELAEKLSKERDDFNYRYIDIHAEGITKADLEKTVGKPVETVPQIFVDQKHIGGCTDFEAWAKENLNLFA. 0 4.0 4.0 7.632079706360459E-4 0.0015264159412720919 7.892659826361484E-4
/home/xiaowen/c_project/proteomics_cpp/testcases/data/st_no_digestion.msalign 777 1194 1598 115 9 12994.463910828124 12994.463910828124 7524 gi|16767174|ref|NP_462789.1| putative transcriptional regulator [Salmonella typhimurium LT2] 13126.450601773682 1 112 .MAESFTTTNRYFDNKHYPRGFSRHGDF(TIKEAQLLER)[-131.99]HGHAFNDLDLGKREPVTEEEKLFVAVCRGEREPVTDAERVWSKYMTRIKRPKRFHTLSGGKPQVEGAEDYTEADD. 1 15.0 14.0 0.0021842577336493663 0.0015383321500985715 7.886435331230284E-4
/home/xiaowen/c_project/proteomics_cpp/testcases/data/st_no_digestion.msalign 1448 2001 2674 17 17 15292.586892683597 15292.496892683597 8448 gi|16767637|ref|NP_463252.1| 30S ribosomal subunit protein S6 [Salmonella typhimurium LT2] 15163.423299985352 1 131 .MRHYEIVFMVHPDQSEQVPGMIERYSAAITGAEGKIHRLEDWGRRQLAYPINKLHKAHYVLMNVEAPQEVIDELETTFRFNDAVIRSMVMRTKHAVTEASPMVKAKD(ERRERRDDFANETADDAEAGDSEE)[129.07]. 1 10.0 7.0 0.0026115688076557256 0.0015599189223120483 7.880220646178094E-4
/home/xiaowen/c_project/proteomics_cpp/testcases/data/st_no_digestion.msalign 807 1224 1638 59 9 6392.61777896875 6392.61777896875 6604 gi|16766711|ref|NP_462326.1| 50S ribosomal subunit protein L30 [Salmonella typhimurium LT2] 6509.614042478027 2 59 M.(AK)[14.04]TIKITQTRSAIGRLPKHKATLLGLGLRRIGHTVEREDTPAVRGMVNAVSFMVKVEE. 1 9.0 9.0 0.01039693910203166 0.0015760174109648356 7.874015748031496E-4
/home/xiaowen/c_project/proteomics_cpp/testcases/data/st_no_digestion.msalign 780 1197 1602 71 8 8720.2776928125 8720.2776928125 7294 gi|16767058|ref|NP_462673.1| putative inner membrane protein [Salmonella typhimurium LT2] 11089.657293515625 22 97 A.DSPFSSLQSAHEKNTIL(KD)[-116.02]LRKMCTPKGALTDEAWEKKIMASEGNQQHIREAMIAIERNNQHNYWQALGKVECPEM. 1 17.0 14.0 3.300493425835193E-5 0.0016567499041802232 7.867820613690008E-4
/home/xiaowen/c_project/proteomics_cpp/testcases/data/st_no_digestion.msalign 1014 1444 1931 56 13 8113.326161609377 8113.281858640137 1836 gi|16764314|ref|NP_459929.1| protein chain initiation factor IF-1 [Salmonella typhimurium LT2] 8244.32235546631 2 72 M.AKEDNIEMQGTVLETLPNTMFRVELENGHVVTAHISGKMRKNYIRILTGDKVTVELTPYDLSKGRIVFRSR. 0 9.0 7.0 8.32403233994702E-4 0.001664806467989404 7.861635220125787E-4
/home/xiaowen/c_project/proteomics_cpp/testcases/data/st_no_digestion.msalign 1086 1538 2056 35 9 7446.834067933595 7446.7773954443355 1216 gi|16764006|ref|NP_459621.1| negative regulator [Salmonella typhimurium LT2] 7446.7773954443355 1 69 .MSKIKGNVKWFNESKGFGFITPEDGSKDVFVHFSAIQTNGFKTLAEGQRVEFEITNGAKGPSAANVTAL. 0 7.0 5.0 9.295833396720988E-4 0.0018591666793441976 7.855459544383347E-4
/home/xiaowen/c_project/proteomics_cpp/testcases/data/st_no_digestion.msalign 975 1402 1875 31 10 6851.681786507814 6851.6541196875 5446 gi|16766132|ref|NP_461747.1| carbon storage regulator [Salmonella typhimurium LT2] 6851.6541196875 1 61 .MLILTRRVGETLMIGDEVTVTVLGVKGNQVRIGVNAPKEVSVHREEIYQRIQAEKSQQSSY. 0 4.0 4.0 0.0010054314070067664 0.0020108628140135328 7.849293563579278E-4
/home/xiaowen/c_project/proteomics_cpp/testcases/data/st_no_digestion.msalign 1588 2202 2942 34 15 11546.336425941407 11546.193456845704 6172 gi|39546361|ref|NP_462111.2| putative cytoplasmic protein [Salmonella typhimurium LT2] 11546.193456845704 1 99 .MIDPKKIEQIARQVHESMPKGIREFGEDIEKKIRQTLQSQLTRLDLVSREEFDVQTQVLLRTREKLALLEQRLSELEARDKPEEVKPAPAIPPVDPQQE. 0 7.0 5.0 6.830072732663749E-4 0.0020490218197991247 7.84313725490196E-4
/home/xiaowen/c_project/proteomics_cpp/testcases/data/st_no_digestion.msalign 1118 1585 2119 76 11 9229.066048546876 9229.012678342286 5168 gi|16765991|ref|NP_461606.1| 30S ribosomal subunit protein S16 [Salmonella typhimurium LT2] 9229.012678342286 1 82 .MVTIRLARHGAKKRPFYQVVVTDSRNARNGRFIERVGFFNPIASEKEEGTRLDLDRIAHWVGQGATISDRVAALIKEVKKAA. 0 7.0 7.0 0.0010282995477659447 0.0020565990955318894 7.836990595611285E-4
/home/xiaowen/c_project/proteomics_cpp/testcases/data/st_no_digestion.msalign 495 902 1208 56 8 5389.987038374999 5389.955358701172 6630 gi|16766724|ref|NP_462339.1| 50S ribosomal subunit protein L22 [Salmonella typhimurium LT2] 12218.769315915528 63 110 D.GADIDDLKVTKIFVDEGPSMKRIMPRAKGRADRILKRTSHITVVVSDR. 0 8.0 7.0 1.0705589349598828E-4 0.0021411178699197657 7.830853563038371E-4
/home/xiaowen/c_project/proteomics_cpp/testcases/data/st_no_digestion.msalign 128 513 690 26 8 11047.855133937499 11047.855133937499 1452 gi|16764124|ref|NP_459739.1| hypothetical protein STM0759 [Salmonella typhimurium LT2] 13436.224081235352 25 128 A.AESNAQSSNGQANSAANAGQVAPDARQNVA(PNDVNNND)[-17.01]INTNGNTNSTMQHPDGSTMNHDGMTKDEEHKNTMCKDGRCPDINKKVETGNGVNNDVNTKTDGTTQ. 1 10.0 9.0 8.34681089059762E-5 0.0021506937811632916 7.82472613458529E-4
/home/xiaowen/c_project/proteomics_cpp/testcases/data/st_no_digestion.msalign 1615 2238 2990 10 11 12122.052212554689 12122.028196530764 2012 gi|16764400|ref|NP_460015.1| probable minor tail protein [Phage Gifsy-2] 12481.154554562989 4 109 N.ELHFVRQLAREFRRPDWRRMLDEMSSTELSEWADFFRENSFSDALLDAEFSTLKAQVFMLVTGKEIDAADFSLLTLPGAVQSMTEQDLLEVAVGIPGGVRFEPESR. 0 5.0 4.0 6.845629795065662E-5 0.002259057832371668 7.818608287724785E-4
/home/xiaowen/c_project/proteomics_cpp/testcases/data/st_no_digestion.msalign 130 515 692 18 8 4078.2316828750004 4078.2187406591793 2302 gi|16764546|ref|NP_460161.1| 50S ribosomal subunit protein L32 [Salmonella typhimurium LT2] 6442.431486325683 21 57 D.ALTAVTSLSVDKTSGEKHLRHHITADGYYRGRKVIAK. 0 4.0 4.0 1.4127390186108687E-4 0.00226038242977739 7.8125E-4
/home/xiaowen/c_project/proteomics_cpp/testcases/data/st_no_digestion.msalign 575 982 1315 26 5 3148.454066851563 3148.442693906247 2072 gi|16764429|ref|NP_460044.1| putative hydrogenase membrane component precurosr [Salmonella typhimurium LT2] 37605.86566753906 22 49 A.APKDNTWYAGAKLGWSQYHDTGFIHNDG.P 0 9.0 7.0 9.619409063300248E-7 0.0022694195621913308 7.8064012490242E-4
/home/xiaowen/c_project/proteomics_cpp/testcases/data/st_no_digestion.msalign 1768 2469 3298 28 21 18697.94860184766 18697.77667446655 3348 gi|16765073|ref|NP_460688.1| putative cytoplasmic protein [Salmonella typhimurium LT2] 18697.776674466553 1 167 .MNIKTVEDLFIHLLSDTYSAEKQLTKALPKLARATSNEKLSQAFQSHLEETQGQIERIDQIVESESGIKLKRMKCVAMEGLIEEANEVIESTEKNEVRDAALIAAAQKVEHYEIASYGTLATLAEQLGYSKALKLLKETLDEEKQTDLKLTDLAVSNVNKSAERKSK. 0 4.0 4.0 0.0014015393110043425 0.002803078622008685 7.8003120124805E-4
/home/xiaowen/c_project/proteomics_cpp/testcases/data/st_no_digestion.msalign 1339 1853 2476 13 19 14919.142309937504 14919.092516141354 3274 gi|16765036|ref|NP_460651.1| peptide transport protein [Salmonella typhimurium LT2] 36144.478410916745 2 133 M.IIFTLRRLLLLLVTLFFLTFIGFSLSYFTPHAPLQGASLWNAWVFWFNGLLHWDFGVSSINGQLISEQLKEVFPATMELCILAFGFALMVGIPVGMLAGVTRSKWPDRFISALALLGFSIPVFWLALLLTLF.F 0 4.0 4.0 3.794798286583092E-5 0.002808150732071488 7.79423226812159E-4
/home/xiaowen/c_project/proteomics_cpp/testcases/data/st_no_digestion.msalign 1453 2007 2682 18 18 15478.107699890626 15477.99239941162 5400 gi|16766110|ref|NP_461725.1| DNA-binding protein [Salmonella typhimurium LT2] 15477.992399411622 1 133 .MNLMLQNLNNIRTLRAMAREFSIDVLEEMLEKFRVVTKERREEEELQQRQLAEKQEKINAFLELMKADGINPEELFAMDSAMPRSAKKRQPRPAKYRFTDFNGEEKTWTGQGRTPKPIAQALAAGKSLDDFLI. 0 7.0 5.0 9.368521666905231E-4 0.0028105565000715693 7.78816199376947E-4
/home/xiaowen/c_project/proteomics_cpp/testcases/data/st_no_digestion.msalign 546 953 1276 53 12 6393.597904093749 6393.597904093749 6604 gi|16766711|ref|NP_462326.1| 50S ribosomal subunit protein L30 [Salmonella typhimurium LT2] 6509.614042478027 2 59 M.AKTIKITQTRSAIGRLPKHKATLLGLGLRRIGHTVEREDTPAVRGMVNAVS(FM)[15.02]VKVEE. 1 11.0 8.0 0.017354436313854027 0.0029100426745791814 7.782101167315176E-4
/home/xiaowen/c_project/proteomics_cpp/testcases/data/st_no_digestion.msalign 1134 1607 2148 16 11 8741.645442214847 8741.605169492186 3630 gi|16765218|ref|NP_460833.1| DNA polymerase III theta subunit [Salmonella typhimurium LT2] 8741.605169492188 1 76 .MKTNLAQLEQAEMDKVNVDLAAAGVAFKERYNMPVVAEAVEREQPEHLRAWFRERLIAHRLASVSLSRLPYEPKVK. 0 4.0 4.0 0.0017986213540226955 0.003597242708045391 7.776049766718507E-4
/home/xiaowen/c_project/proteomics_cpp/testcases/data/st_no_digestion.msalign 766 1182 1582 175 15 12995.466702582033 12995.41010494751 7524 gi|16767174|ref|NP_462789.1| putative transcriptional regulator [Salmonella typhimurium LT2] 13126.450601773682 2 112 M.AESFTTTNRYFDNKHYPRGFSRHGDFTIKEAQLLERHGHAFNDLDLGKREPVTEEEKLFVAVCRGEREPVTDAERVWSKYMTRIKRPKRFHTLSGGKPQVEGAEDYTEADD. 0 14.0 9.0 0.0036094737362537444 0.0036094737362537444 7.77000777000777E-4
/home/xiaowen/c_project/proteomics_cpp/testcases/data/st_no_digestion.msalign 1054 1493 1996 38 11 11759.492731242188 11759.412664609375 6642 gi|16766730|ref|NP_462345.1| 30S ribosomal subunit protein S10 [Salmonella typhimurium LT2] 11759.412664609375 1 103 .MQNQRIRIRLKAFDHRLIDQSTAEIVETAKRTGAQVRGPIPLPTRKERFTVLISPHVNKDARDQYEIRTHKRLVDIVEPTEKTVDALMRLDLAAGVDVQISLG. 0 5.0 5.0 9.135197448786991E-4 0.0036540789795147964 7.763975155279503E-4
/home/xiaowen/c_project/proteomics_cpp/testcases/data/st_no_digestion.msalign 1233 1721 2300 59 18 11206.316191820315 11206.238477902833 6636 gi|16766727|ref|NP_462342.1| 50S ribosomal subunit protein L23 [Salmonella typhimurium LT2] 11206.238477902833 1 100 .MIREERLLKVLRAPHVSEKASTAMEKTNTIVLKVAKDATKAEIKAAVQKLFEVEVEVVNTLVVKGKVKRHGQRIGRRSDWKKAYVTLKEGQNLDFVGGAE. 0 5.0 4.0 0.0019390272545973298 0.0038780545091946597 7.757951900698216E-4
/home/xiaowen/c_project/proteomics_cpp/testcases/data/st_no_digestion.msalign 54 427 575 79 10 5377.081495164061 5377.076475339356 7424 gi|16767124|ref|NP_462739.1| 50S ribosomal subunit protein L34 [Salmonella typhimurium LT2] 5377.076475339355 1 46 .MKRTFQPSVLKRNRSHGFRARMATKNGRQVLARRRAKGRARLTVSK. 0 5.0 5.0 0.0020198199883456145 0.004039639976691229 7.751937984496124E-4
/home/xiaowen/c_project/proteomics_cpp/testcases/data/st_no_digestion.msalign 988 1418 1896 75 24 14442.799879593753 14442.68937130493 6588 gi|16766703|ref|NP_462318.1| 50S ribosomal subunit protein L17 [Salmonella typhimurium LT2] 14442.689371304932 1 127 .MRHRKSGRQLNRNSSHRQAMFRNMAGSLVRHEIIKTTLPKAKELRRVVEPLITLAKTDSVANRRLAFARTRDNEIVAKLFNELGPRFASRAGGYTRILKCGFRAGDNAPMAYIELVDRSEKTEAAAE. 0 7.0 6.0 0.0022855954510073765 0.004571190902014753 7.74593338497289E-4
/home/xiaowen/c_project/proteomics_cpp/testcases/data/st_no_digestion.msalign 204 601 807 21 4 2932.531299140625 2932.522665219727 5104 gi|16765959|ref|NP_461574.1| anti sigma-E factor [Salmonella typhimurium LT2] 24264.167574124756 149 175 V.SLGVPSEAAPVGSQQQQVQEQRRRINA.M 0 10.0 8.0 2.1829341211124757E-6 0.004814703119146697 7.739938080495357E-4
/home/xiaowen/c_project/proteomics_cpp/testcases/data/st_no_digestion.msalign 1611 2234 2984 20 12 12122.01039065625 12122.028196530762 2012 gi|16764400|ref|NP_460015.1| probable minor tail protein [Phage Gifsy-2] 12481.154554562989 4 109 N.ELHFVRQLAREFRRPDWRRMLDEMSSTELSEWADFFRENSFSDALLDAEFSTLKAQVFMLVTGKEIDAADFSLLTLPGAVQSMTEQDLLEVAVGIPGGVRFEPESR. 0 6.0 5.0 1.4460243784784101E-4 0.004916482886826595 7.733952049497294E-4
/home/xiaowen/c_project/proteomics_cpp/testcases/data/st_no_digestion.msalign 885 1306 1747 113 18 10060.491992734374 10060.428564267579 6342 gi|16766581|ref|NP_462196.1| 30S ribosomal subunit protein S15 [Salmonella typhimurium LT2] 10191.46906109375 2 89 M.SLSTEATAKIVSEFGRDANDTGSTDVQVALLTAQINHLQGHFAEHKKDHHSRRGLLRMVSQRRKLLDYLKRKDVARYTALIERLGLRR. 0 9.0 7.0 0.004992111826593719 0.004992111826593719 7.727975270479134E-4
/home/xiaowen/c_project/proteomics_cpp/testcases/data/st_no_digestion.msalign 1298 1793 2396 41 17 11642.103222011721 11642.040060239258 8534 gi|16767685|ref|NP_463300.1| cytochrome b562 [Salmonella typhimurium LT2] 13903.336981015625 23 128 A.ADLEDNMDILNDNLKVVEKTDSAPELKAALTKMRAAALDAQKATPPKLEDKAPDSPEMKDFRHGFDILVGQIDGALKLANEGNVKEAKAAAEALKTTRNTYHKKYR. 0 8.0 6.0 1.2187549259817362E-4 0.0049968951965251186 7.722007722007722E-4
/home/xiaowen/c_project/proteomics_cpp/testcases/data/st_no_digestion.msalign 1329 1830 2446 29 9 12434.101377523437 12434.01762218994 2174 gi|16764480|ref|NP_460095.1| putative periplasmic protein [Salmonella typhimurium LT2] 14522.176363187256 20 131 A.DECASASTQLEMNRCAAAQYQAADKKLNETYQSALKRAQPPQRELLQKAQVAWIALRDADCALIRSGTEGGSVQPMIASQCLTDKTNEREAFLASLLQCEEGDLSCPLPPAG. 0 6.0 6.0 1.9899819201616367E-4 0.005372951184436419 7.716049382716049E-4
/home/xiaowen/c_project/proteomics_cpp/testcases/data/st_no_digestion.msalign 312 712 955 72 14 8518.732973179689 8518.732973179689 6198 gi|16766509|ref|NP_462124.1| 30S ribosomal subunit protein S21 [Salmonella typhimurium LT2] 8551.747667508545 2 71 M.PVIKVRENEPFDVALRRFKRSCEKAGVLAEVRRREFYEKPTTERKRAKA(SAVKRHAKKLARENARRTR)[98.03]LY. 1 7.0 7.0 0.031263066076682874 0.005729453696862389 7.710100231303007E-4
/home/xiaowen/c_project/proteomics_cpp/testcases/data/st_no_digestion.msalign 1966 3110 4152 21 11 11759.508844523438 11759.412664609375 6642 gi|16766730|ref|NP_462345.1| 30S ribosomal subunit protein S10 [Salmonella typhimurium LT2] 11759.412664609375 1 103 .MQNQRIRIRLKAFDHRLIDQSTAEIVETAKRTGAQVRGPIPLPTRKERFTVLISPHVNKDARDQYEIRTHKRLVDIVEPTEKTVDALMRLDLAAGVDVQISLG. 0 4.0 4.0 0.0014524873077130657 0.005809949230852263 7.704160246533128E-4
/home/xiaowen/c_project/proteomics_cpp/testcases/data/st_no_digestion.msalign 1956 3083 4116 16 14 16293.776631734378 16293.776631734378 1592 gi|16764195|ref|NP_459810.1| outer membrane protease precursor [Salmonella typhimurium LT2] 18539.917421536866 1 171 .(MKKIACLSALAAVLAFSAGTAVAATSTVTGGYAQSDAQGVANKMSGFNLKYRYEQDDNPLGVIGSFTYTEKDRTNGAGDYNKGQYYGITAGPAY)[42.01](RLNDWASIYGVVGVGYGKFQTTDYPTYKHDTSDYGFSYGA)[-2288.15]GLQFNPMENVALDFSYEQSRIRSVDVGTWIAGVGYRF. 1 7.0 7.0 5.613660260496392E-4 0.006599659640019162 0.001539645881447267
/home/xiaowen/c_project/proteomics_cpp/testcases/data/st_no_digestion.msalign 1225 1713 2290 66 17 11206.32371196094 11206.238477902834 6636 gi|16766727|ref|NP_462342.1| 50S ribosomal subunit protein L23 [Salmonella typhimurium LT2] 11206.238477902833 1 100 .MIREERLLKVLRAPHVSEKASTAMEKTNTIVLKVAKDATKAEIKAAVQKLFEVEVEVVNTLVVKGKVKRHGQRIGRRSDWKKAYVTLKEGQNLDFVGGAE. 0 5.0 5.0 0.0034498662159418774 0.006899732431883755 0.0015384615384615385
/home/xiaowen/c_project/proteomics_cpp/testcases/data/st_no_digestion.msalign 220 617 828 56 9 4930.729425128908 4930.70897503418 6376 gi|16766598|ref|NP_462213.1| 50S ribosomal subunit protein L27 [Salmonella typhimurium LT2] 9175.939195828858 2 48 M.AHKKAGGSTRNGRDSEAKRLGVKRFGGEAVLAGSIIVRQRGTKFHAG.T 0 8.0 6.0 1.6514630032968348E-4 0.006936144613846706 0.0015372790161414297
/home/xiaowen/c_project/proteomics_cpp/testcases/data/st_no_digestion.msalign 770 1187 1588 140 14 12995.484903875 12995.41010494751 7524 gi|16767174|ref|NP_462789.1| putative transcriptional regulator [Salmonella typhimurium LT2] 13126.450601773682 2 112 M.AESFTTTNRYFDNKHYPRGFSRHGDFTIKEAQLLERHGHAFNDLDLGKREPVTEEEKLFVAVCRGEREPVTDAERVWSKYMTRIKRPKRFHTLSGGKPQVEGAEDYTEADD. 0 13.0 9.0 0.006964895352911207 0.006964895352911207 0.0015360983102918587
/home/xiaowen/c_project/proteomics_cpp/testcases/data/st_no_digestion.msalign 600 1008 1350 63 15 9966.89054071875 9966.838422971192 2906 gi|16764848|ref|NP_460463.1| putative periplasmic protein [Salmonella typhimurium LT2] 13009.40887661499 29 113 A.ETSKLVIESGDSAQSRQEAAMEKEQWNDTRSLRQKVNTRAEKEWDKADAAFDNRDKCEQSANINAYWEPNTLRCLDRRTGRVITP. 0 7.0 6.0 3.669356980223948E-4 0.006971778262425501 0.0015349194167306216
/home/xiaowen/c_project/proteomics_cpp/testcases/data/st_no_digestion.msalign 568 975 1306 24 5 4095.9032301132816 4095.888776975095 2072 gi|16764429|ref|NP_460044.1| putative hydrogenase membrane component precurosr [Salmonella typhimurium LT2] 37605.86566753906 22 58 A.APKDNTWYAGAKLGWSQYHDTGFIHNDGPTHENQLGA.G 0 8.0 6.0 2.508910326283785E-6 0.007383036996122705 0.0015337423312883436
/home/xiaowen/c_project/proteomics_cpp/testcases/data/st_no_digestion.msalign 1115 1575 2106 17 10 10089.118070828124 10089.05808468384 1668 gi|16764234|ref|NP_459849.1| glutaredoxin 1 [Salmonella typhimurium LT2] 10089.058084683838 1 87 .MFTVIFGRPGCPYCVRAKELAEKLSKERDDFNYRYIDIHAEGITKADLEKTVGKPVETVPQIFVDQKHIGGCTDFEAWAKENLNLFA. 0 4.0 4.0 0.003818910099041827 0.007637820198083654 0.0015325670498084292
/home/xiaowen/c_project/proteomics_cpp/testcases/data/st_no_digestion.msalign 1501 2078 2776 25 7 8375.3036035 8375.250936704102 2828 gi|39546317|ref|NP_460424.2| putative cytoplasmic protein [Salmonella typhimurium LT2] 9025.52433605713 6 76 Y.MTVQDYLLKFRKISSLESLEKLFDHLNYTLTDDMDIVNMYRAADHRRAELVSGGRLFDVGQVPQSVWRYVQ. 0 5.0 5.0 1.5349497572068207E-4 0.007674748786034104 0.0015313935681470138
/home/xiaowen/c_project/proteomics_cpp/testcases/data/st_no_digestion.msalign 1500 2077 2775 17 9 8375.309986558594 8375.2509367041 2828 gi|39546317|ref|NP_460424.2| putative cytoplasmic protein [Salmonella typhimurium LT2] 9025.52433605713 6 76 Y.MTVQDYLLKFRKISSLESLEKLFDHLNYTLTDDMDIVNMYRAADHRRAELVSGGRLFDVGQVPQSVWRYVQ. 0 7.0 5.0 1.5827280888912248E-4 0.00823018606223437 0.001530221882172915
/home/xiaowen/c_project/proteomics_cpp/testcases/data/st_no_digestion.msalign 1367 1899 2538 109 22 17503.418015242194 17503.297346311036 6606 gi|16766712|ref|NP_462327.1| 30S ribosomal subunit protein S5 [Salmonella typhimurium LT2] 17592.32727642578 2 167 M.(A)[42.01]HIEKQAGELQEKLIAVNRVSKTVKGGRIFSFTALTVVGDGNGRVGFGYGKAREVPAAIQKAMEKARRNMINVALNNGTLQHPVKGVHTGSRVFMQPASEGTGIIAGGAMRAVLEVAGVHNVLAKAYGSTNPINVVRATIDGLENMNSPEMVAAKRGKSVEEILGK. 0 9.0 6.0 0.009921032191688446 0.009921032191688446 0.0015290519877675841
/home/xiaowen/c_project/proteomics_cpp/testcases/data/st_no_digestion.msalign 796 1213 1623 37 11 8139.228408921875 8139.172796445313 162 gi|16763472|ref|NP_459087.1| putative secreted protein [Salmonella typhimurium LT2] 10296.443510251465 22 96 A.AEQVSKQEISHFKLVKVGTINVSQSGGQISSPSDLREKLSELADAKGGKYYHIIAAREHGPNFEAVAEVYNDATK. 0 5.0 5.0 2.5205058511697557E-4 0.010334073989795998 0.0015278838808250573
/home/xiaowen/c_project/proteomics_cpp/testcases/data/st_no_digestion.msalign 2004 3163 4223 76 24 13357.72051434375 13357.631246762696 2584 gi|16764687|ref|NP_460302.1| 50S ribosomal subunit protein L20 [Salmonella typhimurium LT2] 13488.671743588868 2 118 M.ARVKRGVIARARHKKILKQAKGYYGARSRVYRVAFQAVIKAGQYAYRDRRQRKRQFRQLWIARINAAARQNGISYSKFINGLKKASVEIDRKILADIAVFDKVAFTALVEKAKAALA. 0 4.0 4.0 0.010892607832563482 0.010892607832563482 0.0015267175572519084
/home/xiaowen/c_project/proteomics_cpp/testcases/data/st_no_digestion.msalign 1989 3147 4202 64 15 9044.949171957032 9044.898699002684 6376 gi|16766598|ref|NP_462213.1| 50S ribosomal subunit protein L27 [Salmonella typhimurium LT2] 9175.939195828858 2 85 M.AHKKAGGSTRNGRDSEAKRLGVKRFGGEAVLAGSIIVRQRGTKFHAGTNVGCGRDHTLFAKADGKVKFEVKGPKNRKYISIVAE. 0 4.0 4.0 0.01207361725266969 0.01207361725266969 0.0015255530129672007
/home/xiaowen/c_project/proteomics_cpp/testcases/data/st_no_digestion.msalign 122 507 682 29 8 11048.841462062499 11048.841462062499 1452 gi|16764124|ref|NP_459739.1| hypothetical protein STM0759 [Salmonella typhimurium LT2] 13436.224081235352 25 128 A.AESNAQSSNGQANSAANAGQVAPDARQNVA(PNDVNNNDI)[-16.02]NTNGNTNSTMQHPDGSTMNHDGMTKDEEHKNTMCKDGRCPDINKKVETGNGVNNDVNTKTDGTTQ. 1 10.0 8.0 5.451082774773354E-4 0.014042602200979588 0.001524390243902439
/home/xiaowen/c_project/proteomics_cpp/testcases/data/st_no_digestion.msalign 387 793 1063 136 14 9044.93856465625 9044.898699002686 6376 gi|16766598|ref|NP_462213.1| 50S ribosomal subunit protein L27 [Salmonella typhimurium LT2] 9175.939195828858 2 85 M.AHKKAGGSTRNGRDSEAKRLGVKRFGGEAVLAGSIIVRQRGTKFHAGTNVGCGRDHTLFAKADGKVKFEVKGPKNRKYISIVAE. 0 10.0 8.0 0.014491955204515513 0.014491955204515513 0.0015232292460015233
/home/xiaowen/c_project/proteomics_cpp/testcases/data/st_no_digestion.msalign 515 922 1235 53 8 5288.95044828125 5288.937299924317 8022 gi|16767424|ref|NP_463039.1| DNA-binding protein HU-alpha [Salmonella typhimurium LT2] 9515.17277355713 41 90 D.AVQLVGFGTFKVNHRAERTGRNPQTGKEIKIAAANVPAFVSGKALKDAVK. 0 7.0 4.0 0.001332816149205058 0.014660977641255638 0.0015220700152207
/home/xiaowen/c_project/proteomics_cpp/testcases/data/st_no_digestion.msalign 3 375 506 89 10 5377.083936570311 5377.076475339356 7424 gi|16767124|ref|NP_462739.1| 50S ribosomal subunit protein L34 [Salmonella typhimurium LT2] 5377.076475339355 1 46 .MKRTFQPSVLKRNRSHGFRARMATKNGRQVLARRRAKGRARLTVSK. 0 8.0 5.0 0.007659520212914737 0.015319040425829473 0.001520912547528517
/home/xiaowen/c_project/proteomics_cpp/testcases/data/st_no_digestion.msalign 943 1366 1827 42 9 7264.632717093751 7264.61311932129 6494 gi|16766657|ref|NP_462272.1| putative periplasmic protein [Salmonella typhimurium LT2] 9528.873335080567 23 88 A.AVHQVNAEQAQNLQPMGTISVSQIGSTPMDMRQEIVAKAEKAGANSYRIIELKEGDNWHATAELYK. 0 5.0 4.0 4.878927719227092E-4 0.016100461473449405 0.001519756838905775
/home/xiaowen/c_project/proteomics_cpp/testcases/data/st_no_digestion.msalign 952 1376 1840 39 20 13672.566436875 13672.651796536868 1620 gi|16764209|ref|NP_459824.1| putative asparaginase [Salmonella typhimurium LT2] 32737.213960843506 181 313 V.GAVARDKFGNLAAATSTGGMTNKLPGRVGDSPLVGAGCYANNASVAVSCTGTGEVFIRTLAAYDIAALMEYGGLSLADACERVVMEKLPALGGSGGLIAVDHEGNVALPFNSEGMYRAWGYAGDTPTTGIYRE. 0 4.0 4.0 6.92539825262189E-4 0.018698575282079105 0.0015186028853454822
/home/xiaowen/c_project/proteomics_cpp/testcases/data/st_no_digestion.msalign 1680 2311 3087 51 25 17715.50793164844 17715.418695645752 7984 gi|16767405|ref|NP_463020.1| 50S ribosomal subunit protein L10 [Salmonella typhimurium LT2] 17846.459192471924 2 165 M.ALNLQDKQAIVAEVSEVAKGALSAVVADSRGVTVDKMTELRKAGREAGVYMRVVRNTLLRRVVEGTQFECLKDTFVGPTLIAYSMEHPGAAARLFKEFAKANAKFEVKAAAFEGELIPASQIDRLATLPTYEEAIARLMATMKEASAGKLVRTLAAVRDAKEAA. 0 4.0 4.0 0.0187212847854164 0.0187212847854164 0.0015174506828528073
/home/xiaowen/c_project/proteomics_cpp/testcases/data/st_no_digestion.msalign 1679 2310 3086 53 23 17715.577049078132 17715.418695645752 7984 gi|16767405|ref|NP_463020.1| 50S ribosomal subunit protein L10 [Salmonella typhimurium LT2] 17846.459192471924 2 165 M.ALNLQDKQAIVAEVSEVAKGALSAVVADSRGVTVDKMTELRKAGREAGVYMRVVRNTLLRRVVEGTQFECLKDTFVGPTLIAYSMEHPGAAARLFKEFAKANAKFEVKAAAFEGELIPASQIDRLATLPTYEEAIARLMATMKEASAGKLVRTLAAVRDAKEAA. 0 5.0 4.0 0.020136710578418766 0.020136710578418766 0.001516300227445034
/home/xiaowen/c_project/proteomics_cpp/testcases/data/st_no_digestion.msalign 203 600 806 17 4 2932.531299140625 2932.522665219727 5104 gi|16765959|ref|NP_461574.1| anti sigma-E factor [Salmonella typhimurium LT2] 24264.167574124756 149 175 V.SLGVPSEAAPVGSQQQQVQEQRRRINA.M 0 9.0 7.0 9.498445784422793E-6 0.02094987480520025 0.0015151515151515152
/home/xiaowen/c_project/proteomics_cpp/testcases/data/st_no_digestion.msalign 1657 2284 3051 46 12 12106.044326203126 12105.95568295044 938 gi|16763865|ref|NP_459480.1| putative cytoplasmic protein [Salmonella typhimurium LT2] 12063.945116239014 1 109 .(M)[42.01]FGKGGLGNLMKQAQQMQEKMQKMQEEIAQLEVTGESGAGLVKVTINGAHNCRRVEIDPSLLEDDKEMLEDLVAAAFNDAARRIEETQKEKMASVSSGMQLPPGFKMPF. 0 6.0 5.0 0.010497628554962845 0.02099525710992569 0.001514004542013626
/home/xiaowen/c_project/proteomics_cpp/testcases/data/st_no_digestion.msalign 370 772 1035 66 16 9044.941102499999 9044.898699002686 6376 gi|16766598|ref|NP_462213.1| 50S ribosomal subunit protein L27 [Salmonella typhimurium LT2] 9175.939195828858 2 85 M.AHKKAGGSTRNGRDSEAKRLGVKRFGGEAVLAGSIIVRQRGTKFHAGTNVGCGRDHTLFAKADGKVKFEVKGPKNRKYISIVAE. 0 5.0 4.0 0.021617661716355305 0.021617661716355305 0.0015128593040847202
/home/xiaowen/c_project/proteomics_cpp/testcases/data/st_no_digestion.msalign 1617 2243 2996 15 13 10629.682560433594 10629.612560433594 5306 gi|16766060|ref|NP_461675.1| putative transcriptional regulator [Salmonella typhimurium LT2] 13352.732820706788 23 118 I.(VIGKRLKISRVRADLTQAELG)[32.00]ALAGLDEESASARISSYEKEVHAPDFKLVCKLAAALDVPEAYFYAVDDELAELILQYHRFKKNNPGSTLILSGNI. 1 6.0 6.0 0.0010044663479984322 0.024229774400422198 0.0015117157974300832
/home/xiaowen/c_project/proteomics_cpp/testcases/data/st_no_digestion.msalign 997 1427 1908 69 13 14442.77066266406 14442.689371304934 6588 gi|16766703|ref|NP_462318.1| 50S ribosomal subunit protein L17 [Salmonella typhimurium LT2] 14442.689371304932 1 127 .MRHRKSGRQLNRNSSHRQAMFRNMAGSLVRHEIIKTTLPKAKELRRVVEPLITLAKTDSVANRRLAFARTRDNEIVAKLFNELGPRFASRAGGYTRILKCGFRAGDNAPMAYIELVDRSEKTEAAAE. 0 6.0 5.0 0.012548732866929752 0.025097465733859504 0.0015105740181268882
/home/xiaowen/c_project/proteomics_cpp/testcases/data/st_no_digestion.msalign 843 1261 1687 66 15 10076.488316039062 10076.478316039062 6342 gi|16766581|ref|NP_462196.1| 30S ribosomal subunit protein S15 [Salmonella typhimurium LT2] 10191.46906109375 2 89 M.SLSTEATAKIVSEFGRDANDTGSTDVQVALLTAQINHLQGHFAEHKKD(HHSRRGLLRMVSQRRKLLDYLKRKDVARYTALIERLGLRR)[16.05]. 1 12.0 8.0 0.07985729077021567 0.025210286779826674 0.0015094339622641509
/home/xiaowen/c_project/proteomics_cpp/testcases/data/st_no_digestion.msalign 374 776 1040 56 18 9044.922033898438 9044.898699002686 6376 gi|16766598|ref|NP_462213.1| 50S ribosomal subunit protein L27 [Salmonella typhimurium LT2] 9175.939195828858 2 85 M.AHKKAGGSTRNGRDSEAKRLGVKRFGGEAVLAGSIIVRQRGTKFHAGTNVGCGRDHTLFAKADGKVKFEVKGPKNRKYISIVAE. 0 6.0 4.0 0.02686936290498545 0.02686936290498545 0.0015082956259426848
/home/xiaowen/c_project/proteomics_cpp/testcases/data/st_no_digestion.msalign 266 666 894 47 6 2823.5071065859374 2823.4999830297857 354 gi|16763570|ref|NP_459185.1| aspartate 1-decarboxylase [Salmonella typhimurium LT2] 13992.038381772461 1 24 .MIRTMLQGKLHRVKVTQADLHYEG.S 0 6.0 5.0 3.263676692204342E-4 0.027088516545296037 0.0015071590052750565
/home/xiaowen/c_project/proteomics_cpp/testcases/data/st_no_digestion.msalign 957 1382 1848 72 21 13673.567705796873 13673.504202084963 6620 gi|16766719|ref|NP_462334.1| 50S ribosomal subunit protein L14 [Salmonella typhimurium LT2] 13673.504202084961 1 123 .MIQEQTMLNVADNSGARRVMCIKVLGGSHRRYAGVGDIIKITIKEAIPRGKVKKGDVLKAVVVRTKKGVRRPDGSVIRFDGNACVILNNNSEQPIGTRIFGPVTRELRNEKFMKIISLAPEVL. 0 4.0 4.0 0.013811439666473366 0.027622879332946732 0.0015060240963855422
/home/xiaowen/c_project/proteomics_cpp/testcases/data/st_no_digestion.msalign 1455 2011 2687 75 16 15478.147398374998 15477.992399411622 5400 gi|16766110|ref|NP_461725.1| DNA-binding protein [Salmonella typhimurium LT2] 15477.992399411622 1 133 .MNLMLQNLNNIRTLRAMAREFSIDVLEEMLEKFRVVTKERREEEELQQRQLAEKQEKINAFLELMKADGINPEELFAMDSAMPRSAKKRQPRPAKYRFTDFNGEEKTWTGQGRTPKPIAQALAAGKSLDDFLI. 0 7.0 7.0 0.010933015415404678 0.032799046246214034 0.002257336343115124
/home/xiaowen/c_project/proteomics_cpp/testcases/data/st_no_digestion.msalign 542 949 1271 72 12 6393.595706828124 6393.587953763428 7666 gi|16767245|ref|NP_462860.1| Sec-independent protein secretion pathway component [Salmonella typhimurium LT2] 29281.496580319825 2 57 M.(A)[42.01]VEDTQPLITHLIELRKRLLNCIVAVLLIFLALIYFANDIYHLVAAPLIKQMPQGA.T 0 8.0 5.0 0.0013061214776887782 0.033959158419908236 0.0030075187969924814
/home/xiaowen/c_project/proteomics_cpp/testcases/data/st_no_digestion.msalign 1830 2606 3480 21 7 8158.94281165625 8158.94281165625 1592 gi|16764195|ref|NP_459810.1| outer membrane protease precursor [Salmonella typhimurium LT2] 18539.917421536866 99 171 D.(WASIYGVVGVGYGKFQTTDYPTYKHDTSDYGFSYGA)[-43.95]GLQFNPMENVALDFSYEQSRIRSVDVGTWIAGVGYRF. 1 6.0 6.0 0.0016230024991709235 0.03534590562154748 0.003005259203606311
/home/xiaowen/c_project/proteomics_cpp/testcases/data/st_no_digestion.msalign 787 1204 1611 75 8 6537.644518624999 6537.62254925293 958 gi|16763875|ref|NP_459490.1| putative cytoplasmic protein [Salmonella typhimurium LT2] 17043.211942868653 98 159 G.YLVGGISPLGQKKRLPTLIDAPARTFATIYVSGGKRGLDIELAADDLAAILGAKFADIARRD. 0 8.0 6.0 0.0023804086755946073 0.040466947485108325 0.003003003003003003
/home/xiaowen/c_project/proteomics_cpp/testcases/data/st_no_digestion.msalign 1457 2013 2690 30 19 15478.088216859373 15477.992399411623 5400 gi|16766110|ref|NP_461725.1| DNA-binding protein [Salmonella typhimurium LT2] 15477.992399411622 1 133 .MNLMLQNLNNIRTLRAMAREFSIDVLEEMLEKFRVVTKERREEEELQQRQLAEKQEKINAFLELMKADGINPEELFAMDSAMPRSAKKRQPRPAKYRFTDFNGEEKTWTGQGRTPKPIAQALAAGKSLDDFLI. 0 6.0 4.0 0.014504437619397256 0.043513312858191766 0.003000750187546887
/home/xiaowen/c_project/proteomics_cpp/testcases/data/st_no_digestion.msalign 1662 2289 3058 106 15 12106.086951328125 12105.95568295044 938 gi|16763865|ref|NP_459480.1| putative cytoplasmic protein [Salmonella typhimurium LT2] 12063.945116239014 1 109 .(M)[42.01]FGKGGLGNLMKQAQQMQEKMQKMQEEIAQLEVTGESGAGLVKVTINGAHNCRRVEIDPSLLEDDKEMLEDLVAAAFNDAARRIEETQKEKMASVSSGMQLPPGFKMPF. 0 7.0 6.0 0.022785341273496226 0.04557068254699245 0.0029985007496251873
/home/xiaowen/c_project/proteomics_cpp/testcases/data/st_no_digestion.msalign 985 1415 1892 50 16 14442.742364937498 14442.689371304932 6588 gi|16766703|ref|NP_462318.1| 50S ribosomal subunit protein L17 [Salmonella typhimurium LT2] 14442.689371304932 1 127 .MRHRKSGRQLNRNSSHRQAMFRNMAGSLVRHEIIKTTLPKAKELRRVVEPLITLAKTDSVANRRLAFARTRDNEIVAKLFNELGPRFASRAGGYTRILKCGFRAGDNAPMAYIELVDRSEKTEAAAE. 0 4.0 4.0 0.022800935128089995 0.04560187025617999 0.00299625468164794
/home/xiaowen/c_project/proteomics_cpp/testcases/data/st_no_digestion.msalign 1010 1440 1926 39 13 8113.326955066408 8113.281858640137 1836 gi|16764314|ref|NP_459929.1| protein chain initiation factor IF-1 [Salmonella typhimurium LT2] 8244.32235546631 2 72 M.AKEDNIEMQGTVLETLPNTMFRVELENGHVVTAHISGKMRKNYIRILTGDKVTVELTPYDLSKGRIVFRSR. 0 5.0 4.0 0.023083546858637942 0.046167093717275884 0.0029940119760479044
/home/xiaowen/c_project/proteomics_cpp/testcases/data/st_no_digestion.msalign 1596 2210 2952 26 11 11546.241567539062 11546.241567539062 4682 gi|16765746|ref|NP_461361.1| putative cytoplasmic protein [Salmonella typhimurium LT2] 8737.707044797364 1 75 .(MPEMEK)[2808.53]EQLVEIANTVMPFGKYQGRRLIDLPEEYLLWFARKDQFPAGKLGELMQITLLIKTEGLTQLVQPLKRPL. 1 8.0 8.0 3.875784828381778E-5 0.0499326501253745 0.0029917726252804786
/home/xiaowen/c_project/proteomics_cpp/testcases/data/st_no_digestion.msalign 569 976 1307 42 6 3894.1233470703137 3894.112180905762 6642 gi|16766730|ref|NP_462345.1| 30S ribosomal subunit protein S10 [Salmonella typhimurium LT2] 11759.412664609375 1 33 .MQNQRIRIRLKAFDHRLIDQSTAEIVETAKRTG.A 0 4.0 4.0 6.671036119666663E-4 0.055369599793233304 0.0037369207772795215
/home/xiaowen/c_project/proteomics_cpp/testcases/data/st_no_digestion.msalign 1926 2853 3810 16 7 7433.991024953125 7433.976024953125 736 gi|16763763|ref|NP_459378.1| putative cytoplasmic protein [Salmonella typhimurium LT2] 10106.413343625489 3 69 V.MKNLIAELLLKLAQKEEESKELVAQVEALE(IIVTAMLRNMAQNEQEMLIRQVEGALEGVKPDASVPD)[-21.96].H 1 9.0 8.0 1.196784142504174E-5 0.055906001212876866 0.0037341299477221808
/home/xiaowen/c_project/proteomics_cpp/testcases/data/st_no_digestion.msalign 991 1421 1900 60 15 14442.754401679686 14442.689371304932 6588 gi|16766703|ref|NP_462318.1| 50S ribosomal subunit protein L17 [Salmonella typhimurium LT2] 14442.689371304932 1 127 .MRHRKSGRQLNRNSSHRQAMFRNMAGSLVRHEIIKTTLPKAKELRRVVEPLITLAKTDSVANRRLAFARTRDNEIVAKLFNELGPRFASRAGGYTRILKCGFRAGDNAPMAYIELVDRSEKTEAAAE. 0 4.0 4.0 0.02802619887098813 0.05605239774197626 0.0037313432835820895
/home/xiaowen/c_project/proteomics_cpp/testcases/data/st_no_digestion.msalign 1148 1621 2167 90 20 12762.06094478125 12761.967558103028 6608 gi|16766713|ref|NP_462328.1| 50S ribosomal subunit protein L18 [Salmonella typhimurium LT2] 12761.967558103028 1 117 .MDKKSARIRRATRARRKLKELGATRLVVHRTPRHIYAQVIAPNGSEVLVAASTVEKAIAEQLKYTGNKDAAAAVGKAVAERALEKGIKDVSFDRSGFQYHGRVQALADAAREAGLQF. 0 5.0 4.0 0.02936421361143312 0.05872842722286624 0.0037285607755406414
/home/xiaowen/c_project/proteomics_cpp/testcases/data/st_no_digestion.msalign 1562 2155 2879 15 12 10770.601981843753 10770.491872983399 624 gi|16763707|ref|NP_459322.1| putative cytoplasmic protein [Salmonella typhimurium LT2] 11851.001493649903 10 107 M.PTAIEKALDFIGGMNTSASVPHSMDESTAKGILKYLHDLGVPVSPEVVVARGEQEGWNPEFTKKVAGWAEKVASGNRILIKNPEYFSTYMQEQLKELV. 0 5.0 4.0 0.001606488785251885 0.05944008505431975 0.0037257824143070045
/home/xiaowen/c_project/proteomics_cpp/testcases/data/st_no_digestion.msalign 268 668 896 24 4 2926.443164375 2926.4307310156255 7904 gi|16767365|ref|NP_462980.1| transcriptional repressor [Salmonella typhimurium LT2] 12173.194353299561 66 91 A.FTGQPLPDDADLRKERSDEIPEAAKE.I 0 6.0 4.0 2.9828067835119984E-5 0.06580241131474959 0.0037230081906180195
/home/xiaowen/c_project/proteomics_cpp/testcases/data/st_no_digestion.msalign 201 597 802 16 6 3364.863271234376 3364.863271234376 8262 gi|16767544|ref|NP_463159.1| putative putrescine/ornithine transport protein [Salmonella typhimurium LT2] 47357.90213604492 1 125 .M(SSDADAHKVGLIPVTLMVSGNIMGSGVFLLPANLAATGGIAIYGWLVTIIGALALSMVYAKMSSLDPSPGGSYAYARRCFGPFLGYQTNVLYWLACWIGN)[-9998.05]IAMVVIGVGYLSYFFPILKDPLVL.T 1 9.0 9.0 2.144945500438996E-5 0.06604896437648948 0.003720238095238095
/home/xiaowen/c_project/proteomics_cpp/testcases/data/st_no_digestion.msalign 633 1042 1395 185 20 11526.338794265626 11526.338794265626 6614 gi|39546367|ref|NP_462331.2| 30S ribosomal subunit protein S14 [Salmonella typhimurium LT2] 11113.053682523194 2 96 M.KAREVKRVALAD(KYFAKRAELKAIISDV)[544.33]NATDEDRWNAVLKLQTLPRDSSPSRQRNRCRQTGRPHAFLRKFGLSRIKVREAAMRGEIPGLKKASW. 1 25.0 14.0 0.03604563932333716 0.06640518608405156 0.0037174721189591076
/home/xiaowen/c_project/proteomics_cpp/testcases/data/st_no_digestion.msalign 1214 1701 2274 44 20 18051.333409218758 18051.189726071778 6702 gi|16766760|ref|NP_462375.1| peptidyl-prolyl cis-trans isomerase A [Salmonella typhimurium LT2] 20319.481222348633 25 190 A.AKGDPHVLLTTSAGNIELELNSQKAPVSVKNFVDYVNSGFYNNTTFHRVIPGFMIQGGGFNEQMQQKKPNPPIKNEADNGLRNTRGTIAMARTADKDSATSQFFINVADNAFLDHGQRDFGYAVFGKVVKGMDVADKISQVPTHDVGPYQNVPTKPVVILSAKVLP. 0 5.0 5.0 0.0022355502261622844 0.09165755927265366 0.008172362555720654
/home/xiaowen/c_project/proteomics_cpp/testcases/data/st_no_digestion.msalign 506 913 1223 79 13 7709.9004249531245 7709.889826016843 4950 gi|16765882|ref|NP_461497.1| putative transcriptional regulator [Salmonella typhimurium LT2] 49441.89538403076 153 225 R.MVAQSDVSVLINGQSGTGKEIFAQAIHNASPRSNKPFVAINCGALPEQLLESELFGHARGAFTGAVSNREGLF.Q 0 9.0 8.0 2.8955711417223532E-5 0.13812605231108344 0.011135857461024499
/home/xiaowen/c_project/proteomics_cpp/testcases/data/st_no_digestion.msalign 1227 1715 2292 114 13 11205.3241294375 11205.2891294375 6636 gi|16766727|ref|NP_462342.1| 50S ribosomal subunit protein L23 [Salmonella typhimurium LT2] 11206.238477902833 1 100 .MIREERLLKVLRAPHVSEKASTAME(KTNT)[1.06]IVLKVAKDATKAEIKAAVQKLFEVEVEVVNTLVVKGKVKRHGQRIGRRSDWKKAYVTLKEGQNLDFVGGA(E)[-2.00]. 2 22.0 17.0 0.01031142401239886 0.13975879897608756 0.01112759643916914
/home/xiaowen/c_project/proteomics_cpp/testcases/data/st_no_digestion.msalign 526 933 1250 100 8 6394.596734656249 6394.527944760746 4102 gi|16765457|ref|NP_461072.1| putative outer membrane receptor [Salmonella typhimurium LT2] 112087.83976955933 342 399 R.DTQFELMLAIALVVMIIYLFLRNIPATIIPGVAVPLSLIGTFAVMVFLDFSINNLTLM.A 0 13.0 11.0 3.5096332459309456E-5 0.14610269922796637 0.011860637509266123
/home/xiaowen/c_project/proteomics_cpp/testcases/data/st_no_digestion.msalign 616 1025 1372 188 19 11543.343271648437 11543.323271648436 6614 gi|39546367|ref|NP_462331.2| 30S ribosomal subunit protein S14 [Salmonella typhimurium LT2] 11113.053682523194 2 96 M.(KAREVKRVALADKYFA)[42.01](KRAELKAIISD)[519.30]VNATDEDRWNAVLKLQTLPRDSSPSRQRNRCRQTGRPHAFLRKFGLSRIKVREAAMRGEIPGLKKASW. 1 18.0 13.0 0.08051952123552615 0.15190557896058732 0.011851851851851851
/home/xiaowen/c_project/proteomics_cpp/testcases/data/st_no_digestion.msalign 714 1129 1511 70 13 6377.595151695313 6377.5822507910125 6500 gi|16766660|ref|NP_462275.1| putative multidrug resistance protein [Salmonella typhimurium LT2] 34524.2361433081 2 58 M.KTLTRKLSRTAITLVLVILAFIAIFRAWVYYTESPWTRDARFSADVVAIAPDVAGLI.T 0 5.0 4.0 0.006795138521638525 0.15628818599768607 0.011843079200592153
/home/xiaowen/c_project/proteomics_cpp/testcases/data/st_no_digestion.msalign 1877 2694 3598 45 15 12290.604139242187 12290.709917264401 6980 gi|16766900|ref|NP_462515.1| C4-dicarboxylic acids transport protein [Salmonella typhimurium LT2] 45647.78961010498 1 116 .MKTSLFKSLYFQVLTAIAIGILLGHYYPELGAQMKPLGDAFVKLIKMIIAPVIFCTVVTGIAGMESMKAVGRTGAVALLYFEIVSTIALIIGLIIVNVVQPGAGMNVDPATLDAQA.V 0 6.0 5.0 0.0017712816905259999 0.161186633837866 0.011834319526627219
/home/xiaowen/c_project/proteomics_cpp/testcases/data/st_no_digestion.msalign 1567 2161 2887 23 13 10770.536234164063 10770.491872983399 624 gi|16763707|ref|NP_459322.1| putative cytoplasmic protein [Salmonella typhimurium LT2] 11851.001493649903 10 107 M.PTAIEKALDFIGGMNTSASVPHSMDESTAKGILKYLHDLGVPVSPEVVVARGEQEGWNPEFTKKVAGWAEKVASGNRILIKNPEYFSTYMQEQLKELV. 0 4.0 4.0 0.0039954992757636094 0.17979746740936242 0.012564671101256468
/home/xiaowen/c_project/proteomics_cpp/testcases/data/st_no_digestion.msalign 615 1024 1371 183 16 11543.344225624998 11543.289225624998 6614 gi|39546367|ref|NP_462331.2| 30S ribosomal subunit protein S14 [Salmonella typhimurium LT2] 11113.053682523194 2 96 M.KAREVKRVA(LADKYFA)[561.28]KRAELKAIISDVNATDEDRWNAVLKLQTLPRDSSPSRQRNRCRQTGRPHAFLRKFGLSRIKVREAAMRGEIPGLKKASW. 1 15.0 13.0 0.09626914144176187 0.18161831370027207 0.012555391432791729
/home/xiaowen/c_project/proteomics_cpp/testcases/data/st_no_digestion.msalign 191 586 787 65 10 6348.5748714374995 6348.503797727051 1108 gi|16763952|ref|NP_459567.1| putative inner membrane protein [Salmonella typhimurium LT2] 25827.148351865235 189 247 P.ALGFALLISMMLSSKLMPYLGLGFLIAAYTKLDIIAIALFAVVLAFIISQFLNTSQQEG. 0 5.0 4.0 0.012235190086345637 0.1957630413815302 0.013284132841328414
/home/xiaowen/c_project/proteomics_cpp/testcases/data/st_no_digestion.msalign 1141 1614 2158 88 20 12761.063620328123 12760.954931455079 3164 gi|16764980|ref|NP_460595.1| putative ABC-type transport system membrane component [Salmonella typhimurium LT2] 25567.802118497315 116 226 Y.NALNKYETEAAVVQGLNKRQVFLWIILPQVLLSSIPALTNQVINNLKDSTIVFLIQYTEFFARIQEVAATSFKFFHAYLFAAIVYLIGVTFIVGLTRFLEHRLLRHYGQGY. 0 5.0 5.0 0.012575537143447687 0.201208594295163 0.01327433628318584
/home/xiaowen/c_project/proteomics_cpp/testcases/data/st_no_digestion.msalign 845 1263 1690 49 12 10075.494641109377 10075.567381101071 1142 gi|16763969|ref|NP_459584.1| ferric enterobactin/enterochelin transporter [Salmonella typhimurium LT2] 34300.02796001953 115 212 F.STPLEQLFMAFSGALIASLIVAFTGSQGGGQLSPVRLTLAGVALGAVLEGLTSGIALLNPEVYDQLRFWQAGSLDIRSLQTLKVALAPVVIAGIVALF.L 0 8.0 8.0 3.8000857534608476E-5 0.21424726980550413 0.013264554163596167
/home/xiaowen/c_project/proteomics_cpp/testcases/data/st_no_digestion.msalign 977 1404 1878 47 20 16007.650885624998 16007.507131772461 8076 gi|16767451|ref|NP_463066.1| putative phage tail protein [Salmonella typhimurium LT2] 23763.634641843262 1 141 .MDKLLLPPPLASDERFSILANIAAERFAQIDLTALLVYLVDIVDASALPSLAEQFHVQGLEGWLFAANEQEKRELIKQAIELHKYKGTPWAVRRVLEILSLPGTISEWFEYGGKAYFFKVEIKLINQGMDENLFNNLVDLI.H 0 6.0 6.0 0.0028945026150261374 0.22287670135701257 0.013254786450662739
/home/xiaowen/c_project/proteomics_cpp/testcases/data/st_no_digestion.msalign 1271 1762 2355 42 15 14043.623852039062 14043.655828671872 7660 gi|16767242|ref|NP_462857.1| putative ubiquinone biosynthetic protein [Salmonella typhimurium LT2] 63369.52639217895 425 546 D.LWKTAKPFLESWIKDQVGIPALTRALKEKAPFWVEKMPEIPELVYDSLRQGKYLQHSVDKIARELQVNHVRQSQSRYLLGIGATLLLSGSFLLVNRPEWGLMPGWLMVGGVVVWLVGWRKTR. 0 4.0 4.0 0.01194551370322584 0.22696476036129096 0.013980868285504048
/home/xiaowen/c_project/proteomics_cpp/testcases/data/st_no_digestion.msalign 1341 1856 2480 132 20 14919.1174558125 14919.092516141356 3274 gi|16765036|ref|NP_460651.1| peptide transport protein [Salmonella typhimurium LT2] 36144.478410916745 2 133 M.IIFTLRRLLLLLVTLFFLTFIGFSLSYFTPHAPLQGASLWNAWVFWFNGLLHWDFGVSSINGQLISEQLKEVFPATMELCILAFGFALMVGIPVGMLAGVTRSKWPDRFISALALLGFSIPVFWLALLLTLF.F 0 8.0 8.0 0.0037581589609511773 0.2818619220713383 0.016176470588235296
/home/xiaowen/c_project/proteomics_cpp/testcases/data/st_no_digestion.msalign 1516 2105 2812 50 14 10849.75916977344 10849.67129345459 3172 gi|16764984|ref|NP_460599.1| putative inner membrane protein [Salmonella typhimurium LT2] 29696.24273510498 172 266 T.DAPRWLSFPGFVPVLRHLNDGTRFANVEEGIWTVERYLSLIAGELPRLRDDETGYGPRGKDFIIHVDIPRDIENAWQVLQADTTLRSALGQRALR. 0 7.0 5.0 0.007674382804765081 0.2993009293858382 0.01763409257898604
/home/xiaowen/c_project/proteomics_cpp/testcases/data/st_no_digestion.msalign 1198 1683 2250 93 17 15852.360314253909 15852.216402249753 4782 gi|16765796|ref|NP_461411.1| putative periplasmic protein [Salmonella typhimurium LT2] 39098.22964687866 1 142 .(M)[42.01]RYRVILFCLFGLLPVQLLWAAPAQRTFSDWQVTCNNQNFCVARNTGEHHGLVMTLSRSAGARTDAVLRIDRGGLAPPDAKEAAIAPRLLLDGKPLSFNSPHWRVSPWHLMTGDPATITAFLQTIQDAQAITLKNGVQTLSL.A 0 7.0 7.0 0.0024272920257550866 0.3301117155026918 0.018355359765051395
/home/xiaowen/c_project/proteomics_cpp/testcases/data/st_no_digestion.msalign 351 752 1008 78 17 8419.757127652345 8419.681341367184 7176 gi|16766998|ref|NP_462613.1| O-antigen ligase [Salmonella typhimurium LT2] 46062.06461544555 2 73 M.(L)[42.01]TTSLTLNKEKWKPIWNKALVFLFVATYFLDGITRYKHLIIILMVITAIYQVSRSPKSFPPLFKNSVFYSVA.V 0 4.0 4.0 0.013267065712696664 0.3316766428174166 0.018341892883345562
/home/xiaowen/c_project/proteomics_cpp/testcases/data/st_no_digestion.msalign 552 959 1284 39 10 6525.637554984376 6525.586622434079 8150 gi|16767488|ref|NP_463103.1| DNA-damage-inducible protein F [Salmonella typhimurium LT2] 47905.33693905395 2 63 M.PLFTSSDKALWRLALPMIFSNITVPLLGLVDTAVIGHLDSPVFLGGVAVGATATSFLFMLLL.F 0 7.0 4.0 0.007358464777656475 0.3605647741051673 0.020527859237536656
/home/xiaowen/c_project/proteomics_cpp/testcases/data/st_no_digestion.msalign 1786 2487 3322 22 11 9309.051696285158 9308.96030636353 8560 gi|16767698|ref|NP_463313.1| anaerobic ribonucleoside-triphosphate reductase [Salmonella typhimurium LT2] 80820.45850964112 394 477 N.ENGEQIHDGRNNLGVISLNLPRIALEAKGDETAFWKLLDERLALARKALMTRIARLEGVKARVAPILYMEGACGVRLKADDDVS.E 0 6.0 6.0 7.45698561888545E-5 0.40192685268314815 0.023443223443223443
/home/xiaowen/c_project/proteomics_cpp/testcases/data/st_no_digestion.msalign 1435 1982 2648 29 26 20431.469980546874 20431.324041562497 1602 gi|16764200|ref|NP_459815.1| putative ABC transporter ATPase component [Salmonella typhimurium LT2] 59778.26546688598 2 187 M.LVSSNVTMQFGSKPLFENISVKFGGGNRYGLIGANGSGKSTFMKILGGDLEPTLGNVSLDPNERIGKLRQDQFAFETFTVLDTVIMGHGELWEVKQERDRIYALPEMSEEDGYKVADLEVKYGEMDGYSAEARAGELLLGVGIPLEQHYGLMSEVAPGWKLRVLLAQALFSNPDILLLDEPTNNLD.I 0 4.0 4.0 0.0035904821354045143 0.43444833838394625 0.024890190336749635
/home/xiaowen/c_project/proteomics_cpp/testcases/data/st_no_digestion.msalign 795 1212 1622 40 10 8139.2218909765625 8139.172796445313 162 gi|16763472|ref|NP_459087.1| putative secreted protein [Salmonella typhimurium LT2] 10296.443510251465 22 96 A.AEQVSKQEISHFKLVKVGTINVSQSGGQISSPSDLREKLSELADAKGGKYYHIIAAREHGPNFEAVAEVYNDATK. 0 4.0 4.0 0.010779891649239457 0.44197555761881774 0.02487198244330651
/home/xiaowen/c_project/proteomics_cpp/testcases/data/st_no_digestion.msalign 354 756 1014 141 15 9044.95100301172 9044.938635068358 2066 gi|16764426|ref|NP_460041.1| beta-hydroxydecanoyl thioester dehydrase [Salmonella typhimurium LT2] 19148.760793881836 91 172 L.VGFYLGWLGGEGKGRALGVGEVKFTGQVLPTARKVTYRIHFKRIVNRRLIMGLADGEVLVDGRLIYTAHDLKVGLFQDTSAF. 0 6.0 6.0 0.027442145920585262 0.46651648064994944 0.02631578947368421
/home/xiaowen/c_project/proteomics_cpp/testcases/data/st_no_digestion.msalign 1832 2608 3483 10 14 12861.5415875 12861.5415875 1504 gi|16764150|ref|NP_459765.1| putative pectinesterase [Salmonella typhimurium LT2] 46049.95704098266 1 122 .(MNTLSVSRLALALAFGVTLSACSSTPPD)[127.05]QIPSDQTAPGTASRPILSANEAKNFVAARYFASLTPNTAPWSPSPITLPAQPDFVVGPAGTPGVTHTSIQAAVDAAMVKRTNKRQYIAIMPGDY.Q 1 5.0 5.0 0.0028511328052361258 0.4685857792556531 0.026296566837107377
/home/xiaowen/c_project/proteomics_cpp/testcases/data/st_no_digestion.msalign 1941 2884 3851 24 25 21159.18897798047 21159.233679013676 7924 gi|16767375|ref|NP_462990.1| putative transaldolase [Salmonella typhimurium LT2] 23624.402174191895 2 200 M.ELYLDTANVAEVERLARIFPIAGVTTNPSIVAASKESIWDVLPRLQNAIGEEGTLFAQTMSRDAKGMVEEAKRLNNAIPGIVVKIPVTAEGLAAIKLLKKEGIVTLGTAVYSASQGLLAALAGAKYVAPYVNRVDAQGGDGIRMVQELQTLLEHHAPDSMVLAASFKTPRQALDCLLAGCQAITLPLDVAQQMLNTPAV.E 0 4.0 4.0 0.004410013389481016 0.4718714326744687 0.026277372262773723
/home/xiaowen/c_project/proteomics_cpp/testcases/data/st_no_digestion.msalign 119 504 678 61 8 4415.42176028125 4415.434278684079 3972 gi|16765392|ref|NP_461007.1| DD-carboxypeptidase [Salmonella typhimurium LT2] 43127.08493252319 2 43 M.LLKRRLFIAASLFAMHLSPALAADAVSFAPQPPAIDAGAWVL.M 0 5.0 4.0 0.008960980708049661 0.474931977526632 0.0262582056892779
/home/xiaowen/c_project/proteomics_cpp/testcases/data/st_no_digestion.msalign 798 1215 1626 139 9 10619.491519625 10619.364240842286 6496 gi|16766658|ref|NP_462273.1| putative cytoplasmic protein [Salmonella typhimurium LT2] 10708.394170957032 2 90 M.(N)[42.01]VYTFDFNDIKNQSDFYREFTQTFGLASEKVSDLDTLWDAVMSDILPLPLEIEFVHLPDKLRRRYGALILLFDEAEEELEGRLRFNVRH. 0 6.0 5.0 0.48591445587320425 0.48591445587320425 0.026239067055393587
/home/xiaowen/c_project/proteomics_cpp/testcases/data/st_no_digestion.msalign 869 1289 1724 104 17 9698.29391039844 9698.376547055665 3160 gi|16764978|ref|NP_460593.1| putative ABC transporter permease component [Salmonella typhimurium LT2] 23596.1850912146 129 215 L.QVIINIELPQMLRFSVPGIINEFSSVLKATPFAYTVGIAEITKQAMSLTAITLNGLQIYTLAGVLYFIIYKVFTLLAGVFEKKYRIS. 0 7.0 5.0 0.02483850178043064 0.49677003560861277 0.026219956300072834
/home/xiaowen/c_project/proteomics_cpp/testcases/data/st_no_digestion.msalign 842 1260 1686 46 14 10075.480577390626 10075.573782163086 8978 gi|17233439|ref|NP_490558.1| PsiA [Salmonella typhimurium LT2] 28890.093927579346 1 90 .(M)[42.01]IHSSHALVTLKPARQAALQAILTVEESRRRGARLPALPHARTFLRVLSGSSRINTTVAQRIPGLNWEPKNRLTSLKQVEEALDRLISSH.G 0 4.0 4.0 0.00906108306853567 0.4983595687694618 0.026200873362445413
/home/xiaowen/c_project/proteomics_cpp/testcases/data/st_no_digestion.msalign 479 886 1187 15 12 7977.955066640626 7977.9780027441375 2374 gi|16764582|ref|NP_460197.1| putative peptidase T [Salmonella typhimurium LT2] 44991.87104244751 212 284 A.SVNIKIVGNNVHPGTAKGVMVNALSLAARIHAEVPADEAPETTEGYEGFYHLASMKGTVDRAEMHYIIRDFDR.K 0 4.0 4.0 1.0648781777261822E-4 0.5184022472520091 0.02618181818181818
/home/xiaowen/c_project/proteomics_cpp/testcases/data/st_no_digestion.msalign 789 1206 1614 61 16 9517.33554075 9517.234163480225 7666 gi|16767245|ref|NP_462860.1| Sec-independent protein secretion pathway component [Salmonella typhimurium LT2] 29281.496580319825 1 85 .(M)[42.01]AVEDTQPLITHLIELRKRLLNCIVAVLLIFLALIYFANDIYHLVAAPLIKQMPQGATMIATDVASPFFTPIKLTFMVSLILSAP.V 0 4.0 4.0 0.013777333018181646 0.5235386546909025 0.02616279069767442
/home/xiaowen/c_project/proteomics_cpp/testcases/data/st_no_digestion.msalign 1121 1588 2123 94 9 9228.06143550781 9228.081678586426 8580 gi|16767708|ref|NP_463323.1| putative arginine repressor [Salmonella typhimurium LT2] 18266.679712491456 53 137 R.LLKLLGAIKIRNTKGQKIYSVNPQRRPSPDAGRSIAEMVVSVEHNSEFILIHTAAGYGRAVARILDYHALPEILGVVAGSSIVWV.A 0 10.0 10.0 1.029546973071132E-4 0.5495151903257155 0.027596223674655047
/home/xiaowen/c_project/proteomics_cpp/testcases/data/st_no_digestion.msalign 1563 2156 2880 30 11 10770.596745636722 10770.491872983399 624 gi|16763707|ref|NP_459322.1| putative cytoplasmic protein [Salmonella typhimurium LT2] 11851.001493649903 10 107 M.PTAIEKALDFIGGMNTSASVPHSMDESTAKGILKYLHDLGVPVSPEVVVARGEQEGWNPEFTKKVAGWAEKVASGNRILIKNPEYFSTYMQEQLKELV. 0 4.0 4.0 0.015239439446274861 0.5638592595121699 0.02830188679245283
/home/xiaowen/c_project/proteomics_cpp/testcases/data/st_no_digestion.msalign 1696 2337 3122 11 8 8719.4925365625 8719.529363828122 8164 gi|16767495|ref|NP_463110.1| quinone oxidoreductase [Salmonella typhimurium LT2] 35243.43764324707 73 154 V.GNGVEHIRVGDRVVYAQSTLGAYSSVHNVTADKAAILPDAISFEQAAASFLKGLTVFYLLRKTYEVKPDEPFLFHAAAGGVG.L 0 4.0 4.0 1.2279445842427027E-4 0.6248227557219473 0.02973168963016679
/home/xiaowen/c_project/proteomics_cpp/testcases/data/st_no_digestion.msalign 1000 1430 1912 23 12 8113.340273546876 8113.224020200196 416 gi|16763601|ref|NP_459216.1| putative cytoplasmic protein [Salmonella typhimurium LT2] 15141.941797452393 2 70 M.YDNLKSLGITNPEEIDRYSLRQEANNDILKIYFQKDRGEFFAKSVKFKYPRQRKTVVADGIGQGYKEVQ.E 0 4.0 4.0 0.005646166663792021 0.6380168330084983 0.029710144927536233
/home/xiaowen/c_project/proteomics_cpp/testcases/data/st_no_digestion.msalign 1138 1611 2154 89 19 12761.041416347656 12760.975858884274 5752 gi|16766286|ref|NP_461901.1| gcv operon regulator [Salmonella typhimurium LT2] 34540.169260220944 1 112 .(M)[42.01]SKRLPPLNALRVFDAAARHLSFTRAAEELFVTQAAVSHQIKSLEDFLGLKLFRRRNRSLLLTEEGQSYFLDIKEIFSQLTEATRKLQARSAKGALTVSLPPSFAIQWLVPR.L 0 5.0 5.0 0.014669678645927662 0.6454658604208171 0.029688631426502535
/home/xiaowen/c_project/proteomics_cpp/testcases/data/st_no_digestion.msalign 1101 1556 2080 14 7 7446.832323546876 7446.889784055172 2842 gi|16764816|ref|NP_460431.1| replication termination protein [Salmonella typhimurium LT2] 35578.93446941894 1 65 .MSRYDLVERLNGTFRQIEQHLAALTDNLQQHSLLIARVFSLPQVTKEAEHAPLDTIEVTQHLGKE.A 0 4.0 4.0 0.006432609038404488 0.7011543851860892 0.029667149059334298
/home/xiaowen/c_project/proteomics_cpp/testcases/data/st_no_digestion.msalign 1652 2279 3044 48 12 11210.745223796877 11210.88941021484 4066 gi|16765439|ref|NP_461054.1| GDP-D-mannose dehydratase [Salmonella typhimurium LT2] 42069.23163052124 270 373 Q.LGIKLRFEGEGINEKGIVVSVTGHDAPGVKPGDVIVAVDPRYFRPAEVETLLGDPSKAHEKLGWKPEITLSEMVSEMVANDLEAAKKHSLLKSHGYEVAIALES. 0 5.0 4.0 0.019163532878460624 0.7090507165030431 0.02964569775849602
/home/xiaowen/c_project/proteomics_cpp/testcases/data/st_no_digestion.msalign 581 989 1324 44 12 9850.825007375002 9850.764925198979 6182 gi|16766501|ref|NP_462116.1| adenylyl transferase for glutamine synthetase [Salmonella typhimurium LT2] 108425.38737316651 1 88 .MTPLSSPLSQYWQTVVERLPEGFTETSLSVQAKSVLTFSDFALDSVIAHPEWLAELESASPQADEWRHYAGWLQEALAGVCDDASLMR.E 0 4.0 4.0 0.011997725036696579 0.7198635022017947 0.029624277456647398
/home/xiaowen/c_project/proteomics_cpp/testcases/data/st_no_digestion.msalign 528 935 1252 106 10 6394.599028359375 6394.553331571045 3842 gi|16765326|ref|NP_460941.1| putative permease [Salmonella typhimurium LT2] 32493.734552579346 247 306 A.YVNPVVAVLLGTGLGGERLSPVEWAALGVIVFAVVLVTLGKYLFPVKAVVTPCKTEDSRQ. 0 5.0 4.0 0.0673790623662014 0.7411696860282154 0.0296028880866426
/home/xiaowen/c_project/proteomics_cpp/testcases/data/st_no_digestion.msalign 356 758 1016 150 21 13870.591350437502 13870.635870175778 8702 gi|16767768|ref|NP_463383.1| type I restriction enzyme specificity protein [Salmonella typhimurium LT2] 52162.5976125769 344 469 W.LRSSYLQDIINSEIKSGAQGKLALARIKSLPLILPPLQEQHEIVRRVEQLFAYADTIEKQVNNALTRVNSLTQSILAKAFRGELTAQWRAENPELISGENSAAALLEKIKAERAASGGKKTSRKKA. 0 6.0 6.0 0.03793581312060869 0.7587162624121737 0.02958152958152958
/home/xiaowen/c_project/proteomics_cpp/testcases/data/st_no_digestion.msalign 1854 2648 3536 99 14 12159.528663570312 12159.57216091675 8778 gi|16767806|ref|NP_463421.1| pyruvate formate lyase-activating enzyme [Salmonella typhimurium LT2] 32258.24780102295 178 287 A.WKSECHHRLTGRDNTHIKHSIRFLAARGKLAELRLLVIPGQVDYAAHIDSLAAFITSLGEVPVRLNAFHAHGVYGEAKAWPGATPQEVERLADGLRARGVAKLILPALYL. 0 12.0 5.0 0.03490697368752204 0.7679534211254849 0.03028118240807498
/home/xiaowen/c_project/proteomics_cpp/testcases/data/st_no_digestion.msalign 1921 2814 3758 14 42 32684.81492428125 32684.50573559326 8532 gi|16767684|ref|NP_463299.1| putative antibiotic maturation protein [Salmonella typhimurium LT2] 48663.59182949585 141 439 L.AARAEQASLKADKRITNTEGGSFNSHYGIKVFGNSHGMLQGYCSTRHSLSSCVIAEENGDMERDYAYTIGRAMADLQAPEWVGAECARRTLSRLSPRKLSTMKAPVIFANEVATGLFGHLVGAIAGGAVYRKSTFLLDSLGKQILPEWLTIEEHPHLLKGLASSPFDSEGVRTERRDIVKDGVLTQWLLTNYSARKLGLKSTGHAGGIHNWRIAGQGLNFEQLLKEMGTGLVVTELMGQGVSGITGDYSRGAAGFWVENGEIQYPVSEITIAGNLKEMWRNIVTVGDDIETRSNIQCGS.V 0 4.0 4.0 1.1727519198175676E-4 0.790802892020792 0.03025936599423631
/home/xiaowen/c_project/proteomics_cpp/testcases/data/st_no_digestion.msalign 317 717 962 22 12 8517.718350375002 8517.635519223628 7642 gi|16767233|ref|NP_462848.1| putative transport protein [Salmonella typhimurium LT2] 33562.75118084472 92 165 T.VLTPLYITLIYDVMSQRRLRWGYAFSALLAVIGAGIIRYDRVTDHFWVGLLLVQLSNISFAIGMVGYKRLMETR.P 0 4.0 4.0 1.5850572182641583E-4 0.8013033315453485 0.03095752339812815
/home/xiaowen/c_project/proteomics_cpp/testcases/data/st_no_digestion.msalign 809 1226 1640 68 9 6392.61777896875 6392.667501645506 4256 gi|16765534|ref|NP_461149.1| fructose-specific transport protein [Salmonella typhimurium LT2] 57679.74790783447 297 360 P.GLTPGLIGGMLAVSTGSGFIGGIIAGFLAGYMAKLISTKLKLPQSMEALKPILIIPLISSLVVG.L 0 9.0 7.0 2.0079798875904175E-4 0.8359641669984905 0.031654676258992806
/home/xiaowen/c_project/proteomics_cpp/testcases/data/st_no_digestion.msalign 1986 3144 4198 79 17 9042.942310386718 9042.86401196045 8910 gi|17233419|ref|NP_490523.1| putative inner membrane protein [Salmonella typhimurium LT2] 17116.203489499512 77 161 G.GQAVFLNTLGLRPDCLLPRTASATQLKAAVSSWLRRARGWRQATTESLSLRERQALCATLAGLSARTAPGSASAPKPFTAIAAAR. 0 6.0 5.0 0.039632432426146474 0.8719135133752225 0.03235082674335011
/home/xiaowen/c_project/proteomics_cpp/testcases/data/st_no_digestion.msalign 247 645 866 42 6 6247.03710290625 6247.049921231687 5474 gi|16766146|ref|NP_461761.1| putative flavoprotein [Salmonella typhimurium LT2] 54725.84311886352 386 440 C.RQHGRDIARQWALAPLPETTQQIAPVEETITCTAADLGPKMQCSVCQWIYDPALG.E 0 4.0 4.0 2.1357990775460145E-4 0.8773867768147194 0.032327586206896554
/home/xiaowen/c_project/proteomics_cpp/testcases/data/st_no_digestion.msalign 987 1417 1895 136 17 14441.781902902345 14441.984804349362 6256 gi|16766538|ref|NP_462153.1| putative transport protein [Salmonella typhimurium LT2] 48681.927782254636 315 443 G.WVKVVSVILNIFAVMTAFFGVYLGFREATQGIVMNILRRKMPAEKIKENLVQRGIMIFAILLAWSAIVLNAPVLSFTSICSPIFGMVGCLIPAWLVYKVPALHKYKGASLYLIIITGLLLCVSPFLAFS. 0 6.0 6.0 0.04442835024294209 0.8885670048588418 0.03230437903804738
/home/xiaowen/c_project/proteomics_cpp/testcases/data/st_no_digestion.msalign 521 928 1243 102 8 6394.590875281249 6394.531557279053 2200 gi|16764495|ref|NP_460110.1| putative curli operon transcriptional regulator [Salmonella typhimurium LT2] 30531.95692272705 2 59 M.(P)[42.01]RLLILVAVLLLSGCLTAPPKQAAKPTLMPRAQSYKDLTHLPAPTGKIFVSVYNIQDE.T 0 7.0 6.0 0.02240603880782601 0.9186475911208665 0.03299856527977044
/home/xiaowen/c_project/proteomics_cpp/testcases/data/st_no_digestion.msalign 1187 1667 2228 28 8 7272.03159465625 7271.942014890134 7836 gi|16767331|ref|NP_462946.1| putative Na+/galactoside symporter [Salmonella typhimurium LT2] 49818.180238919675 2 69 M.KLSIVEKIGFGAGDMAINVVIIAMQLLLAYFYTDIYGLSAADVGVLFVVVRMIDAIIDPAMGVLTDKL.N 0 4.0 4.0 0.011700551060629266 0.9360440848503412 0.03369175627240143
/home/xiaowen/c_project/proteomics_cpp/testcases/data/st_no_digestion.msalign 614 1023 1370 93 18 11543.356895304687 11543.359296994626 1150 gi|16763973|ref|NP_459588.1| 2,3-dihydroxybenzoate-AMP ligase [Salmonella typhimurium LT2] 59731.54228420776 435 536 Q.INRGGEKIAAEEIENLLLRHPVVIHAALVSMEDELLGEKSCAYLVVKEPLRAVQVRRFLREQGVAEFKLPDRVECVASLPLTPVGKVDKKQLRQRLASRSPL. 0 5.0 4.0 0.046905021290495647 0.9381004258099129 0.0336676217765043
/home/xiaowen/c_project/proteomics_cpp/testcases/data/st_no_digestion.msalign 1221 1709 2284 38 17 11206.328899949222 11206.210199552 7244 gi|16767032|ref|NP_462647.1| putative purine/xanthine transport protein [Salmonella typhimurium LT2] 48928.30660839599 128 233 T.MMAALFGTLMLASCTEMVLSRILHLARRIITPLVSGVVVMIIGLSLIQVGLTSIGGGYAAMSDNTFGAPKNLLLAGVVLAIIILLNRQRNPYLRVASLVIAMAAGY.L 0 5.0 5.0 1.5912943291785344E-4 0.9510297443128122 0.03364352183249821
/home/xiaowen/c_project/proteomics_cpp/testcases/data/st_no_digestion.msalign 619 1028 1376 170 18 11527.336622632814 11527.25863476318 7138 gi|16766979|ref|NP_462594.1| L-lactate dehydrogenase [Salmonella typhimurium LT2] 42857.98211880249 282 396 D.GVLSSARALPAIADAVKGDIAILADSGIRNGLDVVRMIALGADTVLLGRAYLYALATAGKAGVANLLDLIEKEMKVAMTLTGAKSISEISGDSLVQELGKSLPAALAPMSKGDAA. 0 7.0 7.0 0.04774637655466339 0.9549275310932679 0.033619456366237484
/home/xiaowen/c_project/proteomics_cpp/testcases/data/st_no_digestion.msalign 435 842 1128 53 13 7825.930015003906 7825.94056530518 8630 gi|16767733|ref|NP_463348.1| putative DNA helicases [Salmonella typhimurium LT2] 132378.04018230957 996 1061 A.LTFDYKERKDLKTAETKIYTLHGVEQHDNFLNQTFENTDKHITIVSPWLTWQKLEQTGFLDSMITA.C 0 8.0 7.0 1.9935951372221359E-4 0.9614172531459613 0.034310221586847746
/home/xiaowen/c_project/proteomics_cpp/testcases/data/st_no_digestion.msalign 245 643 863 70 6 6247.033440796875 6247.004049497072 4604 gi|16765707|ref|NP_461322.1| putative cytoplasmic protein [Salmonella typhimurium LT2] 9972.923879819336 1 57 .MIAEFESRILALIDDMVEHASDDELFASGYLRGHLTLAIAELESGDDHSVEAVYANV.S 0 6.0 5.0 0.013222378496432392 0.9652336302395645 0.03428571428571429
/home/xiaowen/c_project/proteomics_cpp/testcases/data/st_no_digestion.msalign 316 716 960 93 14 8517.661439976564 8517.561269956055 6240 gi|16766530|ref|NP_462145.1| putative inner membrane protein [Salmonella typhimurium LT2] 11541.227422910157 27 99 S.ASRRDWLETTGAYDRGWNTVLSLRSWALVGSSVMAIWTIRHPNMLVRWAKRGLGIWSAWRLVKTTLRQQQLRG. 0 4.0 4.0 0.032544447250672945 1.0414223120215342 0.034261241970021415
/home/xiaowen/c_project/proteomics_cpp/testcases/data/st_no_digestion.msalign 90 469 631 57 9 11063.957599148434 11063.822340207516 5378 gi|16766099|ref|NP_461714.1| tricarboxylic transport [Salmonella typhimurium LT2] 53017.26645870727 1 106 .(M)[42.01]DTWIYLSQGFAVAMTPENLVIALIGCFVGTIVGLLPGLGPINGVAILLPLAFALHLPAESALILLATVYIGCEYGGRISSILLNVPGDAAAIMTALDGYPMAQQG.K 0 5.0 5.0 0.01002890346915833 1.0730926711999413 0.03566333808844508
/home/xiaowen/c_project/proteomics_cpp/testcases/data/st_no_digestion.msalign 607 1015 1359 79 13 9533.33148184375 9533.210653500975 8032 gi|16767429|ref|NP_463044.1| phosphoribosylglycinamide synthetase [Salmonella typhimurium LT2] 45892.11824627441 1 93 .MKVLVIGNGGREHALAWKAAQSPLVDTVFVAPGNAGTALEPALQNVAIGVTDIPALLSFAQHEKIDLTIVGPEAPLVIGVVDAFRAAGLKIFG.P 0 4.0 4.0 0.02557381497324537 1.0741002288763055 0.03563791874554526
/home/xiaowen/c_project/proteomics_cpp/testcases/data/st_no_digestion.msalign 1348 1867 2495 116 39 26846.585956253908 26846.64525433105 6950 gi|16766885|ref|NP_462500.1| putative inner membrane protein [Salmonella typhimurium LT2] 46877.53336544555 191 439 K.GKELKDDPEYQRRLAEGLIKPAQKESKNTVVTSRAKLSVALFLTSAIVIVLLGLIPALRPMVETAKGLQPLSMSAAIQITMLSFACLIVLLCRPQVDQIISGTVFRAGALAIVCAFGLAWMSETFVNGHIALIKAEVQTLLQQHTWLIAIMMFFVSAMVSSQAATTLILLPLGLALGLPAYALIGSWPAVNGYFFIPVAGQCLAALAFDDTGTTRIGKYVLNHSFMRPGLVNVIVSVIVGLLIGKMVLA. 0 6.0 6.0 0.028532367429843625 1.1127623297639013 0.03632478632478633
/home/xiaowen/c_project/proteomics_cpp/testcases/data/st_no_digestion.msalign 508 915 1226 97 14 7709.887167507812 7709.8898260168435 4950 gi|16765882|ref|NP_461497.1| putative transcriptional regulator [Salmonella typhimurium LT2] 49441.89538403076 153 225 R.MVAQSDVSVLINGQSGTGKEIFAQAIHNASPRSNKPFVAINCGALPEQLLESELFGHARGAFTGAVSNREGLF.Q 0 9.0 8.0 2.502398007957205E-4 1.1937070140319515 0.03772241992882562
/home/xiaowen/c_project/proteomics_cpp/testcases/data/st_no_digestion.msalign 113 498 670 47 8 4568.47349809375 4568.47349809375 2230 gi|16764510|ref|NP_460125.1| putative transport protein [Salmonella typhimurium LT2] 43739.90258999389 1 40 .(MSPSDVPINW)[-.86]KRNLTVTWLGCFLTGAAFSLVMPFLPLYVE.Q 1 6.0 6.0 0.03583965086640701 1.257866853937762 0.03982930298719772
/home/xiaowen/c_project/proteomics_cpp/testcases/data/st_no_digestion.msalign 566 973 1303 50 12 9980.868686546875 9980.95139141602 9048 gi|17233470|ref|NP_490592.1| oriT nickase/helicase [Salmonella typhimurium LT2] 191565.82770367188 102 192 R.LTEAHNQAVDIAVRQVEALASTRVMTDGQSETVLTGNLVMALFNHDTSRDQEPQLHTHAVVVNVTQHDGEWKTLSSDKVGKTGFIENVYAN.Q 0 5.0 5.0 2.2946786982906074E-4 1.2829940608505708 0.03980099502487562
/home/xiaowen/c_project/proteomics_cpp/testcases/data/st_no_digestion.msalign 874 1294 1731 48 13 10059.481131523436 10059.38583202881 9006 gi|17233452|ref|NP_490572.1| OrfG2 [Salmonella typhimurium LT2] 18464.817602353516 2 85 M.(H)[42.01]KSDAEKMESIIDKHDRIYRRQVRVFKNLGFLSIITAVLSVITALFSTSLLLKYTLCVVICVCLIYLVFMFFCLDRYIALSRQT.L 0 4.0 4.0 0.014139199421839554 1.2866671473873994 0.03977272727272727
/home/xiaowen/c_project/proteomics_cpp/testcases/data/st_no_digestion.msalign 217 614 824 46 9 4929.728021320314 4929.691465573734 5512 gi|16766165|ref|NP_461780.1| formate hydrogen-lyase transcriptional activator [Salmonella typhimurium LT2] 78646.77528591675 513 553 Q.TDVRLIAATNRDLKKMVADREFRNDLYYRLNVFPIQLPPLR.E 0 5.0 5.0 3.77060359512367E-4 1.2895523357120549 0.0397444996451384
/home/xiaowen/c_project/proteomics_cpp/testcases/data/st_no_digestion.msalign 1963 3102 4142 10 14 11759.490556562501 11759.470556562499 3374 gi|16765087|ref|NP_460702.1| oligopeptide transport protein [Salmonella typhimurium LT2] 37181.87880535644 233 335 G.ICDKVLV(MYAGRTMEYGKARDVFYQPVHPYSIGLLNAVPRLDSEGAEMLTIPGNPPNLLRLPKGCPFQPRCPHAMEICNNAPPLEAFSPGRLRACF)[29.57]KPVEELL. 1 5.0 5.0 0.05148171785708757 1.3485092926293127 0.0425531914893617
/home/xiaowen/c_project/proteomics_cpp/testcases/data/st_no_digestion.msalign 1940 2880 3846 28 11 8982.77258748047 8982.65128155274 442 gi|16763614|ref|NP_459229.1| putative outer membrane protein precursor [Salmonella typhimurium LT2] 89585.15330334229 1 83 .(M)[42.01]AMKKLLIASLLFSSATVYGAEGFVVKDIHFEGLQRVAVGAALLSMPVRTGDTVNDEDISNTIRALFATGNFEDVRVLRDGNT.L 0 4.0 4.0 0.010784235690490685 1.3588136970018263 0.04323175053153792
/home/xiaowen/c_project/proteomics_cpp/testcases/data/st_no_digestion.msalign 586 994 1331 147 13 8985.905731558596 8985.793592648924 8666 gi|16767751|ref|NP_463366.1| uxu operon transcriptional repressor [Salmonella typhimurium LT2] 29577.95916958374 2 80 M.KSNTSQQRPYQEVGAMIRDLIVQTPYRPGERLPPEREIAERLNVTRTVVREALIMLEIKGLVEVRRGAGIYVLDSADNN.E 0 8.0 8.0 0.01338096883339373 1.3648588210061605 0.04320113314447592
/home/xiaowen/c_project/proteomics_cpp/testcases/data/st_no_digestion.msalign 390 796 1067 82 11 7882.958824230468 7882.92496319336 1830 gi|16764311|ref|NP_459926.1| SlsA [Salmonella typhimurium LT2] 24206.31694241089 155 225 Q.EITLARIVQAGVVPMDTAAVASELQGTWNREDAAAWADVYTQVFPAYQLLIESYSKAQDVVKNNEMLDSQR. 0 6.0 5.0 0.027807309927357547 1.3903654963678773 0.043170559094125975
/home/xiaowen/c_project/proteomics_cpp/testcases/data/st_no_digestion.msalign 523 930 1246 97 7 6394.600897863281 6394.53962536377 4216 gi|16765514|ref|NP_461129.1| vancomycin sensitivity [Salmonella typhimurium LT2] 27472.551542478028 1 55 .(M)[42.01]LKRVFYSLLVLVGLLLLTVLGLDRWMSWKTAPYIYDELQDLPYRQVGVVLGTAK.Y 0 6.0 6.0 0.0375983437595974 1.3911387191051037 0.04314002828854314
/home/xiaowen/c_project/proteomics_cpp/testcases/data/st_no_digestion.msalign 114 499 671 40 6 4568.477429976563 4568.468877988282 3558 gi|16765180|ref|NP_460795.1| putative exported protein [Salmonella typhimurium LT2] 10616.525942044678 19 58 S.MVVLVVGLALWFFVNRASSRANEQIELLEALLDQQKRQNA.L 0 7.0 6.0 4.6224909300002546E-4 1.4510000990254417 0.04381625441696113
/home/xiaowen/c_project/proteomics_cpp/testcases/data/st_no_digestion.msalign 781 1198 1603 61 8 8720.2776928125 8720.2776928125 7294 gi|16767058|ref|NP_462673.1| putative inner membrane protein [Salmonella typhimurium LT2] 11089.657293515625 22 96 A.DSPFSSLQSAHEKNTILKD(LRKMCTPKGALTDEAWEKKIMASEGNQQHIREAMIAIERNNQHNYWQALGKVECPE)[15.03].M 1 17.0 12.0 2.854571643226833E-4 1.4723671571444688 0.043785310734463276
/home/xiaowen/c_project/proteomics_cpp/testcases/data/st_no_digestion.msalign 784 1201 1607 20 9 8720.287750796875 8720.287750796875 7294 gi|16767058|ref|NP_462673.1| putative inner membrane protein [Salmonella typhimurium LT2] 11089.657293515625 22 96 A.DSPFSSLQSAHEKNTILKD(LRKMCTPKGALTDEAWEKKIMASEGNQQHIREAMIAIERNNQHNYWQALGKVECPE)[15.04].M 1 11.0 9.0 2.951351384934633E-4 1.5017135488426026 0.04446012702893437
/home/xiaowen/c_project/proteomics_cpp/testcases/data/st_no_digestion.msalign 1470 2026 2707 40 21 15479.12499542578 15478.957624631354 266 gi|16763526|ref|NP_459141.1| preprotein translocase [Salmonella typhimurium LT2] 101989.5971967749 534 668 Q.IAQIKADWQVRHDAVLAAGGLHIIGTERHESRRIDNQLRGRSGRQGDPGSSRFYLSMEDALMRIFASDRVSGMMRKLGMKPGEAIEHPWVTKAIANAQRKVESRNFDIRKQLLEYDDVANDQRRAIYTQRNELLD.V 0 9.0 8.0 2.2586859410604209E-4 1.5683585398927224 0.04442877291960508
/home/xiaowen/c_project/proteomics_cpp/testcases/data/st_no_digestion.msalign 1524 2113 2823 63 20 15617.1250903125 15617.06384487671 6420 gi|16766620|ref|NP_462235.1| putative cytoplasmic protein [Salmonella typhimurium LT2] 24710.583868222657 78 210 G.YVYDMITDFNGAPSITLTEFAAQCRYEEDVAVLRRLLKKLKRYLLDNHIVTMSLKPQNILCQRISESEVVPVVCDNLGESTFIPLATWSTWCCERKLERVWQRFIAQPALAVALERDAQPKDKKRLALTSHEA. 0 5.0 5.0 0.04547850896597895 1.6372263227752422 0.04580690627202255
/home/xiaowen/c_project/proteomics_cpp/testcases/data/st_no_digestion.msalign 582 990 1326 101 11 9850.820320484376 9850.76289959473 3016 gi|16764904|ref|NP_460519.1| putative alpha amylase [Salmonella typhimurium LT2] 65790.15470333619 48 137 G.DGWFTLDVAGVTPGTEYNFVLSDGMVVPDPASRAQKTDVNGPSYVVDPGSYTWRNTGWKGSRWEQAVVYEMHTGTFTPEGTFRAAIAKLP.Y 0 11.0 10.0 2.9771202081611554E-4 1.6526240943959967 0.045774647887323945
/home/xiaowen/c_project/proteomics_cpp/testcases/data/st_no_digestion.msalign 505 912 1222 72 12 7709.896470484375 7709.865602689207 2512 gi|16764650|ref|NP_460265.1| NADP-specific glutamate dehydrogenase [Salmonella typhimurium LT2] 48885.46839733642 377 447 G.VATSGLEMAQNAARLSWKAEKVDARLHHIMLDIHHACVEYGGDNKHTNYVQGANIAGFVKVADAMLAQGVI. 0 4.0 4.0 0.04094514406824665 1.6787509067981126 0.04574243490499648
/home/xiaowen/c_project/proteomics_cpp/testcases/data/st_no_digestion.msalign 1595 2209 2951 71 16 11546.277819374998 11546.186987119145 1100 gi|16763948|ref|NP_459563.1| putative inner membrane protein [Salmonella typhimurium LT2] 102595.46957989258 2 102 M.NKESIFRQLELRLAGCSLTADALGAFSAMAIADSLRQKRSIISHHLNNLHREQRVVKVNSRPVLFLPVEALRRHHRLAVRQGDYASIQALCAERQDSLELL.I 0 4.0 4.0 0.021409784420973084 1.777012106940766 0.04781997187060478
/home/xiaowen/c_project/proteomics_cpp/testcases/data/st_no_digestion.msalign 1925 2849 3804 12 10 9989.00152467969 9988.868726926266 7760 gi|16767294|ref|NP_462909.1| putative acetyltransferase [Salmonella typhimurium LT2] 37007.82546062988 14 98 E.STAMYHLRVPQTEEELERYYQFRWEMLRKPLHQPKGSERDGWDALAHHQMVVDEEGNLVAVGRLYINADNEASIRFMAVHPSVQD.K 0 4.0 4.0 3.183942235159348E-4 1.8008384970735252 0.04848910751932537
/home/xiaowen/c_project/proteomics_cpp/testcases/data/st_no_digestion.msalign 1375 1907 2548 86 26 17485.506701093753 17485.556772427983 8142 gi|16767484|ref|NP_463099.1| p-hydroxybenzoate/octaprenyltransferase [Salmonella typhimurium LT2] 32751.379053311768 2 157 M.EWSLTQSKLLAFHRLMRTDKPIGALLLLWPTLWALWVATPGMPQLWILAVFVAGVWLMRAAGCVVNDYADRKFDGHVKRTVNRPLPSGAVTEKEARNLFVVLVLLAFLLVLTLNAMTILLSVAALALAWVYPFMKRYTHLPQVVLGAAFGWSIPMA.F 0 4.0 4.0 0.02514064614595109 1.8352671686544295 0.04985955056179775
/home/xiaowen/c_project/proteomics_cpp/testcases/data/st_no_digestion.msalign 525 932 1248 103 7 6394.600897863281 6394.544172482914 7756 gi|16767292|ref|NP_462907.1| tRNA processing exoribonuclease BN [Salmonella typhimurium LT2] 32746.631536679688 1 56 .(M)[42.01]LKTVHQKAGRHTRPVRAWLKLLWQRIDEDNMTTLAGNLAYVSLLSLVPLIAVVFA.L 0 7.0 6.0 0.04969539725448626 1.8387296984159915 0.04982456140350877
/home/xiaowen/c_project/proteomics_cpp/testcases/data/st_no_digestion.msalign 503 910 1219 106 11 7709.880736230468 7709.806993680416 8410 gi|16767618|ref|NP_463233.1| putative potassium channels [Salmonella typhimurium LT2] 40487.64872570556 247 318 N.LSAEQLSRSIQDPGSSQSVASIMNPMLGDTGFALPVPASVAPMRYGALMRYMKLHHDATVLGISHCKNGRGM.E 0 12.0 9.0 3.9313316178283734E-4 1.8469315502464623 0.05119214586255259
/home/xiaowen/c_project/proteomics_cpp/testcases/data/st_no_digestion.msalign 270 670 899 75 7 4506.4671082187515 4506.471807675778 6930 gi|16766875|ref|NP_462490.1| low-affinity phosphate transporter [Salmonella typhimurium LT2] 53568.62865276855 2 43 M.LHLFAGLDLHTGLLLLLALAFVLFYEAINGFHDTANAVATVI.Y 0 4.0 4.0 0.02911311146013855 1.8632391334488672 0.05185704274702172
/home/xiaowen/c_project/proteomics_cpp/testcases/data/st_no_digestion.msalign 386 792 1062 109 15 9043.943007406251 9043.826910214839 7474 gi|16767149|ref|NP_462764.1| F1-F0-type proton-ATPase subunit beta [Salmonella typhimurium LT2] 50308.82936306518 1 85 .MATGKIVQVIGAVVDVEFPQDAVPRVYDALEVQNGNEKLVLEVQQQLGGGIVRTIAMGSSDGLRRGLDVKDLEHPIEVPVGKATL.G 0 8.0 7.0 0.01945066014004886 1.8672633734446904 0.05182072829131653
/home/xiaowen/c_project/proteomics_cpp/testcases/data/st_no_digestion.msalign 820 1238 1656 36 7 6068.330193910156 6068.330193910156 86 gi|16763433|ref|NP_459048.1| 30S ribosomal subunit protein S20 [Salmonella typhimurium LT2] 9649.330160336915 2 55 M.ANIKSAKKRAVQSEKARKHNASRRSMMRTFIKKVYAAIEAGDKAAALKA(FNEMQ)[20.06].P 1 6.0 6.0 0.04074556969030557 1.870608496696016 0.05178446466060182
/home/xiaowen/c_project/proteomics_cpp/testcases/data/st_no_digestion.msalign 871 1291 1727 128 17 8948.89759061719 8948.801199155268 840 gi|39546296|ref|NP_459431.2| putative transport protein [Salmonella typhimurium LT2] 48739.14178295654 373 454 L.AGAVLAMVWLAVASTMKEPPYVSSLRVEIPADIVADDRLKQRLLAMKGVSEALIVAEEHSAYVKIDSKVTNRFEVEQLISKG. 0 7.0 5.0 0.08506151244102708 1.8713532737025957 0.05174825174825175
/home/xiaowen/c_project/proteomics_cpp/testcases/data/st_no_digestion.msalign 1996 3155 4212 56 18 13355.740122492187 13355.90869732422 3778 gi|16765294|ref|NP_460909.1| sigma 28 [Salmonella typhimurium LT2] 27456.151739316407 2 119 M.NSLYTAEGVMDKHSLWQRYVPLVRHEALRLQVRLPASVELDDLLQAGGIGLLNAVDRYDALQGTAFTTYAVQRIRGAMLDELRSRDWVPRSVRRNAREVAQAMGQLEQELGRNATETE.V 0 4.0 4.0 0.015305949876845158 1.9438556343593352 0.053109713487071976
/home/xiaowen/c_project/proteomics_cpp/testcases/data/st_no_digestion.msalign 1174 1654 2211 145 20 12217.854757546875 12217.72862835449 2848 gi|16764819|ref|NP_460434.1| outer membrane protein N precursor [Salmonella typhimurium LT2] 41695.435972409665 272 377 G.NDDCRSCVANKTQNFEVTAQYQFDFGLRPAVSFLMSKGKDLTYNNVNGDDKDLVKYADVGATYYFNKNFSTYVDYKINLLDDDDQFYKDAGISTDDIVALGMVYQF. 0 4.0 4.0 0.1333769966756058 2.000654950134087 0.05307262569832402
/home/xiaowen/c_project/proteomics_cpp/testcases/data/st_no_digestion.msalign 315 715 959 89 15 8518.673023839843 8518.619611936036 3360 gi|16765079|ref|NP_460694.1| putative septation protein [Salmonella typhimurium LT2] 20806.436227994385 1 73 .MKQFLDFLPLVVFFAFYKLYDIYAATSALIVATAIVLIYSWVRYRKIEKMALITFVLVAVFGGLTLFFHNDEF.I 0 4.0 4.0 0.03972980743773772 2.1851394090755747 0.055826936496859735
/home/xiaowen/c_project/proteomics_cpp/testcases/data/st_no_digestion.msalign 156 543 730 70 8 5240.6110928125 5240.606863217774 4700 gi|16765755|ref|NP_461370.1| pyridoxal-pyridoxamine kinase/hydroxymethylpyrimidine kinase [Salmonella typhimurium LT2] 31233.06537838501 59 105 L.FSNTPHYKTFYGGIIPAEWFAGYLTALNERDALRELKAITTGYMGSA.D 0 5.0 5.0 6.641577909208883E-4 2.3524900253857868 0.056485355648535567
/home/xiaowen/c_project/proteomics_cpp/testcases/data/st_no_digestion.msalign 454 861 1154 86 14 7824.973581289062 7824.929563718263 828 gi|16763810|ref|NP_459425.1| 2-aminoethylphosphonate transport protein [Salmonella typhimurium LT2] 27749.213274198 173 239 H.YNLVYTSMHLSFYPTAMPAQAAQALGVMEGRPALLLRRLNYDQHGRVLDLDIEYWRHDSLRIEVDTH. 0 4.0 4.0 0.05817072586985238 2.4431704865337998 0.05853658536585366
/home/xiaowen/c_project/proteomics_cpp/testcases/data/st_no_digestion.msalign 571 978 1310 49 6 4958.548331234375 4958.56438274902 5730 gi|16766275|ref|NP_461890.1| putative serine transport protein [Salmonella typhimurium LT2] 46942.99149151367 244 287 A.EKKCSKILAFAHIMMVLTVMFFVFSCVLSLTPADLAAAKEQNIS.I 0 5.0 5.0 7.339322459949907E-4 2.449361611978724 0.0584958217270195
/home/xiaowen/c_project/proteomics_cpp/testcases/data/st_no_digestion.msalign 1431 1977 2642 35 26 19647.180766835943 19647.2003042273 2640 gi|16764715|ref|NP_460330.1| putative oxidase [Salmonella typhimurium LT2] 114144.6244146399 578 744 E.CNGNGLCFNFDAKSPMCPSMKISLNRIHSPKGRATLVREWLRLLADRGVDPLKLEKELPEKRASLRTLIARTRNSWHKRKGEYDFSHEVKEAMSGCLACKACTTQCPIKIDVPEFRSRFLQLYHTRYLRPVRDHLVATVETYAPLMARAPKTFNFFINQPVVRNLAK.K 0 5.0 5.0 3.329293246488602E-4 2.457169279262005 0.05845511482254697
/home/xiaowen/c_project/proteomics_cpp/testcases/data/st_no_digestion.msalign 1512 2101 2807 45 20 15617.129973125 15617.129973125 132 gi|16763457|ref|NP_459072.1| carbamoyl-phosphate synthase large subunit [Salmonella typhimurium LT2] 118862.74195690674 340 1075 I.TGGRTPASFEPSIDYVVTKIPRFNFEKFAGANDRLTTQMKSVGEVMAIGRTQQESLQKALRGLEVGATGFDPKVSLDDPEALTKIRRELK(DAGADRIWYIADAFRAGLSVDGVFNLTNIDRWFLVQIEELVRLEEKVAEVGITGLNADFLRQLKRKGFADARLAKLAGVREAEIRKLRDQYDLHPVYKRVDTCAAEFATDTAYMYSTYEDECEANPSIDRDKIMVLGGGPNRIGQGIEFDYCCVHASLALREDGYETIMVNCNPETVSTDYDTSDRLYFEPVTLEDVLEIVRIEKPKGVIVQYGGQTPLKLARALEAAGVPVIGTSPDAIDRAEDRERFQHAVDRLKLKQPANATVTAIEQAVEKAKEIGYPLVVRPSYVLGGRAMEIVYDEADLRRYFQTAVSVSNDAPVLLDRFLDDAVEVDVDAICDGEMVLIGGIMEHIEQAGVHSGDSACSLPAYTLSQEIQDVMRQQVQKLAFELQVRGLMNVQFAVKDNEVYLIEVNPRAARTVPFVSKATGVPLAKVAARVMAGKSLTEQGVTQEIIPPYYSVKEVVLPFNKFPGVDPLLGPEMRSTGEVMGVGRTFAEAFAKAQLGSNSTMKKQGRALLSVREGDKERVVDLAAKLLKQGFELDATHGTAIVLGEAGINPRLVNKVHEGRPHIQDRIKNGEYTYIINTTAGRRAIEDSRVIRRSALQYKVHYDTTL)[-66009.90]NGGFATTMALNADATEKVTSVQEMHAQIKKS. 1 14.0 11.0 2.0326077217227155E-4 2.4601241192476446 0.0584144645340751
/home/xiaowen/c_project/proteomics_cpp/testcases/data/st_no_digestion.msalign 1684 2316 3094 85 18 17714.62526989844 17714.889677243653 7710 gi|16767268|ref|NP_462883.1| putative cytoplasmic protein [Salmonella typhimurium LT2] 19201.697485166016 15 171 G.KQRRKTREELNQEARDRKRLKKHRGHAPGSRAAGGNSASGGGNQNQQKDPRIGSKTPVPLGVTEKVTQQHKPKSEKPMLSPQAELDLLETDERLDALLERLEAGETLSAEDQAWVDAKLDRIDELMQKLGLSYDDDEEDDEEDEKQEDMMRLLRGGN. 0 4.0 4.0 0.08024851184517014 2.6482008908906147 0.06323835997220292
/home/xiaowen/c_project/proteomics_cpp/testcases/data/st_no_digestion.msalign 362 764 1024 67 17 9043.945667320311 9043.848837094733 3296 gi|16765047|ref|NP_460662.1| putative diguanylate cyclase/phosphodiesterase [Salmonella typhimurium LT2] 75088.02853985352 582 660 Q.AFVRDIHKQPLSQSLVRAIVAVAQALNLQVIAEGVENAKEDAFLTKNGVNERQGFLFAKPMPAVSFERWYKRYQTKKMR. 0 4.0 4.0 0.10242824252521857 2.663134305655683 0.06319444444444444
/home/xiaowen/c_project/proteomics_cpp/testcases/data/st_no_digestion.msalign 389 795 1066 92 10 7881.955297007812 7881.87919064087 4878 gi|16765846|ref|NP_461461.1| nucleoside diphosphate kinase [Salmonella typhimurium LT2] 15568.856470303956 71 143 G.PIVVSVLESENAVQRHRDLLGATNPANALAGTLRADYADSLTENGTHGSDSLESAQREIAFFFGEGEVCPRTR. 0 6.0 5.0 0.08460254846159052 2.7072815507708965 0.06315058986814712
/home/xiaowen/c_project/proteomics_cpp/testcases/data/st_no_digestion.msalign 1507 2090 2792 13 12 9314.993822140626 9314.997137265625 1988 gi|16764388|ref|NP_460003.1| lysozyme [Phage Gifsy-2] 16407.42389126343 65 149 N.TGLVGYENDVSRLVKVKLTQGQFDALVSFAYNLGARTLSSSTLLRKLNAGDYAGAADEFLRWNKAGGKVLNGLTRRREAERALFL.S 0 5.0 4.0 5.1751719581825E-4 2.788782559931703 0.0638002773925104
/home/xiaowen/c_project/proteomics_cpp/testcases/data/st_no_digestion.msalign 1164 1642 2195 11 11 10929.697908925784 10929.697908925784 3624 gi|16765215|ref|NP_460830.1| putative exported protein [Salmonella typhimurium LT2] 12834.850965695801 20 117 A.APQVITVSRFEVGKDKWAFNREEVMLTCRPGQALYVINPSTLVQYPLNAIAEQQVAEGK(TRAQPIAVIQIDNPAKPGEKMSLAPFIERAQKLCDPSNS)[-.96]. 1 4.0 4.0 0.11195829025886489 2.8688505417849743 0.06514206514206514
/home/xiaowen/c_project/proteomics_cpp/testcases/data/st_no_digestion.msalign 1836 2620 3499 30 10 12175.534931421877 12175.454946713873 4888 gi|16765851|ref|NP_461466.1| penicillin-binding protein 1c [Salmonella typhimurium LT2] 85279.63439007325 156 265 D.ILTLYLNRAPFGGTLQGIGAASWAYFGKPPARLSYADAALLAVLPQAPSRLRPDRWPARAEAARNKVLDRMAAQGVWPAETVRESREEPVWLAPRQMPQLAPLFARMMLS.K 0 10.0 6.0 4.63043449426236E-4 2.8941435301554477 0.06578947368421052
/home/xiaowen/c_project/proteomics_cpp/testcases/data/st_no_digestion.msalign 980 1410 1886 44 20 14442.72839765625 14442.739038663327 7854 gi|16767340|ref|NP_462955.1| putative ABC-type aldose transport system ATPase component [Salmonella typhimurium LT2] 55938.046255307614 131 261 C.QLDPASAAGTLDVADRQIVEIMRGLMRDSRILILDEPTASLTPAETDRLFTRLQELLKKGVGIVFISHKLPEIRQLAHCVSVMRDGKIALFGKTHDLSTDEIIQAITPATQGVSLSANQKLWLELPGSRPQ.N 0 5.0 5.0 4.3085019871172804E-4 2.924839987056301 0.06643598615916955
/home/xiaowen/c_project/proteomics_cpp/testcases/data/st_no_digestion.msalign 504 911 1220 121 13 7709.886936183593 7709.913183408204 7202 gi|16767011|ref|NP_462626.1| formamidopyrimidine DNA glycosylase [Salmonella typhimurium LT2] 30555.94174786133 203 269 I.KAVLLRSIEQGGTTLKDFLQSDGKPGYFAQELQVYGRKGEPCRVCGTPIVATKHAQRATFYCRHCQK. 0 6.0 5.0 0.06680613757832354 3.0062761910245595 0.06639004149377593
/home/xiaowen/c_project/proteomics_cpp/testcases/data/st_no_digestion.msalign 800 1217 1628 62 13 9714.282170878909 9714.147031979981 4784 gi|16765797|ref|NP_461412.1| putative pyrophosphohydrolase [Salmonella typhimurium LT2] 21910.141279416504 1 83 .(M)[42.01]SQTITLIKDKILSDNYFTLRNITYDLTRRNGEVIRHKREVYDRGNGATILLYNSTKKTVVLVRQFRVATWVNGNQDGMLIET.C 0 4.0 4.0 0.03504602015031908 3.013957732927441 0.0663441603317208
/home/xiaowen/c_project/proteomics_cpp/testcases/data/st_no_digestion.msalign 483 890 1192 50 14 7977.932702140624 7977.955351071774 7950 gi|16767388|ref|NP_463003.1| argininosuccinate lyase [Salmonella typhimurium LT2] 50849.03147335571 274 345 V.TSGSSLMPQKKNPDALELIRGKCGRVQGALTGMMMTLKGLPLAYNKDMQEDKEGLFDALDTWLDCLHMAALV.L 0 6.0 5.0 6.413501512051924E-4 3.076299771105161 0.06698895027624309
/home/xiaowen/c_project/proteomics_cpp/testcases/data/st_no_digestion.msalign 290 690 926 69 7 4538.440489890625 4538.465489890625 3256 gi|16765027|ref|NP_460642.1| putative inner membrane protein [Salmonella typhimurium LT2] 39372.580057340085 2 135 M.SEPL(KPRIDFAEPLKEEPTSAFKAQQTFSEAESRTFAPAAIDERPEDEGAAEAAVDAALRPKRSLWRKMVMGGLALFGASVVGQGVQWTMNAWQTQDW)[-10115.99]VALGGCAAGALIVGAGVGSVVTEWRRLWRLRQRAHE.R 1 8.0 8.0 7.091708124203467E-4 3.0813174884720738 0.06694271911663216
/home/xiaowen/c_project/proteomics_cpp/testcases/data/st_no_digestion.msalign 1693 2334 3118 20 14 11253.867143406249 11253.913809018552 7116 gi|16766968|ref|NP_462583.1| selenocysteine synthase [Salmonella typhimurium LT2] 51111.632959561764 76 183 A.AQSALRPVINLTGTVLHTNLGRALQAQEAIEAVTQAMRAPVTLEYDLDGAGRGHRDRALATLLCRITGAEDACIVNNNAAAVLLMLAATASGKEVVVSRGELVEIGGA.F 0 4.0 4.0 5.14277210544807E-4 3.1006989237995457 0.06689655172413793
/home/xiaowen/c_project/proteomics_cpp/testcases/data/st_no_digestion.msalign 768 1185 1586 90 17 12995.4777243125 12995.487997250983 2898 gi|16764844|ref|NP_460459.1| putative dimethyl sulphoxide reductase chain A1 [Salmonella typhimurium LT2] 90761.74472637696 1 116 .(M)[42.01]MPGEKQQTGVSRRTLVKSAALGSLALAAGGVSLPFGMRTAAAAVQQAMRNEEDKIVWGACSVNCGSRCALRLHVKDNEVWWVETDNTGDDVYGNHQVRACLRGRSIRRRINHPDR.L 0 5.0 5.0 0.028140974104916942 3.1517890997506974 0.06753962784286699
/home/xiaowen/c_project/proteomics_cpp/testcases/data/st_no_digestion.msalign 583 991 1327 164 10 9849.823079882815 9849.909578519288 3046 gi|16764919|ref|NP_460534.1| putative transcriptional regulator [Salmonella typhimurium LT2] 21589.007974820557 107 192 I.LADRDPHIRDAYLLTMQMWHEETVTIIEQGKQAGEFTFTANATDIAWRLIALVCGLDGMYVLGIPEMADPAFKFHLDRMITLELFA. 0 9.0 7.0 0.1020216693385887 3.1626717494962495 0.0674931129476584
/home/xiaowen/c_project/proteomics_cpp/testcases/data/st_no_digestion.msalign 1688 2320 3099 79 26 17716.542281625007 17716.364401059567 4206 gi|16765509|ref|NP_461124.1| putative sugar transporter [Salmonella typhimurium LT2] 48683.99262447876 283 452 N.HRGIDLQQASWVTAAFQVGGTLGALLLGVLMDRLNPFRVLAVSYALGAVCIVMIGLSENGLWLMALAIFGTGIGISGSQVGLNALTATLYPTQSRATGVSWSNAIGRCGAIVGSLSGGMMMALNFSFDTLFFVIAIPAAISAVMLTLLTVVVRLSISVPDDLPRASVVNE. 0 4.0 4.0 0.08241330355158821 3.3789454456151167 0.07019958706125258
/home/xiaowen/c_project/proteomics_cpp/testcases/data/st_no_digestion.msalign 1522 2111 2820 59 16 15617.092670875 15617.111921506345 458 gi|16763622|ref|NP_459237.1| acetylCoA carboxylase alpha subunit [Salmonella typhimurium LT2] 35435.30261059326 175 319 E.RGQSEAIARNLREMSRLNVPVICTVIGEGGSGGALAIGVGDKVNMLQYSTYSVISPEGCASILWKSADKAPLAAEAMGIIAPRLKELKLIDSIIPEPLGGAHRNPEAMAASLKAQLLEDLADLDVLSTDDLKNRRYQRLMSYGYA. 0 5.0 4.0 0.09388624893165652 3.379904961539635 0.07015130674002751
/home/xiaowen/c_project/proteomics_cpp/testcases/data/st_no_digestion.msalign 635 1044 1398 135 18 11526.334669507814 11526.245409207762 6610 gi|16766714|ref|NP_462329.1| 50S ribosomal subunit protein L6 [Salmonella typhimurium LT2] 18905.156564908448 72 177 L.LNSMVIGVTEGFTKKLQLVGVGYRAAVKGNVVNLSLGFSHPVDHQLPAGITAECPTQTEIVLKGADKQVIGQVAADLRAYRRPEPYKGKGVRYADEVVRTKEAKKK. 0 4.0 4.0 0.18147648364944308 3.4480531893394186 0.07216494845360824
/home/xiaowen/c_project/proteomics_cpp/testcases/data/st_no_digestion.msalign 1114 1574 2104 18 10 10088.130522 10088.070020871579 7946 gi|16767386|ref|NP_463001.1| N-acetyl-gamma-glutamylphosphate reductase [Salmonella typhimurium LT2] 36268.6537000708 86 175 S.HDLAPQFLQAGCVVFDLSGAFRVNDRAFYEKYYGFTHQYPELLEQAVYGLAEWNVDKLNTANLIAVPGCYPTAAQLSLKPLIDGGLLDLT.Q 0 8.0 5.0 6.15396969401398E-4 3.4679501323535784 0.07211538461538461
/home/xiaowen/c_project/proteomics_cpp/testcases/data/st_no_digestion.msalign 1374 1906 2547 80 23 17504.538363753913 17504.34740276855 3476 gi|16765139|ref|NP_460754.1| putative inner membrane protein [Salmonella typhimurium LT2] 27650.717657285157 2 156 M.(S)[42.01]GYNEQFLKKNPLAILGVLRDLNKNQVPLRISWAHGQFISKILAVDPEKLIVDYGSQEYENSAVLRAGQVAIIAETQGAKVEFTLPQLVTGEYQRLPAFITPLPSSLWFVQRREYFRIGAPLYPPYYGVTTLPDTRTLRFRLFDLSLGGMGALLE.S 0 4.0 4.0 0.039051195842524936 3.4755564299847195 0.0720658888126287
/home/xiaowen/c_project/proteomics_cpp/testcases/data/st_no_digestion.msalign 269 669 898 75 7 4506.4671082187515 4506.449835019532 1494 gi|16764145|ref|NP_459760.1| molybdate transporter [Salmonella typhimurium LT2] 27503.34425945801 110 151 L.VVVAPKASEQKPFTIDNKTDWIRLLNGGRLAVGDPQHVPAGI.Y 0 7.0 6.0 0.001175959848631255 3.6988524572709265 0.0747599451303155
/home/xiaowen/c_project/proteomics_cpp/testcases/data/st_no_digestion.msalign 502 909 1218 66 12 7709.884751734375 7709.84344311279 7776 gi|16767301|ref|NP_462916.1| formate dehydrogenase-O beta subunit [Salmonella typhimurium LT2] 33946.148679929196 233 300 D.KPNLYHGLPENPEISETVKFWKGVWKPLAAFGFAATFAASVFHYVGVGPNRAEEEDDNLHEEKDEVRK. 0 4.0 4.0 0.09392823832774282 3.7571295331097128 0.07470870459218643
/home/xiaowen/c_project/proteomics_cpp/testcases/data/st_no_digestion.msalign 849 1269 1698 27 13 8948.887021765626 8948.798979001464 6640 gi|16766729|ref|NP_462344.1| 50S ribosomal subunit protein L3 [Salmonella typhimurium LT2] 22290.807253079834 4 86 G.LVGKKVGMTRIFTEDGVSIPVTVIEVEANRVTQVKDLANDGYRAVQVTTGAKKANRVTKPEAGHFAKAGVEAGRGLWEFRLAE.G 0 6.0 4.0 7.219948560130288E-4 3.793106305616236 0.07465753424657534
/home/xiaowen/c_project/proteomics_cpp/testcases/data/st_no_digestion.msalign 273 673 903 75 8 4506.4652033125 4506.455923276368 8138 gi|16767482|ref|NP_463097.1| periplasmic protein precursor [Salmonella typhimurium LT2] 31860.70844479126 146 186 V.MRLTPALGQQKLYVLVFTTEKDLQQTTTLLDPAKAYAKGVG.N 0 6.0 6.0 0.001217159397138822 3.8284375739483085 0.07529089664613278
/home/xiaowen/c_project/proteomics_cpp/testcases/data/st_no_digestion.msalign 1153 1626 2174 176 21 12761.060921964843 12760.872671323237 1290 gi|16764043|ref|NP_459658.1| apolipoprotein N-acyltransferase [Salmonella typhimurium LT2] 57732.550928311764 1 117 .MAFASLIERQRIRLLLALLFGACGTLAFSPYDVWPAAIVSLIGLQALTFNRRPLQSAAIGYCWGLGLFGSGINWVYVSIAQFGGMPGPVNVFLVVLLAAYLSLYTGLFAGILSRLWP.K 0 6.0 6.0 0.06284771384026859 3.833710544256384 0.07523939808481532
/home/xiaowen/c_project/proteomics_cpp/testcases/data/st_no_digestion.msalign 727 1142 1528 56 16 9517.3326110625 9517.248327451169 856 gi|16763825|ref|NP_459440.1| muropeptide transporter [Salmonella typhimurium LT2] 53796.69495220703 199 287 T.DTIPSPKSLEQAVVAPLRDFFGRNNAWLILLLIVLYKLGDAFAMSLTTTFLIRGVGFDAGEVGVVNKTLGLLATIVGALYGGILMQRLS.L 0 5.0 5.0 7.153678817678075E-4 3.874998200839894 0.07518796992481203
/home/xiaowen/c_project/proteomics_cpp/testcases/data/st_no_digestion.msalign 95 475 639 184 14 11063.960647859374 11063.967825131842 374 gi|16763580|ref|NP_459195.1| penicillin-binding protein 1B [Salmonella typhimurium LT2] 93922.27541180176 1 94 .MAGNDREPIGRKGKPSRPVKQKVSRRRQHDDDYDDDYEDEEPMPRKGKGKGRKPRGKRGWLWLLLKLFIVFVVLFAIYGVYLDQKIRSRIDGKV.W 0 7.0 7.0 0.049478756583249225 3.9088217700766887 0.07513661202185792
/home/xiaowen/c_project/proteomics_cpp/testcases/data/st_no_digestion.msalign 993 1423 1903 169 15 14441.772956367186 14441.799364285886 768 gi|16763779|ref|NP_459394.1| branched-chain amino acid transporter [Salmonella typhimurium LT2] 46476.02149410766 309 439 Q.YIPLSYRTLVFILGGFSMVVSNLGLSHLIQISIPVLTAIYPPCIALVVLSFTRSWWHNSTRIIAPAMFISLLFGILDGIKASAFGDMLPAWSQRLPLAEQGLAWLMPTVVMVILAIIWDRAAGRQVTSSAH. 0 5.0 5.0 0.20458751613177664 4.091750322635533 0.07508532423208192
/home/xiaowen/c_project/proteomics_cpp/testcases/data/st_no_digestion.msalign 1530 2121 2834 83 13 9249.082686511721 9248.989763455807 2756 gi|16764773|ref|NP_460388.1| putative transport protein [Salmonella typhimurium LT2] 49649.63062496704 266 353 P.LGIVDVAGHQIALNFSSLMFVLPMSLAAAVTIRVGYRLGQGSTLDAQTAARTGLGVGICMAVVTAIFTVTLRKHIALLYNDNPEVVAL.A 0 6.0 6.0 7.676340281235596E-4 4.094170653134064 0.07503410641200546
/home/xiaowen/c_project/proteomics_cpp/testcases/data/st_no_digestion.msalign 769 1186 1587 68 17 12995.4777243125 12995.59712429566 2676 gi|16764733|ref|NP_460348.1| tetrathionate reductase complex subunit A [Salmonella typhimurium LT2] 111436.55753536744 1 116 .(M)[42.01]ANLTRRQWLKVGLAVGGMVTFGLSYRDVAKRAIDGLLNGTSGKVTRDRIFGNALIPEAQAQTHWQQNPQQTIAMTQCFGCWTQCGIRARVNADGKVIRIAGNPYHPLSQEHPIDS.S 0 5.0 5.0 0.0329670841903136 4.186819692169827 0.07498295841854125
/home/xiaowen/c_project/proteomics_cpp/testcases/data/st_no_digestion.msalign 1459 2015 2692 16 20 15477.128792421872 15477.330480771483 5612 gi|16766217|ref|NP_461832.1| putative permease [Salmonella typhimurium LT2] 43853.649309354245 244 385 L.MIPWSIASFVAIMLTGRYFNRLGPRPLIIVGCLLQAAGILLLTNVTPATSHRVLMMIFALMGAGGSLCSSTAQSGAFLTIARRDMPDASALWNLNRQISFFLGATLLTLLLNALQRVMSLEVAYRWTFIAAAGITLLPLIYA.V 0 4.0 4.0 5.986943149063978E-4 4.189665531369252 0.07493188010899182
/home/xiaowen/c_project/proteomics_cpp/testcases/data/st_no_digestion.msalign 1589 2203 2943 12 12 11545.316933140626 11545.193723874516 1238 gi|16764017|ref|NP_459632.1| cell elongation-specific transpeptidase [Salmonella typhimurium LT2] 70989.61105175538 58 158 N.RIKLVPIAPSRGIIYDRNGIPLALNRTIYQIEMMPEKVDNVQQTLDALRSVVDLNDDDIAAFKKERARSHRFTSIPVKTNLTEVQVARFAVNQYRFPGVEV.K 0 5.0 4.0 7.049747857155862E-4 4.292323320303706 0.07556160653505786
/home/xiaowen/c_project/proteomics_cpp/testcases/data/st_no_digestion.msalign 790 1207 1615 98 35 19595.97533222266 19595.693269925534 3154 gi|16764975|ref|NP_460590.1| secreted effector protein [Salmonella typhimurium LT2] 46503.92202587646 238 408 D.LAIFLLGANDYMTLHKDNVIMVVEQQIDDIEKIISGGVNNVLVMGIPDLSLTPYGKHSDEKRKLKDESIAHNALLKTNVEELKEKYPQHKICYYETADAFKVIMEAASNIGYDTENPYTHHGYVHVPGAKDPQLDICPQYVFNDLVHPTQEVHHCFAIMLESFIAHHYSTE. 0 4.0 4.0 0.11301879162844965 4.407732873509536 0.07687074829931972
/home/xiaowen/c_project/proteomics_cpp/testcases/data/st_no_digestion.msalign 226 624 838 47 4 2839.5046898125 2839.530378537602 2158 gi|16764472|ref|NP_460087.1| suppression of copper sensitivity protein [Salmonella typhimurium LT2] 69022.01381130738 38 62 S.IRLRADTSANGETRLLLDVKLENGW.K 0 4.0 4.0 0.0021360981078061814 4.5433071748406775 0.07681849082256968
/home/xiaowen/c_project/proteomics_cpp/testcases/data/st_no_digestion.msalign 237 635 852 64 11 6307.635282425781 6307.595739560551 1768 gi|16764280|ref|NP_459895.1| putative minor tail protein [Phage Fels-1] 113533.37662334961 694 749 Q.LLALQQRISDLSGKKLTADEKSVLAHKTELVQALTLLDLKQQELQRQSALNDLKKK.A 0 4.0 4.0 0.0011202161398284865 4.592235406826316 0.078125
/home/xiaowen/c_project/proteomics_cpp/testcases/data/st_no_digestion.msalign 572 979 1311 40 6 4958.548331234375 4958.490522580571 1354 gi|16764075|ref|NP_459690.1| high-affinity potassium transport system chain B [Salmonella typhimurium LT2] 72266.76664944214 490 537 D.FLAEATPEAKLALIRQYQAEGRLVAMTGDGTNDAPALAQADVAVAMNS.G 0 4.0 4.0 0.0014005258641997247 4.673993147287803 0.07942973523421588
/home/xiaowen/c_project/proteomics_cpp/testcases/data/st_no_digestion.msalign 1561 2154 2878 13 12 10770.601981843753 10770.465730863034 904 gi|16763848|ref|NP_459463.1| hypothetical protein STM0468 [Salmonella typhimurium LT2] 58085.554556088864 81 174 L.AMRRVSYSFRYVQEVLYLKNSIPVCSSLEKESHIPAFPPPMKITRDGYRAWFTAQNDLGIKRYMAALGSDSYIVMIDPASFIDVIPFGAWPIDV.A 0 5.0 4.0 8.247894605687428E-4 4.851014984643637 0.0814111261872456
/home/xiaowen/c_project/proteomics_cpp/testcases/data/st_no_digestion.msalign 1159 1632 2182 68 18 12859.993928812502 12859.901811795658 6498 gi|16766659|ref|NP_462274.1| putative inner membrane protein [Salmonella typhimurium LT2] 74339.38910885376 1 116 .(M)[42.01]GIFSIANQHIRFAVKLACAIVLALFIGFHFQLETPRWAVLTAAIVAAGPAFAAGGEPYSGAIRYRGMLRIIGTFIGCIAALIIIISMIRAPLLMILVCCVWAGFCTWISSLVRIE.N 0 5.0 4.0 0.060627164057624694 4.9108002886676 0.08135593220338982
/home/xiaowen/c_project/proteomics_cpp/testcases/data/st_no_digestion.msalign 2006 3166 4227 128 21 13355.682588925782 13355.768308835452 4886 gi|16765850|ref|NP_461465.1| putative anaerobic dimethylsulfoxide reductase [Salmonella typhimurium LT2] 89156.96390362305 1 120 .MGFYLTSRIMKNIKSQGNGEQPAISRRHFIQASSALIALPFVSSPATAQARAVTATENRPAEKVVQTCSTFDCGGKCDIRAHVSDGIVTRISTRPDNALDAQMPVMRACVRGRAYRKFVY.H 0 6.0 6.0 0.03734203654454235 5.003832896968675 0.08333333333333333
/home/xiaowen/c_project/proteomics_cpp/testcases/data/st_no_digestion.msalign 1664 2291 3060 13 10 12106.053751250003 12105.980978208005 2128 gi|16764457|ref|NP_460072.1| 4-hydroxyphenylacetate catabolism [Salmonella typhimurium LT2] 59349.18441601318 260 362 R.FDENDAILVMDKVLIPWENVLIYRDFDRCRRWTMEGGFARMYPLQACVRLAVKLDFITALLKKSLECTGTVEFRGVQADLGEVVAWRNMFWALSDSMCSEATP.W 0 5.0 4.0 8.405784693014194E-4 5.216065544276453 0.08598510494245092
/home/xiaowen/c_project/proteomics_cpp/testcases/data/st_no_digestion.msalign 1385 1922 2568 19 20 15457.092173328125 15457.146330075688 7990 gi|16767408|ref|NP_463023.1| RNA polymerase beta prime subunit [Salmonella typhimurium LT2] 155992.24630947632 1071 1213 G.GKDLRPALKIVDAQGNDVLIPGTDMPAQYFLPGKAIVQLEDGVQISSGDTLARIPQESGGTKDITGGLPRVADLFEARRPKEPAILAEIAGIVSFGKETKGKRRLVITPVDGSDPYEEMIPKWRQLNVFEGERVERGDVISDG.P 0 6.0 4.0 8.005385371398206E-4 5.56361406878128 0.08592692828146144
/home/xiaowen/c_project/proteomics_cpp/testcases/data/st_no_digestion.msalign 1450 2003 2676 20 16 15291.573233624998 15291.574300961918 7292 gi|16767057|ref|NP_462672.1| putative transcriptional regulator [Salmonella typhimurium LT2] 105971.99165554566 89 226 E.VRSVADVLPHEEHYAPDDPFTSLIGYDRSLRDAVEKGRAAVLYPHGLHVLLTGPSGVGKTFFAELMHRFACEQASGAIPPLVYFNCAEYAHNPELLSSHLFGHRQGAFTGANEHKTGLVEQADGGYLLLDEVHRLSYE.G 0 5.0 5.0 8.099930692834834E-4 5.622854130826932 0.0872210953346856
/home/xiaowen/c_project/proteomics_cpp/testcases/data/st_no_digestion.msalign 393 799 1071 59 11 7881.988670421874 7882.007505612797 8196 gi|16767511|ref|NP_463126.1| putative inner membrane protein [Salmonella typhimurium LT2] 594547.7961179785 2102 2174 T.DKAGNKTTQQLDFIIDTLLSEPTIVLDSTDDSGTKGDHLTNVNKPTFLLGNIDADARYVTVEVQHGGTKEVLT.A 0 6.0 6.0 0.001170173982752308 5.631937517658432 0.08783783783783784
/home/xiaowen/c_project/proteomics_cpp/testcases/data/st_no_digestion.msalign 803 1220 1632 23 8 10620.479264375 10620.35539455933 2972 gi|16764883|ref|NP_460498.1| putative hydrogenase-1 large subunit [Salmonella typhimurium LT2] 67217.92457027955 42 135 N.VITNAVSTGTMWRGLEVILKGRDPRDAWAFVERICGVCTGTHALTSIRAVENALGIAIPDNANCIRNMMQATLHVHDHLVHFYHLHALDWVDVV.A 0 4.0 4.0 9.843561235129846E-4 5.7579896668628585 0.08777852802160702
/home/xiaowen/c_project/proteomics_cpp/testcases/data/st_no_digestion.msalign 1860 2658 3550 15 9 12159.522318960937 12159.461012082522 3760 gi|16765284|ref|NP_460899.1| excinuclease ABC subunit C [Salmonella typhimurium LT2] 68390.84030361695 482 591 E.LDVPWDKHRPLLLGVAKGADRKAGLETLFFEPEGEGFSLPPDSPALHVIQHIRDESHDHAIGGHRKKRAKVKNTSTLETIEGVGPKRRQMLLKYMGGLQGLRNASVEEIA.K 0 6.0 4.0 9.277118273928275E-4 5.80192372475911 0.08771929824561403
/home/xiaowen/c_project/proteomics_cpp/testcases/data/st_no_digestion.msalign 1333 1843 2463 51 18 14918.076465820315 14917.935770230719 7464 gi|16767144|ref|NP_462759.1| putative dipeptide/oligopeptide/nickel ABC-type transport system periplasmic component [Salmonella typhimurium LT2] 67643.49490566773 134 263 S.LCPGIPLRRSEQHLVRQIFSGLTRINEEKGEVEADLAHHWRQIDPLRWRFYLRPAVLWHDGQELTIDAVIASLTRSAKLPLFSHLQTIQATGPLSLEITLAHPDNRLPLLLSHIDAMILPPDHTQRADFP.A 0 7.0 6.0 8.687952158836299E-4 5.978544760877339 0.08833445718138908
/home/xiaowen/c_project/proteomics_cpp/testcases/data/st_no_digestion.msalign 158 545 732 57 6 5240.611606726563 5240.606863217774 4700 gi|16765755|ref|NP_461370.1| pyridoxal-pyridoxamine kinase/hydroxymethylpyrimidine kinase [Salmonella typhimurium LT2] 31233.06537838501 59 105 L.FSNTPHYKTFYGGIIPAEWFAGYLTALNERDALRELKAITTGYMGSA.D 0 4.0 4.0 0.0017232365160045526 6.103815645466317 0.0889487870619946
/home/xiaowen/c_project/proteomics_cpp/testcases/data/st_no_digestion.msalign 458 865 1159 80 14 7825.963937734375 7825.860151486817 8280 gi|16767553|ref|NP_463168.1| response regulator [Salmonella typhimurium LT2] 27887.021524625245 1 68 .MINVLIVDDDAMVAELNRRYVAQISGFHCCGTASTLEKAKEFIFNSENHIDLILLDIYMQQENGLDLL.P 0 4.0 4.0 0.05938984051372515 6.235933253941141 0.08956228956228957
/home/xiaowen/c_project/proteomics_cpp/testcases/data/st_no_digestion.msalign 1163 1641 2194 36 11 10929.697908925784 10929.622908925783 8592 gi|16767714|ref|NP_463329.1| ornithine carbamoyltransferase 1 [Salmonella typhimurium LT2] 36945.519857602536 35 132 K.KNGKEEQKLVGKNIALIFEKDSTRTRCSFEVAAYDQGARVTYLGSSGSQIGHKESIKDTARVLGRMFDGIQYRGYGQEIVETLAEYSGV(PVWNGLTDE)[15.14].Y 1 11.0 8.0 0.001068066884940062 6.312875858388484 0.0901749663526245
/home/xiaowen/c_project/proteomics_cpp/testcases/data/st_no_digestion.msalign 976 1403 1876 41 22 16007.58115784375 16007.754930692143 7398 gi|16767111|ref|NP_462726.1| sensor kinase [Salmonella typhimurium LT2] 100724.38930721802 237 376 K.LNQLVKILSRRQQRIEDPTVRAQIADALETINQYTTLVTLFRKENAIRDQLQTLMANNLFQFTRFSTEVSQLVNAIEKRNEAGLARLTHASQRGQIGLVILGILALCSLSFILWRVVYRSVSRPLAQQTQALQRLLEGDI.D 0 5.0 5.0 8.942174487310907E-4 6.313848915115525 0.09011432414256892
/home/xiaowen/c_project/proteomics_cpp/testcases/data/st_no_digestion.msalign 433 840 1126 101 11 7825.921861925783 7825.972891049802 8784 gi|16767809|ref|NP_463424.1| thymidine phosphorylase [Salmonella typhimurium LT2] 47085.88679333252 356 430 D.TRALGMAVVSMGGGRRQASDTIDYSVGFTDMARLGDSIDGQRPLAVIHAKDEASWQEAAKAVKAAIILDDKAPAS.T 0 9.0 8.0 0.0013110858176059283 6.32273698327317 0.09005376344086022
/home/xiaowen/c_project/proteomics_cpp/testcases/data/st_no_digestion.msalign 1386 1923 2570 49 21 15458.080136585937 15457.944868283692 5252 gi|16766034|ref|NP_461649.1| capsid scaffold-like protein [Salmonella typhimurium LT2] 30595.470934110108 2 144 M.TVKAKRFRIGVEGATTDGREIQREWLVQMAASYNPTVYTALINLEHIKSYLPESTFNRYGRVTGLVAEEIQDGPLAGKMALYADIEPTDALVELVKKGQKLFTSMEVSTKFADTGKAYLVGLGATDDPASLGTEMLAFSASAA.H 0 4.0 4.0 0.04993279635166857 6.391397933013577 0.08999328408327736
/home/xiaowen/c_project/proteomics_cpp/testcases/data/st_no_digestion.msalign 1597 2211 2954 10 10 9189.661731453127 9189.65755291504 4428 gi|16765619|ref|NP_461234.1| putative transcriptional regulator [Salmonella typhimurium LT2] 29496.48537273926 56 135 I.SLDHQDNYCLWTKLVELSGHALSKMDLRELARPRLTQLMDETGLLCHLGIIDHENAYYILKVESSSTISVRSHEGKSLSL.Y 0 4.0 4.0 0.0012188331418975205 6.514548475123881 0.09060402684563758
/home/xiaowen/c_project/proteomics_cpp/testcases/data/st_no_digestion.msalign 397 803 1076 37 10 7880.964696421875 7880.878519254148 6946 gi|16766883|ref|NP_462498.1| glutathione oxidoreductase [Salmonella typhimurium LT2] 49003.813970761716 6 78 Y.DYIAIGGGSGGIASINRAAMYGQKCALIEAKELGGTCVNVGCVPKKVMWHAAQIREAIHLYGPDYGFDTTINQ.F 0 5.0 5.0 0.001370653205743153 6.597090971399336 0.09054325955734406
/home/xiaowen/c_project/proteomics_cpp/testcases/data/st_no_digestion.msalign 357 759 1018 47 14 9044.9351466875 9044.852682309569 4474 gi|16765642|ref|NP_461257.1| hypothetical protein STM2315 [Salmonella typhimurium LT2] 64714.14790936035 197 277 P.FAVKYELAPSPWNAQRTLLKVDVQARDMQTRDLPPANLVFLIDTSGSMQPAERLPLIRSALKLLVNDLRAQDNITIVTYAG.G 0 5.0 5.0 0.001260348219468612 6.598273715694191 0.09048257372654156
/home/xiaowen/c_project/proteomics_cpp/testcases/data/st_no_digestion.msalign 1274 1765 2359 13 14 14043.589746203124 14043.589746203124 1690 gi|16764245|ref|NP_459860.1| putative inner membrane protein [Salmonella typhimurium LT2] 48794.785722928464 318 447 A.VDVAALLPFSPNAATLGFVFCTFGTIFSMGILLLIHSPIMVLPGFVPLFFSGGPIGVLANRMGGYRSVIICTFLLGIIQTFGTVWAIPLTGLAKEGVGWTGIFDWATLWPAICELLKFIASTFHLGPY(SI)[-29.87]. 1 4.0 4.0 0.2284682451219182 6.6861984567922 0.09109176155391828
/home/xiaowen/c_project/proteomics_cpp/testcases/data/st_no_digestion.msalign 1536 2127 2842 31 7 10088.907721093748 10088.907721093748 2772 gi|16764781|ref|NP_460396.1| putative glutaredoxin protein [Salmonella typhimurium LT2] 13070.567018704834 27 115 K.(LPSCGFSAQAVQALSACGERFAYVDILQNPDIRAELPKYANW)[-12.02]PTFPQLWVDGELVG(GCDIVIEMYQRGELQQLIKETAAKYKTQEPDAE)[.97]. 2 11.0 10.0 0.002986254173756562 6.91356505810943 0.09370816599732262
/home/xiaowen/c_project/proteomics_cpp/testcases/data/st_no_digestion.msalign 1799 2537 3388 12 8 8794.4827589375 8794.494077878418 6322 gi|16766571|ref|NP_462186.1| putative lipid carrier protein [Salmonella typhimurium LT2] 19792.296442227784 60 136 S.IHVRDIDLKWYTTVENEKLIVSQQADADVSFSADASDLLMIAARKQDPDTLFFQRRLVIEGDTELGLYVKNLMDAIE.L 0 4.0 4.0 0.001361799708810918 7.005215155348474 0.09431438127090301
/home/xiaowen/c_project/proteomics_cpp/testcases/data/st_no_digestion.msalign 1953 3079 4111 12 11 12201.508124171878 12201.42598934692 400 gi|16763593|ref|NP_459208.1| putative chlorine transport protein [Salmonella typhimurium LT2] 50676.2064268164 350 467 S.SGAPGGIFAPMLALGTLLGTAFGMAAAVLFPQYHLEAGTFAIAGMGALMAASVRAPLTGIVLVLEMTDNYQLILPMIITCLGATLLAQFLGGKPLYSTILARTLAKQDAEQAEKNQNA.P 0 4.0 4.0 0.001165436583248871 7.348395980847183 0.09558823529411764
/home/xiaowen/c_project/proteomics_cpp/testcases/data/st_no_digestion.msalign 1732 2389 3191 25 16 11782.2123116875 11782.223505216061 612 gi|16763700|ref|NP_459315.1| putative hydrolase [Salmonella typhimurium LT2] 47414.72976131958 222 328 R.GIAMLTLDMPSVGFSSKWKLTQDSSLLHQHVLKALPNVPWVDHTRVAAFGFRFGANVAVRLAYLEAPRLKAVACLGPVVHALLSDPQRQSTVPEMYLDVLASRLGMH.D 0 4.0 4.0 0.0012004505918148532 7.392553965824452 0.09552438209752839
/home/xiaowen/c_project/proteomics_cpp/testcases/data/st_no_digestion.msalign 1892 2737 3655 57 16 12201.5598789375 12201.486036496586 4388 gi|16765599|ref|NP_461214.1| DNA gyrase subunit A [Salmonella typhimurium LT2] 97175.22016354126 660 775 A.LTEFSRPRSAGIIAVNLNDGDELIGVDLTSGSDEVMLFSAAGKVVRFKEDAVRAMGRTATGVRGIKLAGDDKVVSLIIPRGEGAILTVTQNGYGKRTAADEYPTKSRATQGVISIK.V 0 9.0 6.0 0.0012156366619953402 7.590476732610348 0.09612817089452604
/home/xiaowen/c_project/proteomics_cpp/testcases/data/st_no_digestion.msalign 494 901 1207 58 10 7977.9554584843745 7978.008501248784 7108 gi|16766964|ref|NP_462579.1| putative cytoplasmic protein [Salmonella typhimurium LT2] 74870.05223675293 148 216 V.AFFQATGKRRLLDVVCRLADHIDSTFGPGENQLHGYPGHPEIELALMRLYEVTEQPRYMTLASYFIGQR.G 0 6.0 6.0 0.0016184273300009282 7.878786902119172 0.09606404269513008
/home/xiaowen/c_project/proteomics_cpp/testcases/data/st_no_digestion.msalign 846 1265 1692 14 14 10076.506822507814 10076.437471585692 1700 gi|16764250|ref|NP_459865.1| arginine transport system component [Salmonella typhimurium LT2] 26508.288938718262 10 101 S.AAGMTVGLAVCALIIGLALAMFFAVWESVKWRPIAWIGSALVTILRGLPEILVVLFIYFGSSQLLLTLSDGFTLHLGFTQIPVQMEIENFDV.S 0 4.0 4.0 0.001415295962211409 7.979109289056197 0.09666666666666666
/home/xiaowen/c_project/proteomics_cpp/testcases/data/st_no_digestion.msalign 1769 2470 3299 100 25 18696.97589433203 18696.75744076294 2310 gi|16764550|ref|NP_460165.1| 3-oxoacyl-[acyl-carrier-protein] reductase [Salmonella typhimurium LT2] 25586.172670560303 1 177 .MSFEGKIALVTGASRGIGRAIAETLVARGAKVIGTATSENGAKNISDYLGANGKGLMLNVTDPASIESVLENIRAEFGEVDILVNNAGITRDNLLMRMKDDEWNDIIETNLSSVFRLSKAVMRAMMKKRCGRIITIGSVVGTMGNAGQANYAAAKAGLIGFSKSLAREVASRGITVN.V 0 5.0 5.0 0.07240010536676755 8.108811801077966 0.09926715522984676
/home/xiaowen/c_project/proteomics_cpp/testcases/data/st_no_digestion.msalign 590 998 1336 50 16 8985.9166794375 8985.79895229858 4582 gi|16765696|ref|NP_461311.1| putative aspartate-semialdehyde dehydrogenase [Salmonella typhimurium LT2] 36379.40492077392 88 174 T.NAGCLVIDSSGLFALEPDVPLVVPEVNPYVLADYRNRNVIAVADSLTSQLLAALKPLIDQGGLSRIAVTSMLSASAQGKKAVDALAG.Q 0 5.0 5.0 0.0015926157797139966 8.355970465519928 0.09986684420772303
/home/xiaowen/c_project/proteomics_cpp/testcases/data/st_no_digestion.msalign 1366 1897 2535 35 21 17505.404234113288 17505.30851955932 4790 gi|16765800|ref|NP_461415.1| sensory histidine kinase [Salmonella typhimurium LT2] 63929.04719372314 332 485 P.LLNSVSTMLGRGLYFNQAQKHFQQLLLMEERATIARELHDSLAQVLSYLRIQLTLLKRAIPEDNAGAQSIMADFSRALNDAYRQLRELLTTFRLTLQQADLPSALHEMLEDLQSQTPAKLTLDCRLPTLALDAQMQVHLLQIVREAVLNAIKHA.N 0 5.0 4.0 0.0011582161062816826 8.377291451333459 0.0998003992015968
/home/xiaowen/c_project/proteomics_cpp/testcases/data/st_no_digestion.msalign 1021 1453 1943 129 14 8113.320960804688 8113.4038373999 3934 gi|16765373|ref|NP_460988.1| propanediol dehydratase reactivation protein [Salmonella typhimurium LT2] 64586.27412243408 2 78 M.RYIAGIDIGNSSTEVALARQDETGALTITHSALAETTGIKGTLRNVFGIQEALALVAKRAGINVRDISLIRINEATP.V 0 4.0 4.0 0.09265669193574817 8.61707235002458 0.09973404255319149
/home/xiaowen/c_project/proteomics_cpp/testcases/data/st_no_digestion.msalign 1568 2162 2888 17 12 10770.530204500003 10770.623274045407 2176 gi|16764482|ref|NP_460097.1| major sodium/proline symporter [Salmonella typhimurium LT2] 54567.64023800415 250 348 F.GQPHILARFMAADSHHSIVHARRISMTWMILCLAGAVAVGFFGIAYFNNNPALAGAVNQNSERVFIELAQILFNPWIAGVLLSAILAAVMSTLSCQLLV.C 0 6.0 4.0 0.0015524412631282016 9.130628727698355 0.10299003322259136
/home/xiaowen/c_project/proteomics_cpp/testcases/data/st_no_digestion.msalign 1665 2292 3062 17 11 12106.094693023439 12106.147352414557 2028 gi|16764408|ref|NP_460023.1| host specificity protein J [Phage Gifsy-2] 90287.34394283814 32 144 S.EGPIVGPVNGLQSVLINNTPVVDADGNSNIHGVTVVYQVGETPQAPLEGFEASGAETVLGVEVKHDNPVTRTVVSENVDRLRFTFGVQMLQETTDKGDRNPSSVNLLIQFQRS.G 0 4.0 4.0 0.0015048127359530892 9.430230999704806 0.10358565737051793
/home/xiaowen/c_project/proteomics_cpp/testcases/data/st_no_digestion.msalign 1912 2784 3718 24 10 12215.486111296876 12215.393522458493 3106 gi|16764950|ref|NP_460565.1| putative benzoate membrane transport protein [Salmonella typhimurium LT2] 40773.909116940915 176 290 V.MGITVALIQGKVAMSGIHFAPVWPTFVPPHFSFAQSLSVAVPLFLVTMASQNAPGVATMKASGYQLPVSPLMIFTGLLALLLSPFGVYSICIAAITAAICQSPDAHPDPTRRWLA.A 0 5.0 5.0 0.0015244741871352741 9.513836115976957 0.1041804910418049
/home/xiaowen/c_project/proteomics_cpp/testcases/data/st_no_digestion.msalign 758 1174 1571 113 20 10277.707709203123 10277.614855008544 4178 gi|16765494|ref|NP_461109.1| putative ABC-type proline/glycine betaine transport system permease component [Salmonella typhimurium LT2] 41623.97608776611 204 301 G.VWCYFSASRQGPVFTVLNVIQTIPSVALFGLLIAPLAGLVKQFPWLAAFGVAGTGMTPALIALVLYALLPLVRGVVAGLNQVPRDVLESARAMGMSSG.Q 0 8.0 6.0 0.0016862088450742743 9.657505345487248 0.10411140583554376
/home/xiaowen/c_project/proteomics_cpp/testcases/data/st_no_digestion.msalign 229 627 842 71 7 5124.548037277344 5124.569505887452 326 gi|16763556|ref|NP_459171.1| spermidine synthase/putrescine aminopropyltransferase [Salmonella typhimurium LT2] 32416.59283276123 82 128 V.LIIGGGDGAMLREVTRHKNVETITMVEIDAGVVSFCRQYLPNHNAGS.Y 0 4.0 4.0 0.002742776413766307 9.752933159688073 0.10470510271703115
/home/xiaowen/c_project/proteomics_cpp/testcases/data/st_no_digestion.msalign 1988 3146 4200 24 13 9044.934976398437 9044.874976398438 1314 gi|16764055|ref|NP_459670.1| N-acetylglucosamine-specific enzyme IIABC [Salmonella typhimurium LT2] 68730.95855160279 485 650 P.APAAKPQAVPNAVTIAELVSPITGEVVALDQVPDEAFASKAVGDGVAVKPTDKTVVSPAA(GTIVKIFNTNHAFCLETEKGAEIVVHMGIDTVALNGQGFKRLVEEGAEVTAGQPVLELDLDFLNANARSMISPVVCSNSDDF)[-8236.11]SALVIKADGHVVAGKTPLYEIKSK. 1 6.0 6.0 0.0032469071800089173 10.127544164300367 0.10529801324503311
/home/xiaowen/c_project/proteomics_cpp/testcases/data/st_no_digestion.msalign 507 914 1224 71 10 7709.890514671874 7709.916330533445 6334 gi|16766577|ref|NP_462192.1| tryptophan-specific transport protein [Salmonella typhimurium LT2] 44778.789446072995 2 73 M.ATLTTTQTSPSLLGGVVIIGGTIIGAGMFSLPVVMSGAWFFWSMAALVFTWFCMLHSGLMILEANLNYRIGS.S 0 4.0 4.0 0.07290529138277617 10.206740793588663 0.10522832561217736
/home/xiaowen/c_project/proteomics_cpp/testcases/data/st_no_digestion.msalign 1703 2348 3136 22 11 11232.8504001875 11232.691442685551 8486 gi|16767656|ref|NP_463271.1| putative periplasmic protein [Salmonella typhimurium LT2] 136366.22488995118 645 745 V.QGEPVSGQLSLTGSFDREAARWKGTLSDTRFQTPVGPWSLTRAIALDYRNKEQKISIGPHCWLNPNAELCIPQTIDAGAAGRAVVNLNRFDLAMLKPFMPD.T 0 4.0 4.0 0.0016986797127237668 10.250091481234605 0.10515873015873016
/home/xiaowen/c_project/proteomics_cpp/testcases/data/st_no_digestion.msalign 1406 1948 2603 92 57 34098.30868592579 34098.30225201172 2972 gi|16764883|ref|NP_460498.1| putative hydrogenase-1 large subunit [Salmonella typhimurium LT2] 67217.92457027955 2 306 M.AYPYQTQGFTLDNSGRRIVVDPVTRIEGHMRCEVNIDSNNVITNAVSTGTMWRGLEVILKGRDPRDAWAFVERICGVCTGTHALTSIRAVENALGIAIPDNANCIRNMMQATLHVHDHLVHFYHLHALDWVDVVAALKADPHQTSAIAQSLSAWPLSSPGYFRDLQNRLKRFIESGQLGPFRNGYWGHPAMKLPPEANLLAVAHYLEALDFQKEIVKIHTVFGGKNPHPNWLVGGVPCAINLDETGAVGAVNMERLNLVSSIIQKARQFCEQVYLPDVLLIASYYKDWAKIGGGLSSMNLLAYGE.F 0 4.0 4.0 0.09860432282084007 10.254849573367368 0.10508922670191673
/home/xiaowen/c_project/proteomics_cpp/testcases/data/st_no_digestion.msalign 272 672 902 75 7 4506.4671082187515 4506.482108218751 7116 gi|16766968|ref|NP_462583.1| selenocysteine synthase [Salmonella typhimurium LT2] 51111.632959561764 1 338 .M(TSETRTLYSQLPAIDRLLHDSAFLSLRDRYGHTQVVDLLRRMLDDARDVIRNTQTLPDWYADWAQEAKLRLENAAQSALRPVINLTGTVLHTNLGRALQAQEAIEAVTQAMRAPVTLEYDLDGAGRGHRDRALATLLCRITGAEDACIVNNNAAAVLLMLAATASGKEVVVSRGELVEIGGAFRIPDVMRQAGCTLHEVGTTNRTHAKDYRQAVNENTGLLMKVHTSNYSIEGFTKTVEEAELAEIGRELDIPVVADLGSGSLVDLSQYGLPKEPMPQQLIAAGVSLVSFSGDKLL)[-32237.66]GGPQAGIIVGKKAMIAQLQSHPLKRALRADKMTLAALEATL.R 1 9.0 9.0 0.0012233704809190317 10.383169003914752 0.10634081902245707
/home/xiaowen/c_project/proteomics_cpp/testcases/data/st_no_digestion.msalign 1999 3158 4216 106 32 22491.6608765 22491.706728177494 1346 gi|16764071|ref|NP_459686.1| ornithine decarboxylase isozyme [Salmonella typhimurium LT2] 83252.50953121705 537 732 L.NSILFLLTPAEDMAKLQQLVALLARFEKLLEADAPLAEVLPSIYKQHEARYAGYTLRQLCQEMHDLYARHNVKQLQKEMFRKSHFPKVSMNPQEANYAYLRGEVELVRLPEAEGRIAAEGALPYPPGVLCVVPGEIWGGSVLRYFSALEEGINLLPGFAPELQGVYIEEHDGRKQVWCYVIKPRDAQRSLLKEEKL. 0 4.0 4.0 0.17354821313186777 10.412892787912066 0.10627062706270628
/home/xiaowen/c_project/proteomics_cpp/testcases/data/st_no_digestion.msalign 962 1388 1856 30 21 16007.675164800781 16007.588449674075 2814 gi|16764802|ref|NP_460417.1| putative NADH-quinone reductase [Salmonella typhimurium LT2] 24416.262289243165 73 223 Y.VMIIASVVSAVQMLINAYAFGLYQSLGIFIPLIVTNCIVVGRAEAFAAKKGPWLSALDGFSIGMGATGAMFVLGSLREILGNGTLFDGADSLLGGWAKVLRVEIFHTDSPFLLAMLPPGAFIGLGLMLAVKYLIDEKMKKRRAETAPSAVP.A 0 4.0 4.0 0.0014996589232398304 10.588719923241683 0.10686015831134564
/home/xiaowen/c_project/proteomics_cpp/testcases/data/st_no_digestion.msalign 509 916 1227 63 11 7709.892821191405 7709.806665616452 2384 gi|16764587|ref|NP_460202.1| adenylosuccinate lyase [Salmonella typhimurium LT2] 51628.67388744873 243 308 N.PYTTQIEPHDYIAELFDCIARFNTILIDFDRDVWGYIALNHFKQKTIAGEIGSSTMPHKVNPIDFE.N 0 5.0 5.0 0.002267978162414438 10.654905085022587 0.10678971654581411
/home/xiaowen/c_project/proteomics_cpp/testcases/data/st_no_digestion.msalign 108 493 663 71 7 4568.483154464844 4568.436727719723 4650 gi|16765730|ref|NP_461345.1| putative chloride channel permease [Salmonella typhimurium LT2] 43126.637407498776 31 71 A.MKVASVFQQFLWQRLPTSIGIAYDSPFWIVGMLTLTGIVVG.L 0 7.0 6.0 0.003399210397451814 10.670141293320507 0.1067193675889328
/home/xiaowen/c_project/proteomics_cpp/testcases/data/st_no_digestion.msalign 559 966 1294 47 6 4628.4342180859385 4628.417196469723 7402 gi|16767113|ref|NP_462728.1| 2-oxo-3-deoxygalactonate 6-phosphate aldolase/galactonate dehydratase [Salmonella typhimurium LT2] 42579.669676022946 157 199 N.SRAVDAAVNTVAQIREAFGSEIEFGLDFHGRVSAPMAKVLIKE.L 0 4.0 4.0 0.0033413026654618666 10.736228387446031 0.10730743910467412
/home/xiaowen/c_project/proteomics_cpp/testcases/data/st_no_digestion.msalign 829 1247 1668 18 9 10657.620668015625 10657.592954831547 3174 gi|16764985|ref|NP_460600.1| ATP-dependent helicase [Salmonella typhimurium LT2] 149189.22620983643 161 253 F.SDHVSSNTMVKLMTDGILLAEIQQDRLLMQYDTLIIDEAHERSLNIDFLLGYLKELLPRRPDLKVIITSATIDPERFSRHFNNAPIIEVSGRT.Y 0 5.0 4.0 0.0018772990010651304 10.966148629593533 0.10789473684210527
/home/xiaowen/c_project/proteomics_cpp/testcases/data/st_no_digestion.msalign 275 675 906 75 8 4506.46569159375 4506.485691593751 2560 gi|16764674|ref|NP_460289.1| putative regulatory protein [Salmonella typhimurium LT2] 20484.881208615723 2 178 M.(TYQQAGRIAI)[42.01]LKRVVGWV(IFIPALLSTLISVLKFMYAHSEKQEGINAVMLDFTHVMIDMMRVNTPFLNVFWYNSPTPNFQGSLNIGFWLIFILIFVGLAMQDSGARMSRQSRFLREGVEDQLILEKAKGAEGLTREQIESRIVVPHHTIFLQFFPLYILPVIIIVLGYFFFSLLGF)[-15889.37]M. 1 6.0 6.0 1.1110116790067561 11.122226106762128 0.10848126232741617
/home/xiaowen/c_project/proteomics_cpp/testcases/data/st_no_digestion.msalign 919 1342 1795 54 15 10157.466680593749 10157.566381650387 3712 gi|16765259|ref|NP_460874.1| methyl esterase [Salmonella typhimurium LT2] 37641.57352276367 96 192 R.ALELGAIDFVTKPQLGIREGMLAYSEMIAEKVRTAARARIAAHKPMAAPTTLKAGPLLSSEKLIAIGASTGGTEAIRHVLQPLPLSSPAVIITQHMP.P 0 5.0 5.0 0.0019978604180081903 11.229469837183462 0.10840998685939553
/home/xiaowen/c_project/proteomics_cpp/testcases/data/st_no_digestion.msalign 1445 1998 2670 25 18 15163.590067695313 15163.474542813718 1932 gi|16764362|ref|NP_459977.1| putative diaminopropionate ammonia lyase [Salmonella typhimurium LT2] 44580.18616314453 120 256 V.FVTATDGNHGRGVAWAAEQLGLKAVVYMPKGSSLIRAENIRHHGAECTITDLNYDDAVRLAHRMAQTKGWVLLQDTAWTGYEEIPTWIMQGYMTLAVEAYEQLAETNSPLPTHLILQAGVGSFAGSVMGYFVEKMQE.N 0 4.0 4.0 0.0016328375641977615 11.30419434825497 0.10965200262639527
/home/xiaowen/c_project/proteomics_cpp/testcases/data/st_no_digestion.msalign 1490 2062 2755 25 36 27428.457667875005 27428.237436490483 7108 gi|16766964|ref|NP_462579.1| putative cytoplasmic protein [Salmonella typhimurium LT2] 74870.05223675293 29 268 V.VIPYQWDALNDRIPEAEPSHAIENFRIAAGQQTGDFYGMVFQDSDVAKWLEAVAWSLCQKPDPALEKTADEVIELVAAAQCDDGYLNTYFTAKAPQERWSNLAECHELYCAGHLIEAGVAFFQATGKRRLLDVVCRLADHIDSTFGPGENQLHGYPGHPEIELALMRLYEVTEQPRYMTLASYFIGQRGAQPHFYDEEYEKRGQTSYWHTYGPAWMVKDKAYSQAHLPISQQQTAIGHAV.R 0 4.0 4.0 0.0015683648393017612 11.416791113698496 0.11023622047244094
/home/xiaowen/c_project/proteomics_cpp/testcases/data/st_no_digestion.msalign 274 674 904 75 6 4506.466205507813 4506.413896756589 840 gi|39546296|ref|NP_459431.2| putative transport protein [Salmonella typhimurium LT2] 48739.14178295654 195 234 L.NRESGMVKGSFSKVLAEPRLLKLNFGIMCLHILLMSTFVA.L 0 5.0 5.0 0.003959597606555646 12.454512161129975 0.11409836065573771
/home/xiaowen/c_project/proteomics_cpp/testcases/data/st_no_digestion.msalign 672 1087 1455 12 5 4428.058822656251 4428.058822656251 8788 gi|16767811|ref|NP_463426.1| purine-nucleoside phosphorylase [Salmonella typhimurium LT2] 26189.099310117188 154 194 N.(LFS)[4.03]ADLFYSPDGEMFDVMEKYGVLGVEMEAAGIYGVAAEFG.A 1 6.0 5.0 0.0040596421056872615 12.47391444505733 0.11402359108781127
/home/xiaowen/c_project/proteomics_cpp/testcases/data/st_no_digestion.msalign 1998 3157 4215 74 21 13359.703401914063 13359.872106748044 7570 gi|16767197|ref|NP_462812.1| dTDP-glucose 4,6-dehydratase [Salmonella typhimurium LT2] 39778.98072262329 161 279 Y.SASKASSDHLVRAWLRTYGLPTLVTNCSNNYGPYHFPEKLIPLMILNALAGKPLPVYGNGQQIRDWLYVEDHARALYHVVTNGAVGETYNIGGHNERKNLDVVRTICALLEELAPQKPQ.G 0 6.0 6.0 0.0019373058185748922 12.701760997835374 0.114603798297315
/home/xiaowen/c_project/proteomics_cpp/testcases/data/st_no_digestion.msalign 1486 2058 2750 35 36 29091.732322484382 29091.668100552983 5890 gi|16766354|ref|NP_461969.1| glycine cleavage complex protein P [Salmonella typhimurium LT2] 104961.94153042359 653 920 T.YPSTHGVYEETIREVCEVVHQFGGQVYLDGANMNAQVGITSPGFIGADVSHLNLHKTFCIPHGGGGPGMGPIGVKAHLAPFVPGHSVVQIEGMLTRQGAVSAAPFGSASILPISWMYIRMMGAEGLKQASQVAILNANYIASRLKDAYPVLYTGRDGRVAHECILDIRPLKEETGISELDIAKRLIDYGFHAPTMSFPVAGTLMVEPTESEGKAELDRFIDAMLAIRAEIDQVKAGVWPLEDNPLVNAPHIQSELVAEWAHPYSREVA.V 0 4.0 4.0 0.0017911589610681644 12.754573972289233 0.11452879581151833
/home/xiaowen/c_project/proteomics_cpp/testcases/data/st_no_digestion.msalign 444 851 1140 40 13 8094.020568582031 8094.048227506105 1388 gi|16764092|ref|NP_459707.1| putative ABC transporter permease protein [Salmonella typhimurium LT2] 29783.603594022217 25 97 G.RYRRSVLGPFWITISMGVTISAMGPLYGSLFSSGSENFIMHLTLGMIFWAFLSATINESCGIFNESASIIKQS.D 0 5.0 4.0 0.0029135817941619902 14.124987776306074 0.11772400261608895
/home/xiaowen/c_project/proteomics_cpp/testcases/data/st_no_digestion.msalign 75 449 604 35 11 6409.35910134375 6409.35910134375 2880 gi|16764835|ref|NP_460450.1| putative chloride channel protein [Salmonella typhimurium LT2] 45779.39550610107 1 429 .MHRLHAYPDLRAMFRRLLI(ATLIGILAALAVAAFRHAMQLLEWIFLSNDTGSLVNAAEGLSPWRRLITPALGGLAAGLLLWGWQKMNQQRPHAPTDYMEALQTDGQFDVGASLVKSLASLLVVVSGSAIGREGAMILLAALAASSFARRFTPREEWKLWIASGAAAGMAGAYHAPLAGSLFIAEILFGTLMLASLGPVVVSAVVALLTTHVLNGSDSLLYTVHLTVDLHAREYVMIVSTGLVAGLCGPLLMWLMTASHNSFLRLKLSPPWQLALGGLIVGLLSLLTPTVWGNGYSVVQSFLLSPPLFSLIGGIFVCKILAVLASSGSGAPGGVFTPTLFVGLSIGMFLGRIWGFWLPGSDEIAILLGLAGMATLLAATTHAPIMSTLMICEMTGEY)[-39370.04]QLLPGLLIACVVASVLSRTLRHDSIYRQHAAEH. 1 5.0 5.0 0.3940426647768391 14.83272824892493 0.11764705882352941
/home/xiaowen/c_project/proteomics_cpp/testcases/data/st_no_digestion.msalign 1613 2236 2987 31 11 8823.825841136722 8823.723425107419 896 gi|16763844|ref|NP_459459.1| putative ammonium transport protein [Salmonella typhimurium LT2] 44661.552282529294 260 346 A.TAAAILGWIIGEWTLRGKPSLLGACSGAIAGLVGVTPACGYVGVGGALVIGVIAGLAGLWGVTMLKRLLRVDDPCDVFGVHGVCGIV.G 0 4.0 4.0 0.003083810308697039 16.06056952546183 0.1201828870019595
/home/xiaowen/c_project/proteomics_cpp/testcases/data/st_no_digestion.msalign 560 967 1295 33 6 4628.4342180859385 4628.4342180859385 1842 gi|16764317|ref|NP_459932.1| cytochrome-related transporter [Salmonella typhimurium LT2] 63063.683111386716 535 573 R.GLARFDQIIVMDDGHIIERGTHAELLAGQGRYYQFK(Q)[114.09]RL. 1 4.0 4.0 0.8102907400079354 16.491389137454288 0.12140992167101827
/home/xiaowen/c_project/proteomics_cpp/testcases/data/st_no_digestion.msalign 835 1253 1676 31 15 10406.187342542968 10406.234544949955 1858 gi|16764325|ref|NP_459940.1| anaerobic dimethyl sulfoxide reductase subunit A [Salmonella typhimurium LT2] 91201.27554913086 252 343 G.VTYYLEQARQKSNARMIIIDPRYTDTGAGREDEWIPIRPGTDAALVNGLAYVLITENMVDQPFLDKYCVGYDEKTLPASAPKNGHYKAYILG.Q 0 4.0 4.0 0.002906930284377871 16.75973950379642 0.12133072407045009
/home/xiaowen/c_project/proteomics_cpp/testcases/data/st_no_digestion.msalign 188 580 779 41 12 6250.605019171875 6250.620019171876 5616 gi|16766219|ref|NP_461834.1| putative permease [Salmonella typhimurium LT2] 52649.9423391394 96 498 K.WLGKRREEWALAITGYIVSIPIFVDSAFVILYPVAKALAKSGKRSL(LTLGVALAGGLVVTHHTVPPTPGPLGVAGIFNVDIGAMLLTGMALAVPCVIGIVFYAQWLDKRYPDFVPRTLNADEVNAALEQYNKEKEQKELPSLTLSLLPIVVPIVLIFLKAICSTLATVEGWSGLATHPVVQAINFVGSPVIALAISVLLAVYTLVPRMDKHTTAERLEEGLQSAGIILLVTGAGGALGAILRDSGAGQQLAEQVANLPISPILIPFIVATLVRLIQGSGTVAMITAASISAPILAQIPGINMLLAAQAATMGSLFFGYFNDSLFWVVNRMMGVSDVKQQMVVWSVPTTIAWAIGGTGVVLINLLFGSGGSWLDPLLPIVVLAAIMLWVRWQAQGIK)[-36573.81]DKLVVKD. 1 6.0 6.0 0.004229420052176644 17.27233289693115 0.12190352020860495
/home/xiaowen/c_project/proteomics_cpp/testcases/data/st_no_digestion.msalign 510 917 1228 35 10 7709.888073265624 7709.936567502446 2292 gi|16764541|ref|NP_460156.1| RNase E [Salmonella typhimurium LT2] 119614.23135586304 865 938 A.LPQPVVAEQQVIAATAALEPQASVQAVENVAVEPQTVAEPQAPEVVEVETTHPEVIAAPVDEQPQLIAESDTPV.A 0 4.0 4.0 0.003977983857105284 18.688393951884898 0.1244299674267101
/home/xiaowen/c_project/proteomics_cpp/testcases/data/st_no_digestion.msalign 228 626 840 70 6 5124.5506135703135 5124.626917081303 3014 gi|16764903|ref|NP_460518.1| putative glycosyl hydrolase [Salmonella typhimurium LT2] 95197.72521038575 261 306 K.AYLARLRQEVGPACYITVEKILAKGEQLPDDWPVSGTTGYEFIASL.A 0 5.0 4.0 0.005827164527047135 20.260022502491505 0.12630208333333334
/home/xiaowen/c_project/proteomics_cpp/testcases/data/st_no_digestion.msalign 1995 3153 4210 107 44 29380.17257164063 29380.59938641113 7436 gi|39546377|ref|NP_462745.2| putative reverse transcriptase [Salmonella typhimurium LT2] 36219.22737331909 1 252 .MDILQHISDLLLTKKSEIISFSLTAPYRYKIYKIAKRNSDKKRTIAHPSKELKFIQREITEYLTDKLPVHECAFAYKKGSSIKTNAQVHLHTKYLLKMDFENFFPSITPRLFFSKLRLANIDLTADDKVLLENILFFKSKRNSNLRLSIGAPSSPLISNFVMYFWDIEVQEICSKIGVNYTRYADDLTFSTNNKDVLFDIPDMLENVLPKYSLGRIRINHEKTVFSSKGHNRHVTGITLTNDNKLSIGRERK.R 0 4.0 4.0 0.16783385581500795 20.30789655361596 0.1262199089134678
/home/xiaowen/c_project/proteomics_cpp/testcases/data/st_no_digestion.msalign 1142 1615 2159 36 14 12761.053321250001 12760.886476712642 114 gi|16763447|ref|NP_459062.1| putative citrate-sodium symporter [Salmonella typhimurium LT2] 47932.553228574216 95 213 V.YAGIFTQKEIDAISNVMDKSNFLNLFIAVLITGAILSVNRKLLLKSLLGYIPTILAGIVGASLFGIVIGLCFGIPVDRIMMLYVLPIMGGGNGAGAVPLSEIYHSVTGRSREEYYSTAI.A 0 5.0 4.0 0.003177949131141345 20.371843120757237 0.12613784135240572
/home/xiaowen/c_project/proteomics_cpp/testcases/data/st_no_digestion.msalign 978 1406 1880 26 20 16007.650885624998 16007.597559171141 4262 gi|16765537|ref|NP_461152.1| proton efflux pump [Salmonella typhimurium LT2] 43077.631185727536 212 356 P.RRNRRDTLLLFVICTLMWGTNSLYIINMPLFIINELHLPEKLAGVMMGTAAGLEIPTMLIAGYFAKRLGKRLLMCIAVVAGLCFYVGMLLAHAPATLLGLQLLNAIYIGILGGIGMLYFQDLMPGQAGSATTLYTNTIRVGWIIA.G 0 4.0 4.0 0.003112499100678798 21.97658056435806 0.1286549707602339
/home/xiaowen/c_project/proteomics_cpp/testcases/data/st_no_digestion.msalign 1980 3136 4187 29 10 6250.642764531251 6250.65276453125 676 gi|16763733|ref|NP_459348.1| putative cation transport ATPase [Salmonella typhimurium LT2] 80415.64563961548 613 675 V.AEVLPEGKVEAIRRLKAAYGQVAF(VGDGINDAPALAESDVGLAIGTGTDVAVESADVVLMSGN)[-44.58].L 1 6.0 6.0 0.0050997157131828195 23.039993312795005 0.12857142857142856
/home/xiaowen/c_project/proteomics_cpp/testcases/data/st_no_digestion.msalign 1930 2860 3819 36 20 15735.439286296876 15735.267404752201 5556 gi|16766188|ref|NP_461803.1| secreted effector protein [Salmonella typhimurium LT2] 74181.61219234986 40 184 T.ATLSGEIKGPQLEDFPALIKQASLDALFKCGKDAEALKEVFTNSNNVAGKKAIMEFAGLFRSALNATSDSPEAKTLLMKVGAEYTAQIIKDGLKEKSAFGPWLPETKKAEAKLENLEKQLLDIIKNNTGGELSKLSTNLVMQEVM.P 0 4.0 4.0 0.0034038642736929606 23.75603851359085 0.12848799480856588
/home/xiaowen/c_project/proteomics_cpp/testcases/data/st_no_digestion.msalign 313 713 956 62 13 8518.722304843752 8518.642172055661 1598 gi|16764198|ref|NP_459813.1| putative transporter [Salmonella typhimurium LT2] 41362.56236095947 14 88 R.FFQLLIIVGMALSLFVPFAPRAWPGAIDWHTIITLSGLMLLTKGVELSGYFDVLGRKMTRRFHTERQLAMFLVLA.A 0 6.0 5.0 0.004704856745794481 23.78400321346825 0.12840466926070038
/home/xiaowen/c_project/proteomics_cpp/testcases/data/st_no_digestion.msalign 291 691 927 75 7 4538.440489890625 4538.494039731442 500 gi|16763643|ref|NP_459258.1| transcriptional regulator [Salmonella typhimurium LT2] 50113.81583614868 235 274 V.PKMLALSEILKNSKRYGVRLPTTDESRALARVRLNSPVEM.A 0 4.0 4.0 0.007581385108754408 23.820863421694817 0.12832145171743356
/home/xiaowen/c_project/proteomics_cpp/testcases/data/st_no_digestion.msalign 1928 2855 3812 14 8 7433.9874110625 7433.8824110625 458 gi|16763622|ref|NP_459237.1| acetylCoA carboxylase alpha subunit [Salmonella typhimurium LT2] 35435.30261059326 54 119 K.(IFADLGAWQ)[40.08]VAQLARHPQRPYTLDYVRLAFDEFDELAGDRAYADDKAIVGGIARLEGRPVMIIGHQ.K 1 5.0 5.0 0.006017345193614997 27.67005986140631 0.13082901554404144
/home/xiaowen/c_project/proteomics_cpp/testcases/data/st_no_digestion.msalign 872 1292 1728 115 17 8948.89759061719 8948.92941494507 6924 gi|39546371|ref|NP_462487.2| putative ABC-type multidrug transport system ATPase component [Salmonella typhimurium LT2] 100802.84052868409 727 807 L.LLMMIPSMLSALSVVREKELGSMINLYVTPTTRSEFLLGKQLPYIALGMLNFLLLCALSVFVFGVPLKGSFLTLTLAALLY.V 0 7.0 7.0 0.005402096284074411 28.38064458995899 0.1307443365695793
/home/xiaowen/c_project/proteomics_cpp/testcases/data/st_no_digestion.msalign 1991 3149 4204 56 40 25530.11067109376 25529.921270566407 188 gi|16763486|ref|NP_459101.1| RNA polymerase-associated protein [Salmonella typhimurium LT2] 110196.15320797486 241 463 H.DAYNPFETEQLVICSLDFARRNKQRLEHLCDAEWDLLVVDEAHHLVWSTDAPSREYMAIEQLAERVPGVLLLTATPEQLGMESHFARLRLLDPNRFHDFEQFVEEQKNYRPVADAVAMLLAGNKLSNDELNRLGDLIGEQDIEPLLQAANSDRDDAQAARDELVSMLMDRHGTSRVLFRNTRNGVKGFPKRELHTVKLPLPTQYQTAIKVSGIMGARKSPEDR.A 0 5.0 5.0 0.003936634416664308 29.096379744284338 0.13065976714100905
/home/xiaowen/c_project/proteomics_cpp/testcases/data/st_no_digestion.msalign 588 996 1334 55 12 8985.913068593753 8985.9193212561 1642 gi|16764220|ref|NP_459835.1| putative dehydrogenase [Salmonella typhimurium LT2] 62449.0402738623 20 104 V.LIVGAGPAGLSAALKLKLQANDAGKELSIIVLDKGAEPGSHILSGAVMDPRALNELIPDWQERGAPIKQPVTQDKLLLLTNEKCI.N 0 4.0 4.0 0.005772003018419878 30.28376918137255 0.1305753070458953
/home/xiaowen/c_project/proteomics_cpp/testcases/data/st_no_digestion.msalign 189 583 783 20 11 6348.576445535156 6348.546445535157 5696 gi|16766259|ref|NP_461874.1| CTP synthetase [Salmonella typhimurium LT2] 60540.17715282959 198 254 E.LLSIGIQPDILICRSDRAVPANERAKIALFCNVPEKAVISMK(DVDSIYKIPGLLKSQ)[-13.92].G 1 5.0 5.0 0.0074264644418591775 30.96505102452144 0.13049095607235142
/home/xiaowen/c_project/proteomics_cpp/testcases/data/st_no_digestion.msalign 111 496 667 48 8 4568.4788691875 4568.423750119626 1176 gi|16763986|ref|NP_459601.1| alkyl hydroperoxide reductase F52a subunit [Salmonella typhimurium LT2] 56257.14065380615 406 448 N.VDIILNAQTTEVKGDGSKVVGLEYRDRVSGDIHSVALAGIFVQ.I 0 4.0 4.0 0.009712318689318305 31.268768818020696 0.13040671400903808
/home/xiaowen/c_project/proteomics_cpp/testcases/data/st_no_digestion.msalign 279 679 911 52 8 4506.4691095625 4506.455709653324 8604 gi|16767720|ref|NP_463335.1| valine tRNA synthetase [Salmonella typhimurium LT2] 108562.72675152344 835 875 V.RRVNDNRSFLQTLARLESITVLPADDKGPVSVTKIIDGAEL.L 0 4.0 4.0 0.009992842607901323 31.43137346231885 0.13096774193548388
/home/xiaowen/c_project/proteomics_cpp/testcases/data/st_no_digestion.msalign 1675 2305 3079 33 24 17715.558298468753 17715.317945676266 4848 gi|16765831|ref|NP_461446.1| IMP dehydrogenase [Salmonella typhimurium LT2] 52201.056299405514 136 299 T.GRDVRFVTDLNQPVSVYMTPKERLVTVREGEAREVVLAKMHEKRVEKALVVDDNFHLLGMITVKDFQKAERKPNSCKDEQGRLRVGAAVGAGAGNEERVDALVAAGVDVLLIDSSHGHSEGVLQRIRETRAKYPDLQIIGGNVATGAGARALAEAGCSAVKVGI.G 0 4.0 4.0 0.004780283341719879 34.74337325326778 0.13088330109606705
/home/xiaowen/c_project/proteomics_cpp/testcases/data/st_no_digestion.msalign 1950 3075 4106 19 8 7267.63022746875 7267.7102274687495 946 gi|16763869|ref|NP_459484.1| ferrochelatase [Salmonella typhimurium LT2] 36119.49387188476 147 210 I.LARKRRIPGISFIRDYADDGAYIDALAKSARESFARHGEPDVLL(LSYHGIPQRYADEGDDYPQR)[-21.98].C 1 6.0 5.0 0.008109789496173924 36.32093286102234 0.1327319587628866
/home/xiaowen/c_project/proteomics_cpp/testcases/data/st_no_digestion.msalign 234 632 848 47 5 2839.507240472657 2839.507240472657 3822 gi|16765317|ref|NP_460932.1| flagellar biosynthetic protein [Salmonella typhimurium LT2] 26769.52238293213 221 245 P.FKLMLFVL(V)[-52.99]DGWQLLMGSLAQSFYS. 1 4.0 4.0 3.9783897143742792 37.00042646510474 0.13264649066323245
/home/xiaowen/c_project/proteomics_cpp/testcases/data/st_no_digestion.msalign 1686 2318 3096 59 18 17714.62526989844 17714.643049436032 952 gi|16763872|ref|NP_459487.1| putative transport protein [Salmonella typhimurium LT2] 59389.35606594604 143 309 L.DSQRGQIAIGWLIVEDLVMVLTLVLLPAVAGMVEKGDVGIASLTVDMGITIGKVVAFIAIMMLVGRRLVPWIMARSAATGSRELFTLSVLALALGIAFGAVELFDVSFALGAFFAGMVLNESELSHRAAHDTLPLRDAFAVLFFVSVGMLFDPLVLIQQPLAVLATL.A 0 5.0 5.0 0.006032294004802948 43.84425416818367 0.13706563706563707
/home/xiaowen/c_project/proteomics_cpp/testcases/data/st_no_digestion.msalign 881 1302 1742 94 17 10059.513734066408 10059.505361752927 840 gi|39546296|ref|NP_459431.2| putative transport protein [Salmonella typhimurium LT2] 48739.14178295654 123 215 A.LLSDLTREQNRTKAMAFIGVSFGITFAIAMVLGPIVTHSLGLNALFWMIAALATLGILLTIWVVPNSTNHVLNRESGMVKGSFSKVLAEPRLL.K 0 7.0 5.0 0.008725367344237078 49.2216317255141 0.1382636655948553
/home/xiaowen/c_project/proteomics_cpp/testcases/data/st_no_digestion.msalign 212 609 818 74 12 6251.608437140625 6251.603437140626 2856 gi|16764823|ref|NP_460438.1| putative periplasmic protein [Salmonella typhimurium LT2] 33894.480238156735 2 314 M.KLKNTLLASALLSA(AAFSVHAATELTPEQAAALKPYDRIVITGRFNAIGDAVSAVSRRADKEGAASFYVVDTSEFGNSGNWRVVADVYKADAPKADAPKNRVINGIVELPKDQAVQLEPYDTVTVQGFYRSQPEVNDAITKAAKQKGAYAFYIVRQIDANQGGNQRITAFIYKQDAKKRIVQSPDAIPADSEAGRA)[-19644.02]ALAQGGEAAKKVEIPGVATSASPSAEVGRFFETQSS(KGGRYTVTLPDGTKVEELNKATAAMMVPFDSVKFTGNYGNMTEISYQVAKRAAKKGAKYYHITRQWQERGNNITISADLY)[-7867.81]K. 2 11.0 10.0 0.018875621286410356 51.15321702991935 0.13881748071979436
/home/xiaowen/c_project/proteomics_cpp/testcases/data/st_no_digestion.msalign 1487 2059 2751 41 36 28233.577714921877 28233.26435680909 5772 gi|16766296|ref|NP_461911.1| exonuclease V beta chain [Salmonella typhimurium LT2] 134412.3427564673 750 998 Y.PLVWLPFITHFRVQDQAFYHDRHSYEAVLDLSHAEESIALAEAERLAEDLRLLYVALTRAVWHCSLGVAPLVRRRSDKKGETDVHQSALGRLLQKGEPMDAAGLRACIEALCDEDIVCRTPGNTDNDRWQIAAASHAELSARALQRLLYDSWRVTSYSGLQQRGHSVAQDLIPRLDIDAAGVGEAAEAPAMTPHHFPRGASPGTFLHSLFEELDFTQPINPQWVQEKLELSGFETRWEPVLTRWLDTVL.H 0 4.0 4.0 0.007356926741291965 52.94329382686608 0.13872832369942195
/home/xiaowen/c_project/proteomics_cpp/testcases/data/st_no_digestion.msalign 1441 1991 2660 42 34 25769.689905625004 25769.930120664067 5844 gi|16766330|ref|NP_461945.1| putative outer membrane usher protein [Salmonella typhimurium LT2] 90058.84850903077 203 441 D.YQYSRFDSGQGASQSDFYLPQTYLFRALPALRSKLTLGQTYLSSAIFDSFRFAGLTLASDERMLPPSLQGYAPKISGIANSNAQVTVSQNGRILYQTRVSPGPFELPDLSQNISGNLDVSVRESDGSVRTWQVNTASVPFMARQGQVRYKVAAGRPLYGGTHNNSTVSPDFLLGEATWGAFNNTSLYGGLIASTGDYQSAALGIGQNMGLLGALSADVTRSDARLPHGQKQSGYSYRIN.Y 0 4.0 4.0 0.007726464567884524 57.01212671573572 0.1392811296534018
/home/xiaowen/c_project/proteomics_cpp/testcases/data/st_no_digestion.msalign 817 1235 1652 29 11 8339.088770519535 8339.088770519535 6614 gi|39546367|ref|NP_462331.2| 30S ribosomal subunit protein S14 [Salmonella typhimurium LT2] 11113.053682523194 1 49 .(MKAREVKRVALADKYFAKRAELKAI)[2684.01]ISDVNATDEDRWNAVLKLQTLPRD.S 1 7.0 7.0 2.59216746113733E-4 62.12977345473909 0.13919178960872355
/home/xiaowen/c_project/proteomics_cpp/testcases/data/st_no_digestion.msalign 608 1016 1360 25 16 9534.3326030625 9534.3226030625 8574 gi|16767704|ref|NP_463319.1| aspartate carbamoyltransferase regulatory subunit [Salmonella typhimurium LT2] 17360.948869901124 1 85 .(MTHDN)[-38.74]KLQVEAIKCGTVIDHIPAQVGFKLLSLFKLTETDQRITIGLNLPSGEMGRKDLIKIENTFLTEEQVNQLALYAPQATVNR.I 1 4.0 4.0 1.0490296715341687 71.79574955995241 0.1423076923076923
/home/xiaowen/c_project/proteomics_cpp/testcases/data/st_no_digestion.msalign 157 544 731 65 8 5240.6110928125 5240.6610928125 1866 gi|16764329|ref|NP_459944.1| putative amino-acid transporter [Salmonella typhimurium LT2] 52763.93295116943 73 473 V.STWIKHTMGPGLAYLAAWTYWVVHIPYLAQKPQAILIALGWAL(KGDGSLIKEYTVVALQGLTLALFVFFMWVASRGMKSLKVVGSVAGIAMFIMSILYVVMAVTAPAITNVEIATTNITWQSFIPHIDFTYITTISMLVFAVGGAEKISPYVNQTRNPGKEFPKGMLFLAVMVAVCAILGSLAMGMMFDSRHIPDDLMTNGQYYAFQKLGEYYHMGNSLMVIYAIANTLGQIAALVFSIDAPLKVLLGDADTKYIPQRLCRTNASGTPVNGYLLTLVLVAILIMLPTLGIGDMNNLYKWLLNLNSVVMPLRYLWVFVAFIAVIRLAQKYKPEYVFIRNRALALTVGIWCFAFTAFACLTGIFPKMEAFTPEWTFQLTLNIVTPFVLVGLGLIFPLLARR)[-39394.03]NT. 1 8.0 7.0 0.021883633961130362 77.12243506168984 0.14221652786675207
/home/xiaowen/c_project/proteomics_cpp/testcases/data/st_no_digestion.msalign 1368 1900 2539 53 24 17502.442647812502 17502.28861446899 418 gi|16763602|ref|NP_459217.1| putative inner membrane protein [Salmonella typhimurium LT2] 47124.187647061764 13 180 V.VVSAWIGNSIEYYDFLLYGLASALVFGPLFFPGASPLTATLSSFASFGVGFISRPLGALFFGNRGDTLGRKNTLLITLGGMGAVTFLIGCLPSYASIGALAPALLVILRFLQGFMVGGEWGGAMLMVVEYAAGKHRGRLSALSQTGGLTGQLLATGVFIVVTQLPQEA.L 0 5.0 4.0 0.010732902943264476 77.63917624350647 0.14212548015364918
/home/xiaowen/c_project/proteomics_cpp/testcases/data/st_no_digestion.msalign 499 906 1214 37 10 6435.620146523438 6435.620146523438 216 gi|16763501|ref|NP_459116.1| 3-isopropylmalate isomerase large subunit [Salmonella typhimurium LT2] 50210.211179929196 302 362 T.DIIPDPASFSDPVERASAEKALAYMGLQPGVPLTDVAIDKVFIGSCTNSRIED(LRAAAEVA)[-20.64].K 1 7.0 5.0 0.01874951931994879 77.94117196206845 0.1420345489443378
/home/xiaowen/c_project/proteomics_cpp/testcases/data/st_no_digestion.msalign 202 599 804 28 13 6347.562015605469 6347.562015605469 868 gi|16763831|ref|NP_459446.1| ATP-dependent protease Lon [Salmonella typhimurium LT2] 87697.93292065186 671 732 E.(GATPKDGPSAGIAMCT)[53.20]ALVSCLTGNPVRADVAMTGEITLRGQVLPIGGLKEKLLAAHRGGIK.T 1 7.0 5.0 0.022218103907628236 90.95816572970497 0.1432225063938619
/home/xiaowen/c_project/proteomics_cpp/testcases/data/st_no_digestion.msalign 1129 1602 2142 15 12 8740.665326859376 8740.665326859376 7714 gi|16767270|ref|NP_462885.1| response regulator [Salmonella typhimurium LT2] 52352.32987804931 317 394 E.DIPRLARHFLQVAARELGVEAKLLHPETETALTRLAWPGNVRQLENTCRWLTVMAAG(QEVLIQDLPGELFEASTPDSP)[.12].S 1 5.0 5.0 0.021036269463683567 108.42077609206537 0.14313099041533547
/home/xiaowen/c_project/proteomics_cpp/testcases/data/st_no_digestion.msalign 1761 2452 3275 18 7 8119.024358625 8119.0493586249995 3218 gi|16765007|ref|NP_460622.1| putative integral membrane protein [Salmonella typhimurium LT2] 38896.470781522214 259 326 I.(RNML)[34.01]QAHRDIDQKQTLLVYFNEFADSSLNIMVYCFTKTTVWQEWLAVQQDVYLKIIAIVQENGADFAF.P 1 5.0 5.0 0.022246448481097077 109.33604191042296 0.14303959131545338
/home/xiaowen/c_project/proteomics_cpp/testcases/data/st_no_digestion.msalign 497 904 1211 43 5 2887.643215800782 2887.668215800782 5302 gi|16766058|ref|NP_461673.1| putative ATPase [Salmonella typhimurium LT2] 49915.044470029294 9 35 V.NNLFGILNYDIDLGNSETIII(TGPNGY)[-51.79].G 1 5.0 5.0 0.04058479831506498 112.06626437527363 0.1429483088704531
/home/xiaowen/c_project/proteomics_cpp/testcases/data/st_no_digestion.msalign 1157 1630 2179 24 16 12860.0143401875 12860.1743401875 7954 gi|16767390|ref|NP_463005.1| soluble pyridine nucleotide transhydrogenase [Salmonella typhimurium LT2] 52032.00022717041 1 466 .(MPH)[42.01]SWDYDAVVIGSGPGGEGAAMGLVKQGARVAVIERYHNVGGGCTHWGTIPSKALRHAVSRIIEFNQNPLYSDHSRL(LRSSFADILNHADNVINQQTRMRQGFYERNHCEILQGNAHFIDEHTLALECHDGTVETLTAEKFVIACGSRPYHPNDVDFSHPRIYDSDSILSLHHEPRHVIIYGAGVIGCEYASIFRGMDVKVDLINTRDRLLAFLDQEMSDSLSYHFWNSGVVIRHNEEYEKIEGCDDGVIMHLKSGKKLKADCLLYANGRTGNTDSLALENIGLETDSRGQLKVNSMYQTALPHVYAVGDVIGYPSLASAAYDQGRIAAQALVKGEATAHLIEDIPTGIYTIPEISSVGKTEQQLTAMKVPYEVGRAQFKHLARAQIVGMNVGTLKILFHRETKEILGIHCFGERAAEIIHIGQAIMEQKGGGNTIEYFVNTTFNYPTMAEAYR)[-39213.84]VAALNGLNRLF. 1 4.0 4.0 1.2397547957052035 119.76312905071792 0.1434948979591837
/home/xiaowen/c_project/proteomics_cpp/testcases/data/st_no_digestion.msalign 496 903 1210 48 5 2887.643215800782 2887.623215800782 2138 gi|16764462|ref|NP_460077.1| 4-hydroxyphenylacetate catabolism [Salmonella typhimurium LT2] 14304.210382657471 17 44 A.DLPGLFSKVNEALAASGIFPIGGIRSRA()[32.06].H 1 5.0 5.0 0.056834816307649944 125.53003979600776 0.14340344168260039
/home/xiaowen/c_project/proteomics_cpp/testcases/data/st_no_digestion.msalign 2016 3180 4246 14 10 5377.094922898436 5377.0599228984365 4566 gi|16765688|ref|NP_461303.1| putative regulatory protein [Salmonella typhimurium LT2] 53476.34038372558 210 260 G.ALPPTLIESTLFGTVRGAYTGAENSQGYLELANGGTLFLD(ELNA)[-22.60]MPIEMQS.K 1 4.0 4.0 0.03531183858093314 130.04412024755933 0.14331210191082802
/home/xiaowen/c_project/proteomics_cpp/testcases/data/st_no_digestion.msalign 1436 1983 2650 16 21 19647.18095298829 19647.18095298829 4828 gi|39546344|ref|NP_461434.2| phosphoribosylaminoimidazole synthetase [Salmonella typhimurium LT2] 37745.11950130981 55 238 C.ALPQKYREPVLVSGTDGVGTKLRLAMDLKRHDAIGIDLVAMCVNDLVVQGAEPLFFLDYYATGKLDVDTAASVINGIAEGCLQSGCALVGGETAEMPGMYHGEDYDVAGFCVGVVEKSEIIDGSRVAEGDVLIALGSSGPHSNGYSLV(RKIIDVSGCDPQTTLLEGKPLADHLLEPTRIYVKSV)[-22.71].L 1 5.0 5.0 0.022943749733186296 170.37440072001684 0.14449395289624442
/home/xiaowen/c_project/proteomics_cpp/testcases/data/st_no_digestion.msalign 1673 2303 3076 11 14 12106.00755740625 12105.94255740625 3014 gi|16764903|ref|NP_460518.1| putative glycosyl hydrolase [Salmonella typhimurium LT2] 95197.72521038575 468 572 T.LFFRQNMGLALNEVGAEPVTHHFSIERFHHEMKTRQARQ(PDALSGTSTHDTKRGEDARARLYTLT)[-173.04]EAPEQWSECLARWRQMNQTHVKFLNDGTAPKSADTWMLYQ.A 1 5.0 5.0 0.008337965717624752 178.74511598427773 0.1450381679389313
/home/xiaowen/c_project/proteomics_cpp/testcases/data/st_no_digestion.msalign 1268 1758 2350 14 18 14043.622531851564 14043.552531851563 5842 gi|16766329|ref|NP_461944.1| putative fimbrial chaparone [Salmonella typhimurium LT2] 27690.407995419922 2 132 M.KNSRRSRVILLALAAAWSQYSPAAVNVDRTRIIMDAPQKTVAITLNN(DDKTTPFLAQSWVTDADGVRTDALMALPPLQRIDAGQKSQVRI)[-573.15]TQVRGLTDKLPQDRETLFWFNVRGVPPKPEDDNVLQLAMQS.Q 1 4.0 4.0 0.23319187799310173 218.9531563542256 0.1455816910362365
/home/xiaowen/c_project/proteomics_cpp/testcases/data/st_no_digestion.msalign 488 895 1199 47 8 6397.52741371875 6397.52741371875 840 gi|39546296|ref|NP_459431.2| putative transport protein [Salmonella typhimurium LT2] 48739.14178295654 312 372 L.FFLAFNLMEALLPSLISKESPAGYKGTAMGVYSTSQFLGVALGGSLGGWIDGTFDGQTV(FL)[21.31].A 1 6.0 5.0 0.05365996587410354 223.3582637635421 0.14612452350698857
/home/xiaowen/c_project/proteomics_cpp/testcases/data/st_no_digestion.msalign 1196 1676 2240 17 10 8390.590855531253 8390.600855531253 992 gi|16763892|ref|NP_459507.1| putative ABC transporter permease component [Salmonella typhimurium LT2] 23711.110613065186 109 188 D.SALREVDKGIIEAALAFGASPMRIICTVLLPEASAGLLRGLTITLVSLIGYSAMA(GIVGGGGVGDLAIRYGYYRYETEVM)[15.18].V 1 7.0 5.0 0.05008721517320934 250.85079561996542 0.14666666666666667
/home/xiaowen/c_project/proteomics_cpp/testcases/data/st_no_digestion.msalign 1747 2418 3230 21 19 13493.199128085938 13493.199128085938 4110 gi|16765461|ref|NP_461076.1| response regulator [Salmonella typhimurium LT2] 27861.62521572632 2 125 M.(TELPIDENTPRILIVEDEPKLGQLLIDYLRAASY)[42.01](APTLINHGDK)[-634.41]VLPYVRQTPPDLILLDLMLPGTDGLTLCREIRRFSDIPIVMVTAKIEEIDRLLGLEIGADDYICKPYSPREVVARVKTIL.R 1 4.0 4.0 0.27143957530622737 256.7670190773922 0.14720812182741116
/home/xiaowen/c_project/proteomics_cpp/testcases/data/st_no_digestion.msalign 1809 2566 3427 25 11 12217.512648773438 12217.577648773438 1946 gi|16764369|ref|NP_459984.1| exodeoxyribonuclease [Salmonella typhimurium LT2] 106713.52655621094 179 287 E.(ILRLEMDTDNSYVQNLLLAAENVEAFKKAIEH)[-23.83]DIHKIVNAVKKVFPVDGKTPELATVIQFLKTWFETEHIDRGLLVKEWAKGNRVSAIQRTESGANAGGGNKTDRNPDY.E 1 5.0 5.0 0.041597599348394125 262.11831449659076 0.1471147748890298
/home/xiaowen/c_project/proteomics_cpp/testcases/data/st_no_digestion.msalign 50 423 570 50 9 4416.472315091797 4416.522315091798 4028 gi|16765420|ref|NP_461035.1| CDP-6-deoxy-D-xylo-4-hexulose-3-dehydrase [Salmonella typhimurium LT2] 48529.50673504394 348 437 F.PITLKETSGVNRVELVKFLDEAKIGTRLLFA(GNLIRQPYFANVKYRVVGELTNTDRIMNQTFWIGIYPGLTTEHLDYVVSKFEEFFG)[-5981.96]LNF. 1 6.0 5.0 0.2502327417912396 262.36101911938425 0.14702154626108999
/home/xiaowen/c_project/proteomics_cpp/testcases/data/st_no_digestion.msalign 385 791 1060 55 13 7210.265914574221 7210.265914574221 1240 gi|16764018|ref|NP_459633.1| putative cytoplasmic protein [Salmonella typhimurium LT2] 17445.16168423218 41 105 A.GKRGKNADIKRILDKEGEQMLAAAGKNRIVTLDIPGKPWDTPQLANELERWKQD(GRDVSLLIGGP)[35.41].E 1 5.0 5.0 0.06343251917547461 284.6692434329344 0.14756174794173527
/home/xiaowen/c_project/proteomics_cpp/testcases/data/st_no_digestion.msalign 353 754 1011 48 13 7210.282577171877 7210.297577171878 1308 gi|16764052|ref|NP_459667.1| N-acetylglucosamine operon transcriptional repressor [Salmonella typhimurium LT2] 44983.762853818356 22 86 A.AVYRLIDQHGPISRIQIAEQSQLAPASVTKITRQLIERGLIKEVDQQASTGGRRAIS(IVTETRNF)[-15.66].H 1 5.0 5.0 0.0636692148029397 290.4136649989944 0.14810126582278482
/home/xiaowen/c_project/proteomics_cpp/testcases/data/st_no_digestion.msalign 1378 1910 2552 29 25 17503.37574046485 17503.52574046485 2032 gi|16764409|ref|NP_460024.1| probable tail fiber protein [Phage Gifsy-2] 81490.82734509034 81 268 D.SKPGTLNDFLGAMTEDDVRPEALRRFEAMVEEVARQASEASRNATAAGQASEQAQTSAGQASESATAAVNAAGAAEASATQAASSAASAESSAGTATTKAGEASASAASADTARTAAAASAAAAKTSEANADASRTAAGDSAAAAAASATAAQTSAERAGA(SETAAKTSETQAASSAGDAGASATAAA)[5.33].A 1 5.0 5.0 0.04086479459198874 295.58939240608123 0.14800759013282733
/home/xiaowen/c_project/proteomics_cpp/testcases/data/st_no_digestion.msalign 1962 3100 4139 11 10 10180.587777390629 10180.517777390629 6090 gi|16766455|ref|NP_462070.1| putative cytoplasmic protein [Salmonella typhimurium LT2] 15496.960283475342 25 114 S.(KNLP)[-19.90]KGKTKLSDYEPDILISANAAGQHRNVLFEERDRHIKERLYCVAKIETFARLINALQAEGDIDAQTLSKILADKTAMINEKGNAIWL.N 1 5.0 5.0 0.05244925633734558 298.0181777867097 0.14791403286978508
/home/xiaowen/c_project/proteomics_cpp/testcases/data/st_no_digestion.msalign 480 887 1188 14 12 7977.955066640626 7978.060066640625 4950 gi|16765882|ref|NP_461497.1| putative transcriptional regulator [Salmonella typhimurium LT2] 49441.89538403076 175 249 F.(AQAIHNASPRS)[35.03]NKPFVAINCGALPEQLLESELFGHARGAFTGAVSNREGLFQAAEGGTLFLDEIGDMPAPLQVKL.L 1 4.0 4.0 0.06371133638069 305.59704764921827 0.147820593809223
/home/xiaowen/c_project/proteomics_cpp/testcases/data/st_no_digestion.msalign 561 968 1296 41 5 4024.8662538085946 4024.9212538085944 3438 gi|16765120|ref|NP_460735.1| isopentenyl monophosphate kinase [Salmonella typhimurium LT2] 31149.031511502686 43 78 H.IEPRHDGEIHLLTPVNGVENEDNLIVRAA(RLLMKVA)[-6.25].S 1 4.0 4.0 0.11349993979910433 325.4637411827337 0.14898989898989898
/home/xiaowen/c_project/proteomics_cpp/testcases/data/st_no_digestion.msalign 97 477 642 34 8 11120.861511 11120.741510999998 258 gi|16763522|ref|NP_459137.1| ATP-binding cell division protein [Salmonella typhimurium LT2] 45798.62402554077 287 387 R.(SLQRQTLAEVIEPRYTE)[-38.16]LLNLVNEEILQLQEQLRQQGVKHHLAAGIVLTGGAAQIEGLAACAQRVFHTQVRIGAPLNITGLTDYAQEPYYSTAVGLLHYGK.E 1 5.0 5.0 0.05737580980773566 341.5717343720697 0.14952681388012617
/home/xiaowen/c_project/proteomics_cpp/testcases/data/st_no_digestion.msalign 391 797 1068 27 10 7210.269370992187 7210.2543709921865 4398 gi|16765604|ref|NP_461219.1| ribonucleoside diphosphate reductase 1 alpha subunit [Salmonella typhimurium LT2] 86309.64438839478 2 610 M.NQSLL(VTKRDGRTERINLDKIHRVLDWAAEGLNNVSVSQVELRSHIQFYDGIKTSDIHETIIKAAADLISRDAPDYQYLAARLAIFHLRKKAFGQFEPPALYHHVVKMVELGKYDNHLLEDYTEEEFKQMDSFIVHDRDMTFSYAAVKQLEGKYLVQNRVTGEIYESAQFLYILVAACLFSNYPRETRLDYVKRFYDAVSTFKISLPTPIMSGVRTPTRQFSSCVLIECGDSLDSINATSSAIVKYVSQRAGIGINAGRIRALGSPIRGGEAFHTGCIPFYKHFQTAVKSCSQGGVRGGAATLFYPMWHLEVESLLVLKNNRGVEGNRVRHMDYGVQINKLMYTRLLKGGDITLFSPSDVPGLYDAFFADQDEFERLYVKYEHDDSIRKQRVKAVELFSLMMQERASTGRIYIQNVDHCNTHSPFDPVVAPVRQSNLCLEIALPTKPLNDVNDENGEIALCTLSAFNLGAIKTLDELEELAILAVRALDALLDYQDYPIPAAKRGAMGRRTLGIGVINFAYWLAKNGKRYSDGSANNLTHKTFEAIQYYLLKAS)[-62142.07]NELAKEQGACPWFNETTYAKGILPIDTYKKDLDAIVNEPLHYDWEQLRESIKTHG.L 1 5.0 5.0 0.02455767468467978 418.46802810985065 0.15006305170239598
/home/xiaowen/c_project/proteomics_cpp/testcases/data/st_no_digestion.msalign 238 636 854 51 10 6292.620891945312 6292.620891945312 1646 gi|16764222|ref|NP_459837.1| putative inner membrane protein [Salmonella typhimurium LT2] 15681.486143308106 87 141 G.(Q)[11.13]NKAMPMIILVCALLTYGGVSLFVVAFANLFFTWLIPHI(YGDQFMINLPGLKKPL)[59.14]. 2 8.0 8.0 0.3052815984591852 477.16551849836725 0.15248897290485192
/home/xiaowen/c_project/proteomics_cpp/testcases/data/st_no_digestion.msalign 1839 2625 3506 23 14 12160.552345210937 12160.552345210937 4510 gi|16765660|ref|NP_461275.1| putative response regulator [Salmonella typhimurium LT2] 65772.94509335083 103 216 V.(AGLGAFMSSTGVVAIFIPVVLSVSMHMQTSPSRLMMPLSF)[-17.89]AGLISGMMTLVATPPNLVVNSELLREGLHGFNFFSVTPLGVVVLALGIVYMLVMRFMLKGDAPGQQAGKRRTFR.D 1 8.0 5.0 0.1054016396901279 659.1568237084102 0.15491183879093198
/home/xiaowen/c_project/proteomics_cpp/testcases/data/st_no_digestion.msalign 1792 2526 3374 11 8 8794.4983839375 8794.4383839375 310 gi|16763548|ref|NP_459163.1| aconitate hydratase 2 [Salmonella typhimurium LT2] 94040.20024700684 438 520 L.(VMQSF)[-30.97]CHTAAYPKPVDVTTHHTLPDFIMNRGGVSLRPGDGVIHSWLNRMLLPDTVGTGGDSHTRFPIGISFPAGSGLVAFAAA.T 1 5.0 5.0 0.1348412718929694 693.6267120666524 0.1554436752674638
/home/xiaowen/c_project/proteomics_cpp/testcases/data/st_no_digestion.msalign 1801 2542 3395 15 23 18572.740966613284 18572.740966613284 3138 gi|16764966|ref|NP_460581.1| putative MDO biosynthetic protein [Salmonella typhimurium LT2] 62585.793771939694 132 295 I.HFRPELFKYNDAGVDTTQLEGQSDLGFAGFRVFKAPELARRDVVSFLGASYFRAVDDTYQYGLSARGLAIDTYTDGQEEFPDFTAFWFDTAKPGDTTFTVYALLDSASVTGAYKFVIHCEKSQVIMDVENHLYARKDIKQL(GIAPMTSMFSCGNNERRVCDTIH)[-44.27].P 1 4.0 4.0 0.08717790934795844 714.0338332440003 0.15534591194968553
/home/xiaowen/c_project/proteomics_cpp/testcases/data/st_no_digestion.msalign 818 1236 1654 18 10 6980.683852703126 6980.673852703126 4392 gi|16765601|ref|NP_461216.1| putative permease [Salmonella typhimurium LT2] 49168.76818676513 164 222 G.WIIEHLNTPDYEGWRWLFAIEGIPTVFLGILTFYLLPDSPEKAKWLTPQQIS(ALVNKLR)[44.95].T 1 4.0 4.0 0.17545539414878683 767.7353038155867 0.1565053425518542
/home/xiaowen/c_project/proteomics_cpp/testcases/data/st_no_digestion.msalign 333 733 983 12 11 7308.2254658984375 7308.230465898438 6830 gi|16766824|ref|NP_462439.1| 1,4-alpha-glucan branching enzyme [Salmonella typhimurium LT2] 84392.56437893433 310 371 T.(RRFGTR)[17.83]DDFRYFINAAHAAGLNVILDWVPGHFPSDEFSLAEFDGTHLYEHSDPREGYHQDWN.T 1 4.0 4.0 0.17000090386749006 785.2029003785187 0.157035175879397
/home/xiaowen/c_project/proteomics_cpp/testcases/data/st_no_digestion.msalign 1135 1608 2150 18 14 10818.438624132812 10818.438624132812 1530 gi|16764164|ref|NP_459779.1| putative cytoplasmic protein [Salmonella typhimurium LT2] 32720.10978527588 1 110 .(MRNRTLADLDRVVALGGGHGLGRVLSSLSSLGSRLTGIVTTT)[42.01]DNGGSTGRIRRSEGGIAWGDMRNCLNQLITEPSVASAM(FEYRFGGNG)[-913.54]ELSGHNLGNLMLKALDHLSVR.P 1 4.0 4.0 0.6713923502906496 796.8729601930129 0.15756434400502198
/home/xiaowen/c_project/proteomics_cpp/testcases/data/st_no_digestion.msalign 915 1337 1788 17 13 10158.449799488282 10158.479799488283 2616 gi|16764703|ref|NP_460318.1| flavoprotein [Salmonella typhimurium LT2] 45291.45960827392 2 330 M.SDD(KFDAIVVGAGVAGTVAAYVMAKAGLDVLVIERGNSAGSKNMTGGRLYAHSIESIMPGFATSAPIERVVTREKISFLTEESAVTLDFHRAPPTPPLTSYTVLRNKLDPWLMAQAEQAGAQFIPGVRVDALVREGNRVTGVQAGDDILDANIVILADGVNSMLGRSLDMVPVSSAHHYAVGVKELIGLSPALIEERFNLASHEGAAWLFAGAPSNGLMGGGFLYTNRDSVSLGLVCGLG)[-24284.06]DIAHATKSVPQMLEDFKQHPAIRPLIQGGTLLEYSAHMVPEGGIAMMPELANDGVMIVGDAAGLCLNLGYTVRGMDLAIASAQAAAQTA.I 1 5.0 5.0 0.05165697560805528 923.9425926910285 0.1587202007528231
/home/xiaowen/c_project/proteomics_cpp/testcases/data/st_no_digestion.msalign 1749 2422 3235 14 18 13493.094465609376 13493.204465609377 1146 gi|16763971|ref|NP_459586.1| ferric enterobactin transporter [Salmonella typhimurium LT2] 34276.10762615722 131 255 L.ALYDQLSAIAPTLVINYDDKSWQSLLTQLGEITGQEKQAAARIAEFETQLTTVKQRIALPPQPVSALVYTPAAHSANLWTPESAQGKLLTQLGFTLATLPRGLQTSKSQGKR(HDIIQLGGENLAA)[7.02].G 1 4.0 4.0 0.14428463301391722 949.5066807960526 0.15862068965517243
/home/xiaowen/c_project/proteomics_cpp/testcases/data/st_no_digestion.msalign 1719 2376 3174 13 11 11782.18021024219 11782.215210242188 8236 gi|16767531|ref|NP_463146.1| formate-dependent nitrite reductase [Salmonella typhimurium LT2] 83081.84337444825 149 251 L.WSDPFLRIFPPAMEGRDLNPMLQHLGLILHPPLLYLGYGGLMTAASVALASLLCGGFNATTAWVCWRWALPGWCALTLGII(LGSWWAYCELGWGGWWFWDPVE)[10.40].N 1 4.0 4.0 0.15636624452094114 962.9323424313294 0.15852130325814537
/home/xiaowen/c_project/proteomics_cpp/testcases/data/st_no_digestion.msalign 1161 1634 2184 36 20 12860.01013853125 12859.93013853125 7704 gi|16767264|ref|NP_462879.1| DNA polymerase I [Salmonella typhimurium LT2] 103178.60803814454 615 728 L.EELALDYPLPKVILEYRGLAKLKSTYTDKLPLMINPKTGRVHTSYHQAVTATGRLSSTDPNLQNIPVRNEEGR(RIRQAFIAPEDYLIVSADYSQIELRIMAHLSRDKGLLTAFA)[-27.93].E 1 5.0 5.0 0.15370292755697762 990.6923927874079 0.1596743894802755
/home/xiaowen/c_project/proteomics_cpp/testcases/data/st_no_digestion.msalign 1447 2000 2672 12 19 15163.594449410159 15163.599449410158 2342 gi|16764566|ref|NP_460181.1| respiratory NADH dehydrogenase 2 [Salmonella typhimurium LT2] 47589.71492596191 284 419 K.EIGGLETNRINQLVVEPTLQTTRDPDIYAIGDCASCARPEGGFVPPRAQAAHQMATCAMKNILAQMNGKPLKAYQYKDHGSLVSLSNFSTVGSLMGNLTRGSMMIEGRIARFVYISLYRMHQI(ALHGYFKTGLMML)[33.03].V 1 4.0 4.0 0.14985918255910666 1037.4751869529257 0.16020025031289112
/home/xiaowen/c_project/proteomics_cpp/testcases/data/st_no_digestion.msalign 348 748 1003 16 10 7308.234450882813 7308.329450882813 198 gi|16763492|ref|NP_459107.1| L-arabinose isomerase [Salmonella typhimurium LT2] 56198.3029691748 413 479 T.VKTPHSLPKLPVANALWKAQPDLPTASEAWILAGGAHHTVFSHALDLND(MRQFAEIHDIEIAVIDND)[-35.43].T 1 4.0 4.0 0.22882696798228155 1040.1436938099107 0.16010006253908693
/home/xiaowen/c_project/proteomics_cpp/testcases/data/st_no_digestion.msalign 1671 2299 3071 38 15 12106.034766269531 12106.034766269531 7466 gi|16767145|ref|NP_462760.1| L-glutamine/D-fructose-6-phosphate aminotransferase [Salmonella typhimurium LT2] 67063.69997997803 413 522 V.(LLMLVAKLSRLKGLDASIEHDIVHGLQALPS)[40.54]RIEQMLSQDKRIELLAEDFSDKHHALFLGRGDQYPIALEGALKLKEISYIHAEAYAAGELKHGPLALIDADMPVIVVAP.N 1 7.0 5.0 0.16891707976373396 1058.5786706359638 0.16
/home/xiaowen/c_project/proteomics_cpp/testcases/data/st_no_digestion.msalign 1810 2574 3438 11 23 19017.463109023443 19017.578109023445 3028 gi|16764910|ref|NP_460525.1| NAD-linked malate dehydrogenase [Salmonella typhimurium LT2] 63255.28268642944 237 406 Q.RWPDILLQFEDFAQKNAMPLLTRYRDEICSFNDDIQGTAAVTVGTLIAASRAAGSQLSEQKIVFLGAGSAGCGIAEQIIAQTQREGLSEDAARQNVFMVDRFGLLTDRMPNLLPF(QAKLVQKCDNLQHWDTENDVLSLLDVVRNVKPDILIGVSGQTGLFTEEIIREMHK)[-5.11].H 1 4.0 4.0 0.14510192094420576 1066.1779621931594 0.1599000624609619
/home/xiaowen/c_project/proteomics_cpp/testcases/data/st_no_digestion.msalign 320 720 966 17 12 8518.699063265627 8518.739063265628 2004 gi|16764396|ref|NP_460011.1| probable minor tail protein [Phage Gifsy-2] 21417.884752469483 54 127 N.RRQGIPVRTVRRRARVRLARADKPFANIYVNCDPLTAIRLLSSPPSTPMRGRKGKPLRIGKYRFDRGFIAQ(APN)[-5.04].G 1 4.0 4.0 0.21639906252597624 1093.9469192596114 0.16104868913857678
/home/xiaowen/c_project/proteomics_cpp/testcases/data/st_no_digestion.msalign 1125 1596 2134 19 14 9229.10549984375 9229.10549984375 5168 gi|16765991|ref|NP_461606.1| 30S ribosomal subunit protein S16 [Salmonella typhimurium LT2] 9229.012678342286 24 82 D.SRNARNGRFIERVGFFNPIASEKEEGTRLDLDRIAHWVGQGATISDRVA(ALIKEVKKAA)[2666.59]. 1 6.0 5.0 0.004673688396708501 1183.8788009520317 0.16219588271990018
/home/xiaowen/c_project/proteomics_cpp/testcases/data/st_no_digestion.msalign 776 1193 1596 38 20 12995.46907990625 12995.61407990625 76 gi|16763428|ref|NP_459043.1| putative arylsulfatase [Salmonella typhimurium LT2] 64019.08907146972 88 203 K.TAMPVEHLYTLTAGANLLPVLGLVADTENRIVFSQADTPLAVYTLITQPLPPVDSAEVVLGFPIINVTQPATDANKM(APGFYFITHFDRYNYALDQNGLVRWYVTQDYPSYNFVRI)[51.00].D 1 5.0 5.0 0.18572213087468706 1201.804573910121 0.16271820448877805
/home/xiaowen/c_project/proteomics_cpp/testcases/data/st_no_digestion.msalign 921 1344 1798 14 11 8129.320755113281 8129.300755113281 6254 gi|16766537|ref|NP_462152.1| putative inner membrane protein [Salmonella typhimurium LT2] 45637.97082729858 2 217 M.FESKINPLWQSFILA(VQEEVKPALGCTEPISLALAAAAAAAELNGTVERIDAWVSPNLMKNGMGVTVPGTGMVGLPIAAALGALGGDAKAGLEVLKDASAKAVADAKAMLAAGHVAVMLQEPCNDILFSRAKVYSGDSWACVTIVGDHTNIVRIETDKGVVFTQADNAQEEEKTSPLGVLSHTSLEEILAFVNAVP)[-14524.35]FDAIRFILDAARLNGALSQE.G 1 8.0 5.0 0.14200390435799212 1540.3098444530842 0.16635514018691588
/home/xiaowen/c_project/proteomics_cpp/testcases/data/st_no_digestion.msalign 263 663 890 21 5 2879.425442363282 2879.445442363282 8644 gi|16767740|ref|NP_463355.1| putative DNA repair ATPase [Salmonella typhimurium LT2] 139531.79764004273 1056 1079 E.RIDARIEESRQRLQEAHATSELQ(N)[30.00].S 1 4.0 4.0 0.703272693473463 1553.707592456432 0.16625155666251556
/home/xiaowen/c_project/proteomics_cpp/testcases/data/st_no_digestion.msalign 187 578 776 11 10 6348.5773128437495 6348.58231284375 2724 gi|16764757|ref|NP_460372.1| type III secretion system apparatus protein [Salmonella typhimurium LT2] 8111.42579861206 31 75 Q.LVCLALLLAGLNEPLKAAKILSDIDLPEAMALRLLF(PAPNEGFEN)[1475.93]. 1 4.0 4.0 0.014932685037373924 1595.8779193384455 0.16677037958929683
/home/xiaowen/c_project/proteomics_cpp/testcases/data/st_no_digestion.msalign 1750 2424 3238 22 17 13492.16662198047 13492.10162198047 6098 gi|16766459|ref|NP_462074.1| energy transduction protein [Salmonella typhimurium LT2] 26219.851099210206 22 144 I.(VVKCVMIG)[-27.01]LILASVVTWAIFFSKSVEFFTQKRRLKREQLQLADARSLDQASDIAAGFSAKSLSAQLINEAQNELELSQGSEDNEGIKERTGFRLERRVAAVGRYMGRGNGYLATIGAISPFVG.L 1 4.0 4.0 0.2798185203165514 1841.471911206934 0.16791044776119404
/home/xiaowen/c_project/proteomics_cpp/testcases/data/st_no_digestion.msalign 1484 2055 2746 14 25 22931.79489041797 22931.699890417967 2524 gi|16764656|ref|NP_460271.1| succinylglutamic semialdehyde dehydrogenase [Salmonella typhimurium LT2] 53269.585359769284 218 427 L.FTGSASTGYQLHRQLSGQPEKILALEMGGNNPLIIEDAANIDAAVHLTLQSAFITAGQRCTCARRLLVKQGAQGDAFLARLVDVAGRLQPGRWDDDPQPFIGGLISAQAAQHVMEAWRQREALGGRTLLAPRKVKEGTSLLTPGIIELTGVADVPDEEVFGPLLNVWRYAHFDEAIRLANNTRFGLSCGLVSTDRAQF(EQLLLEARAGIV)[49.80].N 1 4.0 4.0 0.2552493952364502 1912.323294034458 0.16842759477936606
/home/xiaowen/c_project/proteomics_cpp/testcases/data/st_no_digestion.msalign 86 462 622 17 12 11080.921000640625 11081.026000640624 7250 gi|16767035|ref|NP_462650.1| putative transport protein [Salmonella typhimurium LT2] 51091.64046688598 1 127 .(MKSEILSVKEKIGYGMGDA)[42.01]ASHIIFDNVMLYMMF(FYTDIFGIPAGFVGTMFLLARALDAISDPCMGLLADRTRSRWGKFRPWVLFGALPFGI)[-3192.29]VCVLAYSTPDLSLNGKMIYAAITYTLLTLLYTVVN.I 1 4.0 4.0 0.4633040026299445 1984.6311990649988 0.168944099378882
/home/xiaowen/c_project/proteomics_cpp/testcases/data/st_no_digestion.msalign 1113 1573 2103 11 14 10088.13816116406 10088.148161164061 66 gi|16763423|ref|NP_459038.1| putative 5'-nucleotidase [Salmonella typhimurium LT2] 57258.33881207031 381 470 G.IRTELPKGNITYGDVLSMYPFTNDVMSMEISGKDLKSIMSHAADLKNGMLHVSKT(VQFKYDSTKPLGQRIVEFDIKGKPVEDNKLYTVAL)[-15.06].D 1 4.0 4.0 0.3836454396129783 2161.949728666743 0.1707014276846679
/home/xiaowen/c_project/proteomics_cpp/testcases/data/st_no_digestion.msalign 1355 1874 2504 15 20 15774.596999140627 15774.541999140627 2524 gi|16764656|ref|NP_460271.1| succinylglutamic semialdehyde dehydrogenase [Salmonella typhimurium LT2] 53269.585359769284 62 208 R.QAIVEKFAALLEAHKAELTEVIARETGKPRWEAATEVTAMINKIAISIKAYHARTGAQKSELVDGAATLRHRPHGVLAVFGPYNFPGHLPNGHIVPALLAGNTLIFKPSELTPWTGETVIKLWERAGLPAGVLNLVQGGR(ETGQALS)[26.05].S 1 4.0 4.0 0.3171184820921867 2226.584321999337 0.1705955334987593
/home/xiaowen/c_project/proteomics_cpp/testcases/data/st_no_digestion.msalign 1591 2205 2946 43 16 11546.297350624998 11546.392350624998 1844 gi|16764318|ref|NP_459933.1| cytochrome-related transporter [Salmonella typhimurium LT2] 64893.23445721191 431 537 Q.NPQLPAATLRENVLLARPDASEQELYAALDAAWVSEFLPLLPQGVDTPLGNHASRLSVGQAQRVAVARALLNPCQLLLLDEPAASLDAHSEQRVMQALK(AASKRQTT)[7.31].L 1 5.0 5.0 0.39536831279056234 2407.1220733727587 0.17110973341599503
/home/xiaowen/c_project/proteomics_cpp/testcases/data/st_no_digestion.msalign 2008 3168 4230 14 17 13357.677391167968 13357.54239116797 1382 gi|16764089|ref|NP_459704.1| putative UDP-galactopyranose mutase [Salmonella typhimurium LT2] 44880.286600308835 222 329 Q.(EMR)[26.41]TNYDHVFFSGALDAFYSCQYGRLEYRTLDFKKIICQSDYQGCAVMNYCSIDTPYTRITEHKYFSPWERHEASICYQEYSRECEAGDIPYYPVRRADKMDLLNKYL.S 1 4.0 4.0 0.3734563450339227 2448.7560869087174 0.17100371747211895
/home/xiaowen/c_project/proteomics_cpp/testcases/data/st_no_digestion.msalign 1137 1610 2152 15 14 10818.438624132812 10818.508624132812 558 gi|16763672|ref|NP_459287.1| putative cytoplasmic protein [Salmonella typhimurium LT2] 79813.63202114624 64 173 L.VKAAVAAAQAAAAAGMAQDAVSAIVSAVAGGPGAHNVTVSGSAVPPGALLFASLDGGETLSELFSYVVQLKTPDTLNLGYVSPAANLPLKPMVGKDLCVNIE(LDGGGKRH)[.88].I 1 4.0 4.0 0.4493761945848568 2638.268325449278 0.1721362229102167
/home/xiaowen/c_project/proteomics_cpp/testcases/data/st_no_digestion.msalign 1918 2807 3748 15 19 15861.200210812502 15861.050210812502 2354 gi|39546312|ref|NP_460187.2| integral membrane protein [Salmonella typhimurium LT2] 43252.88560314697 1 354 .MYQPVALFIGLRYMRGRAADRFGRFVSWLSTIGITL(GVMALVTVLSVMNGFERELQNNILGLMPQAILSAEHGSLNPNQMPEKAVNLQGVNRIAPLTTGDVVLQSARSVAVGVMLGIDPAQKDPLTPYLVNVKQSELQPGKYNVILGEQLAGQLGVNRGDQIRLMVPSASQFTPMGRLPSQRLFTVIGTFAANSEVDGYEMLVNIQDASRLMRYPAGNITGWRLWLDEPLQVDTLSQQTLPQGTKWQ)[-22607.16]DWRERKGELFQAVRMEKNMMGLLLSLIVAVAAFNIITSLGLMVMEKQGEVAILQTQGLTPRQIMMVFMVQGASAGIIGALLGAALGALLASQLNNLMPIIGAFLDGA.A 1 4.0 4.0 0.09091423422376735 2669.794297029156 0.17202970297029702
/home/xiaowen/c_project/proteomics_cpp/testcases/data/st_no_digestion.msalign 334 734 984 11 14 7210.267976953127 7210.267976953127 400 gi|16763593|ref|NP_459208.1| putative chlorine transport protein [Salmonella typhimurium LT2] 50676.2064268164 1 137 .(MKTDTST)[42.01](FLAQQIVRLRRRDQIRRLMQRDKTPLAILFMAAVVGTLTGLVGVAFEKAVSWVQNMRIGALVQVADHAFLLWPLAFILSALLAMVGYFLVRKFAPEAGGSGIPEIEGALEELRPVRWWRV)[-8101.12]LPVKFIGGMG.T 1 6.0 4.0 0.41139324600881133 2945.855524153568 0.1725417439703154
/home/xiaowen/c_project/proteomics_cpp/testcases/data/st_no_digestion.msalign 1572 2167 2895 14 8 9646.793600500001 9646.793600500001 4618 gi|16765714|ref|NP_461329.1| phosphohistidine phosphatase [Salmonella typhimurium LT2] 17621.74665661377 68 157 M.NLPAQVDVLPELTPCGDVGLVSAYLQALANEEIGSVLVISHLPLVGYLVSELCPGETPPMFTTSAIANVTLDESGKGTFNWQMS(PCNLKM)[-36.01].A 1 5.0 4.0 0.5541725643047316 3024.910247346738 0.173053152039555
/home/xiaowen/c_project/proteomics_cpp/testcases/data/st_no_digestion.msalign 2012 3173 4236 32 30 19015.109686789063 19015.109686789063 3138 gi|16764966|ref|NP_460581.1| putative MDO biosynthetic protein [Salmonella typhimurium LT2] 62585.793771939694 1 244 .MNRRRFIKGSM(AMAAVCGSSGIASLFSQAAFAAESDIADGKIVRFDFAGLQSMAQALAKKPWGGAPGPLPDTLANLTPQAYNSIQYDAAHSLWNGVANRQLDIQFFHVGMGFRRRVRMFSVDTTTHLAREIHFRPELFK)[-7840.15]YNDAGVDTTQLEGQSDLGFAGFRVFKAPELARRDVVSFLGASYFRAVDDTYQYGLSARGLAIDTYTDGQEEFPDFTAFWFDTAKPGDTTFTVYALLDSASVTGAY.K 1 5.0 5.0 0.23321702941367883 3447.1657668122575 0.17356392835083384
/home/xiaowen/c_project/proteomics_cpp/testcases/data/st_no_digestion.msalign 1979 3135 4186 11 15 11757.445072554687 11757.445072554687 2264 gi|16764527|ref|NP_460142.1| putative FlgK/FlgL export chaperone [Salmonella typhimurium LT2] 15979.139547543946 2 140 M.(TRLSEILDQMTT)[42.01](VLNDLKTVMDAEQQQLSVGQINGSQLQRITEEKSSLLATLDYLEQQRRLEQNAQRSANDDIAER)[-4264.90]WQAITEKTQHLRDLNQHNGWLLEGQIERNQQALEVLKPHQEPTLYGADGQTSVSHRGGK(KISI)[132.24]. 2 5.0 5.0 2.401762625179206 3482.3520281902606 0.1734567901234568
/home/xiaowen/c_project/proteomics_cpp/testcases/data/st_no_digestion.msalign 112 497 668 34 8 11107.9230464375 11107.9330464375 5612 gi|16766217|ref|NP_461832.1| putative permease [Salmonella typhimurium LT2] 43853.649309354245 22 132 N.LFIASVAFPAMSVDLHTSISALAWVSNGYIAGLTLIVPFSAFLSRYLGARRLIIFSLILFSVAAAAAGFADSLHSLVFWRIVQGAGGGLLIP(VGQALTWQQFK)[-673.47]PHERAGVS.S 1 6.0 6.0 0.04805648725504306 3531.3009414939174 0.17334978408389884
/home/xiaowen/c_project/proteomics_cpp/testcases/data/st_no_digestion.msalign 1970 3114 4158 21 16 11758.483817062499 11758.483817062499 4810 gi|16765810|ref|NP_461425.1| gcv operon transcriptional repressor [Salmonella typhimurium LT2] 23319.840135770264 34 139 I.TALGADRPGIVNTITRHVSSCGCNIEDSRLAMLGDEFTFIMLLSGTWNAITLIESTLPLKGAELDLLIVMKRTSDRPRPAMPATVWVQVEVADSP(HLIERFTALFN)[12.43].S 1 4.0 4.0 0.5788591088282294 3567.9538487911645 0.17324290998766953
/home/xiaowen/c_project/proteomics_cpp/testcases/data/st_no_digestion.msalign 1407 1949 2604 22 18 14955.365140109376 14955.470140109375 4558 gi|16765684|ref|NP_461299.1| putative amino acid transporter [Salmonella typhimurium LT2] 51959.74680538696 14 148 E.(GGLRRNLKKRHLLMMSLGGTIGTGLFIGI)[44.90]AEPLSSVGPAGTLLAYLFAGTIMLATMMCLGELSCAFPHSGSFQHYALMFMPSPCWSYTIGWLYWFSWVFSLAADLTAAGFIAHQFFPAVPVYMFCLAILLILTAI.N 1 4.0 4.0 0.5532026004371778 3801.0382789215255 0.17313616759088107
/home/xiaowen/c_project/proteomics_cpp/testcases/data/st_no_digestion.msalign 1335 1845 2466 10 17 14917.138490355472 14916.968490355472 6 gi|16763394|ref|NP_459009.1| threonine synthase [Salmonella typhimurium LT2] 47186.3123151831 265 428 L.PVKRFIAATNVNDTVPRFLHDGKWAPKA(TQATLSNAMD)[-54.89]VSQPNNWPRVEELFRRKIWRLTELGYAAVDDTTTQQTMRELKAKGYISEPHAAVAYR(ALRDQLNPGEYGLFLGTAHPAKFKESVESILGETLALPEALA)[-3437.75]ERADLPLLSHHLPADFAALRKLMMTRQ. 2 6.0 6.0 0.023218400345070403 4439.492407188175 0.17364532019704434
/home/xiaowen/c_project/proteomics_cpp/testcases/data/st_no_digestion.msalign 1748 2421 3234 18 28 22071.015050671875 22071.025050671873 4256 gi|16765534|ref|NP_461149.1| fructose-specific transport protein [Salmonella typhimurium LT2] 57679.74790783447 340 554 P.QSMEALKPILIIPLISSLVVGLAMIYLIGKPVAGILEGLTHWLQTMGTVNAVLLGAILGGMMCTDMGGPVNKAAYAFGVGLLSTQTYAPMAAIMAAGMVPPLALGLATMVARRKFDKAQQEGGKAALVLGLCFITEGAIPFAARDPMRVLPCCIVGGALTGAISMAVGAKLMA(PHGGLFVLLIPGAITPVLGYLLAIVAGTLVAGLAYAVLKRPE)[-22.94].T 1 4.0 4.0 0.5987878326940168 4490.367537844074 0.17353846153846153
/home/xiaowen/c_project/proteomics_cpp/testcases/data/st_no_digestion.msalign 192 587 788 47 13 6348.587162089844 6348.587162089844 6246 gi|16766533|ref|NP_462148.1| putative inner membrane protein [Salmonella typhimurium LT2] 14198.568208890381 8 63 V.(LKNYLG)[.12]FGGRARRKEYWMFILVNIIFTFVLGLLDAMLGWQRAGGEGVLTTIYGVLI.F 1 4.0 4.0 1.249094751540934 5208.180323119653 0.17343173431734318
/home/xiaowen/c_project/proteomics_cpp/testcases/data/st_no_digestion.msalign 1579 2181 2914 20 23 18173.851666316405 18173.856666316406 168 gi|16763476|ref|NP_459091.1| glutathione-regulated K+ efflux antiporter [Salmonella typhimurium LT2] 67181.89406796021 13 186 Y.LGSAALIVPIAVRLGLGSVLGYLIAGCIIGPWGLRLVTDAESILHFAEIGVVLMLFVIGLELDPQRLWKLRASVFGGGALQMGVCGGLIGLFCMFLGLRWQVAELIGMTLALSSTAIAMQAMNERNLTVSQVGRSAFAVLLFQDIAAIPLVAMIPLLAASG(ASTTLGAFALSAL)[-24.04].K 1 4.0 4.0 0.7953471557113921 5786.214071227499 0.17455439459127228
/home/xiaowen/c_project/proteomics_cpp/testcases/data/st_no_digestion.msalign 574 981 1314 55 6 4958.549429867187 4958.574429867187 8714 gi|16767774|ref|NP_463389.1| putative cobalamin biosynthetic protein [Salmonella typhimurium LT2] 35871.2901403479 121 166 R.YLLDGVIALVDAVHANEQMNQFTIAQSQIGYADRILLTK(TDVAGDS)[-17.95].E 1 4.0 4.0 1.7057392747272375 5828.078355452203 0.17444717444717445
/home/xiaowen/c_project/proteomics_cpp/testcases/data/st_no_digestion.msalign 1275 1766 2360 18 19 14043.622641105472 14043.55264110547 852 gi|16763823|ref|NP_459438.1| cytochrome o ubiquinol oxidase subunit I [Salmonella typhimurium LT2] 74460.32880993409 27 151 V.(GGLAI)[31.15]LAAITYFGKWTYLWKEWLTSVDHKRLGIMYIIVAIVMLLRGFADAIMMRSQQALASAGEAGFLPPHHYDQIFTAHGVIMIFFVAMPFVIGLMNLVVPLQIGARDVAFPFLNNLSFWFTVV.G 1 4.0 4.0 0.9019275761879474 6014.339383722043 0.17434008594229589
/home/xiaowen/c_project/proteomics_cpp/testcases/data/st_no_digestion.msalign 814 1231 1647 31 15 9615.285108933593 9615.410108933593 3568 gi|16765185|ref|NP_460800.1| heat shock protein [Salmonella typhimurium LT2] 31915.606332974854 43 131 F.GFGGSFISLLMSKWMALKSVGGEVIEQPRNERE(RWLMNTVATQARQAGIAMPQVAIYHAPDINAFATGARRDASLVAVSTGLLQNMSPD)[16.54].E 1 4.0 4.0 1.1031363828269796 6028.5102913626515 0.17423312883435582
/home/xiaowen/c_project/proteomics_cpp/testcases/data/st_no_digestion.msalign 218 615 826 21 12 6348.579606546878 6348.504606546878 4128 gi|16765469|ref|NP_461084.1| putative diacylglycerol kinase [Salmonella typhimurium LT2] 32293.470377164307 53 119 E.ARRLGVETVIAGG(GDGTINE)[-230.10]VSTALIQIRDGVAPALGLLPLGTANDFATSAGIPEALDKALKLAIAG.N 1 4.0 4.0 0.347785341413182 6324.827336430383 0.1747394236664623
/home/xiaowen/c_project/proteomics_cpp/testcases/data/st_no_digestion.msalign 2011 3172 4235 22 18 13358.696543390624 13358.696543390624 1244 gi|16764020|ref|NP_459635.1| alpha ribazole-5'-P phosphatase [Salmonella typhimurium LT2] 23393.750612454834 70 183 R.DVPQHILPELNEMYFGDWEMRHHRDLTHEDAESYAAWCTDWQNAVPTNGEGFQAFTRRVERFISRLDAFSDCQNLLIVSHQGVLSLLIARLLTMPA(ASLWHFRVEQGCWSAIDI)[-47.78].C 1 4.0 4.0 0.886737020107084 6848.7853234933455 0.17524509803921567
/home/xiaowen/c_project/proteomics_cpp/testcases/data/st_no_digestion.msalign 145 532 715 43 11 6265.608503992187 6265.553503992187 8466 gi|16767646|ref|NP_463261.1| putative cationic amino acid transporter [Salmonella typhimurium LT2] 35220.32915325683 11 66 L.(AGLMWGLI)[-10.96]FVGPLIVPDYPALLQSMGRYLALGLIALPIAWLGRTRLRQLTRKDWST.A 1 5.0 4.0 1.986775245373446 8005.420763108767 0.17513778322106552
/home/xiaowen/c_project/proteomics_cpp/testcases/data/st_no_digestion.msalign 1473 2030 2712 36 18 15163.608744453126 15163.723744453126 8262 gi|16767544|ref|NP_463159.1| putative putrescine/ornithine transport protein [Salmonella typhimurium LT2] 47357.90213604492 222 370 K.RNVPIATIGGVLIAAVCYVLSTTAIMGMIPNAALRVSASPFGDAARMALGDTAGAIVSFCAAAGCLGSLGGWTLLAGQTAKAAADDGLFPPIFARVNKAGTPVAGLLIVGVLMTI(FQFSSMSPNAAKEFGLVSSVSVIFTLVPYLYTCA)[-29.18].A 1 4.0 4.0 2.0103603476504714 13808.301575924408 0.1762545899632803
/home/xiaowen/c_project/proteomics_cpp/testcases/data/st_no_digestion.msalign 1587 2197 2935 26 38 29543.271731632813 29543.271731632813 1822 gi|16764307|ref|NP_459922.1| ATP-binding subunit of serine protease [Salmonella typhimurium LT2] 84155.8515340857 467 734 A.(IEALTEAIKMSRAGLGHEHKPVGSFLFAGPTGVGKTEVTVQLSKALGIELLRFDMSEYMERHTVSRLIGAPPGYVGFDQGGLLTDAVIKHPHAVLLLDEIEKAHPDVFNLLLQVMDNGTLTDNNGRKADFRNVVLVMTTNAGVRETERKSIGLIHQ)[-15.11]DNSTDAMGEIKKVFTPEFRNRLDNIIWFDHLSGEVIHQVVDKFIVELQAQLDQKGVSLEVSQEARDWLAEKGYDRAMGARPMARVIQDNLKKPLANELLFGSLVDGGQVTVA.L 1 4.0 4.0 2.1305037512088685 15098.89188031637 0.1761467889908257
/home/xiaowen/c_project/proteomics_cpp/testcases/data/st_no_digestion.msalign 1358 1885 2519 21 19 14918.091650757817 14918.086650757818 6652 gi|16766735|ref|NP_462350.1| protein chain elongation factor EF-G [Salmonella typhimurium LT2] 77721.5418188147 235 663 M.EKYLGGEELTEEEIKQALRQRVLNNEIILVTCGSAFKNKGVQAMLDAVIDYLPSPVDVPAINGILDDGKDTPAERHASDDEP(FSALAFKIATDPFVGNLTFFRVYSGVVNSGDTVLNSVKTARERFGRIVQMHANKREEIKEVRAGDIAAAIGLKDVTTGDTLCDPENPIILERMEFPEPVISIAVEPKTKADQEKMGLALGRLAKEDPSFRVWTDEESNQTIIAGMGELHLDIIVDRMKREFNVEANVGKPQVAYREAIRAKVTDIEGKHAKQSGGRGQYGHVVIDMYPLEPGSNPKGYEFINDIKGGVIPGEYIPAVDKGIQEQLKSGPLAGYPVVDLGVRLHFGSYHDVDSSELAFKLAASIAFKEGFKKAKPVLLEPIMKVEVETPEENTGDVI)[-32189.18]GDLSRRRGMLKGQESEVTGVKIHAEVPLSEM.F 1 6.0 6.0 0.008262523174053937 18656.864883360213 0.17665036674816625
/home/xiaowen/c_project/proteomics_cpp/testcases/data/st_no_digestion.msalign 1954 3080 4112 12 15 16293.87653346875 16294.02153346875 1156 gi|16763976|ref|NP_459591.1| hypothetical protein STM0599 [Salmonella typhimurium LT2] 15214.566209989014 1 127 .(MIWKRHL)[2125.96]TLDELNATSQNTLVAHLGIVYTRLGDDVLEAEMPVDARTHQPFGLLHGGASAALAETLGSMAGYLMTRDGQCVVGTELNATHHRAISQGKVRGVCLPLHLGRQNQSWEITLFDEQGRRCC.T 1 4.0 4.0 0.08254626790821479 22244.443079179982 0.17654245571166768
/home/xiaowen/c_project/proteomics_cpp/testcases/data/st_no_digestion.msalign 1948 3070 4099 10 8 8899.336244562499 8899.4562445625 3092 gi|16764942|ref|NP_460557.1| putative regulatory protein [Salmonella typhimurium LT2] 53423.67757626098 1 474 .(MKKYQRLAEQIREQIASGVWQPGDRLPSLREQV)[42.01](ASSGMSFMTVGHAYQLLESQGRIIARPQSGYYVAPHPVCRSVATAAHVIRDEAVDINTYIFEMLQASRDTSVVPFASAFPDPRLFPLPQLNRSLAQVSKTATAMSVIENLPPGNAELRYAIARRYAQQGITVSPDEIVITAGALEALNLSLQAVTAPGDWVVVENPCFYGALQALERLRLKALSIPTDVKEGIDLMALEQALQEYPVKACWLMTNSQNPL)[-22649.03]G(FTLSAEKKARLVALLTHHNVTLIEDDVYSELYFGREKPLPAKAWDRDDTVLHCSSFSKCLVPGFRIGWVAGGSHARQIQRLQLMSTLSTSSPMQLALVDYLSTRRYDAHLRRLRRQLAERKQQAWQTLLRHLPAEVKIHHNDSGYFLWLELPEQLDAGELSAKALEHLISIAPGKMFSTSGAWTRFFRFNTAWHWGEREEQ)[-21917.20]AVKQLGSLIREMLSAKSLV. 2 4.0 4.0 21.440480862704565 145751.0511485173 0.17887667887667888
/home/xiaowen/c_project/proteomics_cpp/testcases/data/st_no_digestion.msalign 1336 1849 2471 15 19 14918.128760132817 14918.128760132817 5448 gi|16766133|ref|NP_461748.1| alanyl-tRNA synthetase [Salmonella typhimurium LT2] 96181.70944805664 730 876 G.(DKVRAVLERTRQLEKELQQLKDQAAAQESANLSSKAVDLNGVKLLVSELAGIEPK)[-33.42]MLRTMVDDLKNQLGSTVIVLATVVEGKVSLIAGVSKDVTDRVKAGELIGMVAQQVGGKGGGRPDMAQAGGTD(AAALPAALASVQ)[-296.69]GWVSAKLQ. 2 5.0 5.0 8.556920153624247 163737.24236657808 0.17876754118364857
/home/xiaowen/c_project/proteomics_cpp/testcases/data/st_no_digestion.msalign 1849 2636 3520 12 17 12159.541625609378 12159.541625609378 596 gi|16763692|ref|NP_459307.1| putative acyl-CoA dehydrogenase [Salmonella typhimurium LT2] 89615.8647748999 1 814 .(MMILSI)[42.01](IATVVLLGALFYHRVSLFLSSLILLAWTAALGVAGLWSIWLLVPLAIILVPFNLTPMRKSMISAPVFRGFRKVMPPMSRTEKEAIDAGTTWWEGDLFQGKPDWKKLHNYPQPQLTAEEQAFLDGPVEEACRMANDFQITHELADLPPELWAYLKEHRFFAMIIKKEYGGLEFSAYAQSRVLQKLSGVSGILAITVGVPNSLGPGELLQHYGTEEQKNHYLPRLARGQEIPCFALTSPEAGSDAGAIPDTGVVCMGEWQGQQVLGMRLTWNKRYITLAPIATVLGLAFKLSDPDRLLGGEEELGITCALIPTSTPGVEIGRRHFPLNVPFQNGPTRGNDIFVPIDYIIGGPKMAGQGWRMLVECLSVGRGITLPSNSTGGVKSVALATGAYAHIRRQFKISIGKMEGIEEPLARIAGNAYVMDAAASLITYGIMLGEKPAVLSAIVKYHCTHRGQQSIIDAMDITGGKGIMLGESNFLARAYQGAPIAITVEGANILTRSMMIFGQGAIRCHPYVLEEMAAAQNNDVNAFDKLLFKHIGHVGSNTVRSFWLGLTRGLTSHTPTGDATKRYYQHLNRLSANLALLSDVSMAVLGGSLKRR)[-63167.80]ERISARLG(DVLSQLYLASAVLKRYDDEGRHEADLPLVHWGVQDALYRAEQAMDDLLQNFPNRVVAGLLTAMIFPTGRHYLAPSDKLDHAVAKILQVPNATRSRIGRGQYLTPAEHNPVGLLEEALRDVIAADPIHQRICKELGKNLPFTRLDELARNALAKGLIDKDEAAILAK)[-14330.53]AEESRLRSINVDDFEPEALATKPVKLPEKVRKVEAA. 2 4.0 4.0 21.608503131015127 197146.21206028818 0.17926829268292682
/home/xiaowen/c_project/proteomics_cpp/testcases/data/st_no_digestion.msalign 1493 2067 2762 15 9 8374.314065914063 8374.314065914063 8852 gi|17233405|ref|NP_490494.1| putative phospholipase D [Salmonella typhimurium LT2] 15925.18680782837 26 102 Q.(RKQLVLKT)[8.40]IEAAQHNIRLMEYSFTSPEVAGALISAKRRGVDVRGGGLDWKANTGKNNNASRV(TMNLLTSAGIPVRTV)[21.41].S 2 5.0 5.0 0.6719308291792205 336718.5278678531 0.18159658744667886
/home/xiaowen/c_project/proteomics_cpp/testcases/data/st_no_digestion.msalign 813 1230 1646 17 16 9617.309632249999 9617.444632249999 8560 gi|16767698|ref|NP_463313.1| anaerobic ribonucleoside-triphosphate reductase [Salmonella typhimurium LT2] 80820.45850964112 1 712 .(MTPHVMKRDGCK)[-41.07]VPFKSERIKEAILRAAKAAGVDDADYC(ATVAEVVSSQMNARSQVDINEIQTAVENQLMSGPYKQLARAYIEYRHDRDIQREKRGRLNQEIRGLVEQTNSALLNENANKDSKVIPTQRDLLAGIVAKHYARQHLLPRDVVQAHERGDIHYHDLDYSPFFPMFNCMLIDLKGMLTQGFKMGNAEIEPPKSISTATAVTAQIIAQVASHIYGGTTINRIDEVLAPFVTESYNKHRKTADEWQIPDAEGYARSRTEKECYDAFQSLEYEVNTLHTANGQTPFVTFGFGLGTSWESRLIQASILRNRIAGLGKNRKTAVFPKLVFAIRDGLNHKFGDPNYDIKQLALECASKRMYPDILNYDQVVKVTGSFKTPMGCRSFLGVWENENGEQIHDGRNNLGVISLNLPRIALEAKGDETAFWKLLDERLALARKALMTRIARLEGVKARVAPILYMEGACGVRLKADDDVSEIFKNGRASISLGYIGIHETINALFGGEHLYDSEQLRAKGIAIVERLRQAVDQWKDETGYGFSLYSTPSENLCDRFCRLDTAEFGVVPGVTDKGYYTNSFHLDVEKKVNPYDKIDFEAPYPPLANGGFICYGEYPNIQHNLKALEDVWDYSYQHVPYYGTNTPIDECYECGFTGEFECTSKGFTCPKCGNHDAARVSVTRRVCGYLGSPDARPFNAG)[-71161.94]KQEEVKRRVKHLGNGQIG. 2 4.0 4.0 66.49018749720913 481732.73457505123 0.182095006090134
/home/xiaowen/c_project/proteomics_cpp/testcases/data/st_no_digestion.msalign 1802 2546 3400 17 45 34819.851787949214 34819.851787949214 596 gi|16763692|ref|NP_459307.1| putative acyl-CoA dehydrogenase [Salmonella typhimurium LT2] 89615.8647748999 504 814 T.(RSMMIFGQGAIRCHPYVLEEMAAAQNNDVNAFDKLLFKHIGHVGSNTVRSFWLGLTRGLTSHTPTGDATKRYYQHLNRLSANLALLSDVSMAVLGGSLKRRERISARLGDVLSQLYLASA)[8.60]VLKRYDDEGRHEADLPLVHWGVQDALYRAEQAMDDLLQNFPNRVVAGLLTAMIFPTGRHYLAPSDKLDHAVAKILQVPNATRSRIGRGQYLTPAEHNPVGLLEEALRDVIAADPIHQRICKELGKNLPFTRLDELARNALAKGLID(KDEAAILAKAEESRLRSINVDDFEPEALATKPVKLPEKVRKVEAA)[198.02]. 2 4.0 4.0 61.04872177835726 714377.623157388 0.18381010346926355
/home/xiaowen/c_project/proteomics_cpp/testcases/data/st_no_digestion.msalign 1059 1500 2006 20 17 11759.500100632815 11759.480100632814 1370 gi|16764083|ref|NP_459698.1| putative carboxylase [Salmonella typhimurium LT2] 34665.68007488769 2 310 M.LNI(IRAGIYTS)[1599.04]VQDSGRHGFRQSGLSHCGALD(KPAFQTANLLVGNDANAPALEITLGQLVVEFENETWFALTGAGCEAQLDDQPVWTGWRLPVKAGQRLTLHRPLHGMRSYLAVAGGIAVPEVMGSYSTDLKSGIGGLEGRLLKDGDRLATGKPSRQFSGPQGVKQLLWGNRIRALPGPEYREFDRASQEAFWRSPWQLSPQSNRMGYRLQGQSLTRTTDRELLSHGLLPGVVQVPYNGQPIVLMNDAQTTGGYPRIACIIE)[-24374.20]ADMYHLAQIPLGQPIHFVQCSLEEALNARRERQRYLEQLTWRLQHEH. 2 4.0 4.0 145.01967906858155 749692.6804270814 0.18369829683698297
/home/xiaowen/c_project/proteomics_cpp/testcases/data/st_no_digestion.msalign 917 1339 1791 17 13 12201.894817289065 12201.794817289065 332 gi|16763559|ref|NP_459174.1| glucose dehydrogenase [Salmonella typhimurium LT2] 86839.07567806763 685 796 W.(KKRIGTPRDSMPFPMPVPV)[-13.77]PFNMGMPMLGGPISTAGNVLFIAATADNYLRAYNMSNGEKLWQGRLPAGGQATPMTYEVNGKQYVVVSAGGHGSFG(TKMGDYIVAYALPDDAK)[295.66]. 2 5.0 4.0 70.08585884572072 896065.681939933 0.18419452887537993
/home/xiaowen/c_project/proteomics_cpp/testcases/data/st_no_digestion.msalign 1488 2060 2752 14 29 22097.332733843752 22097.622733843753 6178 gi|16766499|ref|NP_462114.1| putative membrane protein [Salmonella typhimurium LT2] 61429.18839092773 2 559 M.DDVFGILPSWMFTAIVAVIVLLIIGIIFARLYRRASAEQAFVRTGLGGQKVVMSGGAIVMPIFHEIIPIN(MNTLKLEVSRATVDSLITKDRMRVDVVVAFFVRVKPSVEGIATAAQTLGQRTLSPEDLRMLVEDKFVDALRATAAQMTMHELQDTRENFVQGVQNTVAEDLSKNGLELESVSLTNFNQTSKEHFNPNNAFDAEGLTKLTQETERRRRERNEVEQDVEVAVR)[-16075.23]EKNRDALERKLEIEQQEAFMTLEQEQQVKTRTAEQNAKIAA(FEAERHREAEQTRILAERQIQETEIEREQAVRSRKVEAEREVRIKEIEQQQVTEIANQTKSIAIAAKSEQQSQAEARANDALADAVRAQQNVETTRQTAEADRAKQVALIAAAQDAETKAVELTVRAKAEKEAAELQAAAIIELAEATRKKGLAEAEAQRALNDAINVLSDEQTSLKFKLALLQSLPAVIEKSVEPMKSIDGIKIIQVDG)[-23125.30]LNRGATAGDVAAGGANGGNLAEQALSAALTYRTQAPLIDSLLNEIGIAGGSLKALTTPLVSSATDEINREATIKEQ. 2 4.0 4.0 59.39423780793477 977520.1498826868 0.18408262454434993
/home/xiaowen/c_project/proteomics_cpp/testcases/data/st_no_digestion.msalign 578 986 1320 20 5 3091.435641234376 3091.4406412343756 5772 gi|16766296|ref|NP_461911.1| exonuclease V beta chain [Salmonella typhimurium LT2] 134412.3427564673 1075 1101 G.(RYYLLD)[-11.00]YKSNWLGEDSAAY(TQTAMAAA)[31.01].M 2 6.0 5.0 5.108805820128757 1164324.2938561083 0.18397085610200364
/home/xiaowen/c_project/proteomics_cpp/testcases/data/st_no_digestion.msalign 1508 2091 2794 13 24 21759.27550771875 21759.10050771875 512 gi|16763649|ref|NP_459264.1| putative cytoplasmic protein [Salmonella typhimurium LT2] 37223.95026226562 133 331 G.(GLDKPEHDRFAFYIASLSGQDLRESAESPLSDHVRLAASAHLVRESRNPDGLAATLAHYFSVPFAVKEFALHWITVANDEI)[19.77]TRLGTPAQSS(VL)[-210.96]GNGALIGQAVPDMQYKFRLIIGPLTLEDYLRFLPGGNNLPVLTELVRTFIGFEYCWEIELQLKPHAAPPAVIGGAQRLGWTAWAGKAMHDRPVTGMIFEPEHGLTH. 2 4.0 4.0 85.44606946224664 1176988.9350383722 0.18385922330097088
/home/xiaowen/c_project/proteomics_cpp/testcases/data/st_no_digestion.msalign 1065 1507 2015 28 18 11759.49966057031 11759.42466057031 4046 gi|16765429|ref|NP_461044.1| putative colanic acid biosynthetic protein [Salmonella typhimurium LT2] 51268.41045208496 1 467 .(MPATKFSRRTLLTAGSALAVLPFLRALPVQAREPRETVDIKDYPADDGI)[42.01](ASFKQAFADGQTVVVPPGWVCENINAAITIPAGKTLRVQGAVRGNGRGRFILQDGCQVVGEQGGSLHNVTLDVRGSDCVIKGVAMSGFGPVAQIFIGGKEPQVMRNLIIDDITVTHANYAILRQGFHNQMDGARITHSRFSDLQGDAIEWNVAIHDRDILISDHVIERINCTNGKINWGIGIGLAGSTYDNSYPEDQAVKNFVVANITGSDCRQLVHVENGKHFVIRNVKAKNITPGFSKNAGIDNATIAIYGCDNFVIDNIDMTNSAGMLIGYGVVKGKYLSIPQNFKLNAIRLDNRQVAYKLRGIQISSGNTPSFVAITNVRMTRATLELHNQPQHLFLRNINVMQTSAI)[-38496.62]GPALKMHFDLRKD(VRGQFMARQDTLLSLANVHAINENGQSSVDIDRINHQTVN)[-1054.38]VEAVNFSLPKRGG. 2 4.0 4.0 143.45401294257337 1270315.1513537322 0.18435415403274713
/home/xiaowen/c_project/proteomics_cpp/testcases/data/st_no_digestion.msalign 2013 3175 4239 15 27 13358.69230816992 13358.597308169921 8458 gi|16767642|ref|NP_463257.1| putative cell envelope opacity-associated protein A [Salmonella typhimurium LT2] 23141.857954221192 53 174 E.(TSDSPVVTRE)[54.53]AQLDLQSQSQPPTEAQLQAQLVAPQNDPDQVAPVAPEPIQEGQPEEQNQPQTQPFQQDSGIGQQWRSYRVESGKTLAQLFRDHGLPPTDVYAMAQVEGAGKPLS(NLKNGQMI)[-16.49].K 2 5.0 5.0 1.9544425084273733 1281465.8791453398 0.18424242424242424
/home/xiaowen/c_project/proteomics_cpp/testcases/data/st_no_digestion.msalign 1811 2578 3443 22 22 19016.455370375006 19016.455370375006 1784 gi|16764288|ref|NP_459903.1| putative minor tail protein [Phage Fels-1] 79116.62779827637 374 563 D.(SEALASTPKAVKTVMGEVQTKAPLDSPALTGTPTAPTPETTAAGIEIATAAFVAAKVAQLVGSA)[-32.15]PEALDTLKELADALGNDPNFATTVLNKLAGKQPLDDTLTALSGKSVDGLIEYIGLRNTIDKAAGALPAGGTAVAANRLVSRGALPALTGTTRGSD(SGLIMGEVYNNGYPTQYGNILRLTGTGDGEI)[12.65].L 2 7.0 6.0 1.97817886308854 1453591.1400989788 0.18413082980012113
/home/xiaowen/c_project/proteomics_cpp/testcases/data/st_no_digestion.msalign 214 611 820 18 4 3176.0649885468747 3176.0649885468747 5676 gi|16766249|ref|NP_461864.1| putative cytoplasmic protein [Salmonella typhimurium LT2] 59013.74181957763 479 505 T.(NP)[16.98]YESSDLERIMTARKKY(FTTSAEKQS)[-20.48].A 2 5.0 5.0 7.780488660901289 1833994.0648211816 0.18462469733656175
/home/xiaowen/c_project/proteomics_cpp/testcases/data/st_no_digestion.msalign 960 1386 1854 14 19 13672.64030223047 13672.64030223047 7718 gi|16767272|ref|NP_462887.1| glutamine synthetase [Salmonella typhimurium LT2] 51980.82279797119 166 289 Y.EGGNKGHRPGVKGGYFPVPPVDSAQDIRSEMCLVMEQMGLVVEAHHHEVATAGQNEVATRFNTMTKKADEI(QIYKYVVHNVAHRFGKTATFMPKP)[-11.00]MFGDNGSGMHCHMSLAKNGTNL(FSGDKYA)[-14.94].G 2 5.0 5.0 2.8691464273433787 1908039.8188458753 0.18451300665456746
/home/xiaowen/c_project/proteomics_cpp/testcases/data/st_no_digestion.msalign 1491 2064 2758 33 31 27555.315554078123 27555.035554078124 4018 gi|16765415|ref|NP_461030.1| rhamnosyl transferase [Salmonella typhimurium LT2] 35714.25166912597 1 314 .(MKITLIIPTYNAGSLWPNVLDAIKQQTIYPDKLIVIDSGSKDETVPLASDLKNISIFNIDSKDFNHGGTRNLAVAKTL)[42.01]DADVIIFLTQDAILADSDAIKNLVYYFSDPLIAAVCGRQLPHK(DANPLAVHARNFNYSSKSIVKSKADIEKLGIKTVFMSNSFAAYRRSVFEELSGFPEHTILAEDMFMAAKMIQAGYK)[-8497.26]VAYCAEAVVRHSHNYTPREEFQRYFDTGVFHACSPWIQRDFGGAGGEGFRFVKSEIQFLLKNAPFWIPRALLTTFAKFLGYKLGKHWQSLPLSTCRYFSMYKSYWNNI(QYSSSKEIK)[296.03]. 2 4.0 4.0 313.87081011059036 2216525.670995376 0.18440145102781136
/home/xiaowen/c_project/proteomics_cpp/testcases/data/st_no_digestion.msalign 1489 2061 2754 22 28 26670.07731776563 26670.20231776563 6116 gi|16766468|ref|NP_462083.1| hypothetical protein STM3168 [Salmonella typhimurium LT2] 82656.77386303467 1 723 .MSAISLIQPDRDLFSWPQYWAACFGPAPFLPMSRDEMDQLGWDSCDIILVTGDAYVDHPSFG(MAICGRMLEAQGFRVGIIAQPDWNSKDDFMRLGKPNLFFGVTAGNMDSMINRYTADRKLRHDDAYTPDNVAGKRPDRATLVYTQRCKEAWKDVPVILGGIEASLRRTAHYDYWSDTVRRSVLVDSKADMLMFGNGERPLVEVAHRLAMGETIDQIRDVRNTAIMVKEALPGWSGVDSTRLDTPGKIDPIPHPYGEDLPCADNKPVAPKKQEAKAITVQPPRPKPWEKTYILLPSFEKVKGDKVLYAHASRILHHETNPGCARALMQKHGDRYVWINPPAIPLSTEEMDSVFALPY)[-32937.13]QRVPHPAYGNARIPAYEMIRFSINIMRGCFGGCSFCSITEHEGRIIQSRSEDSIINEIEAIRDTVPGFTGVISDLGGPTANMYMLRCKSPRAEQTCRRLSCVYPD(ICPHMDTDHTPTINLYRRARELKGIKKILIASGVRYDIAVEDPRYIKELASHHVGGYLKIAPEHTEEGPLSKMMKPGMGSYDRFKELFDLYSKQAGKEQYLIPYFISAHPGTRDEDMVNLALWLKRHRFRLDQVQNFYPSPLANSTTMYYTGKNPLGKIGYKSEDVVVPKGDRQRRLHKALLRYHDPANWPLIRQALEAMG)[-23049.44]KKHLIGGRRECLVPAPTIEEMREARRQNRNTRPALTKHTPVEHQRQGLAANKKRGKGAGR. 2 4.0 4.0 139.58012823153922 2759176.2843514374 0.18429003021148035
/home/xiaowen/c_project/proteomics_cpp/testcases/data/st_no_digestion.msalign 200 596 800 11 7 3913.9540077304696 3913.98900773047 5676 gi|16766249|ref|NP_461864.1| putative cytoplasmic protein [Salmonella typhimurium LT2] 59013.74181957763 323 356 W.(RD)[-63.13]WLGLSQ(NN)[128.21]QTEANYESPAQVVKVFNARSLTDV.K 2 4.0 4.0 14.072717388066152 4049898.343752245 0.18417874396135267
/home/xiaowen/c_project/proteomics_cpp/testcases/data/st_no_digestion.msalign 913 1335 1786 14 14 12202.930021757813 12202.930021757813 8916 gi|17233490|ref|NP_490528.1| hydrophilic protein [Salmonella typhimurium LT2] 27742.665640073243 23 130 D.(GAEIPSTNKHLKN)[23.46]NFNSLHNQMRKMPVSHFKEALDVPDYSGMRQSGFFAMSQGFQLNNHGYDVFIHARRESPQ(SQGKFAGDKFHISVLRDMVPQAFQALSGLLFSEDS)[-14.48].P 2 6.0 5.0 7.463452144422737 4659962.814116119 0.18406759203379602
/home/xiaowen/c_project/proteomics_cpp/testcases/data/st_no_digestion.msalign 1425 1969 2631 15 16 16294.836542625 16294.836542625 9034 gi|17233465|ref|NP_490585.1| mating pair stabilization and pilus assembly protein [Salmonella typhimurium LT2] 102745.36131878418 419 576 I.(PP)[56.19]LSWMMVKGLGAGFSSVYSHFASSSISPTASAAAGVVDGNYSYGNMQTENVNGFSWSTNSTTSFGQMTYQTGSGATATQTRDGNMVMDASGAQSRLPVNINATRQIAAAQQEMAREASTQ(AESALHGFSSSIASAWNTLSQFGTNRGSSDSVTSGAD)[-39.84].S 2 5.0 5.0 6.778148684408282 4800635.79151493 0.18395657418576597
/home/xiaowen/c_project/proteomics_cpp/testcases/data/st_no_digestion.msalign 1460 2016 2694 11 16 16510.516175125 16510.516175125 4362 gi|16765586|ref|NP_461201.1| electron transfer protein [Salmonella typhimurium LT2] 25822.835630612793 17 166 R.(DVVRTAGGLAAVGV)[9.84]ALGLQQQTARASGVRLRPPGALNENVFASACVRCGQCVQACPYDTLKLATLASGLSAGTPYFV(ARDIPCE)[1.67]MCEDIPCAKVCPSGALNKDIASIDDSRMGLAVLLDQENCLNFQGLRCDVCYRECPKIDEAITLELD.R 2 5.0 5.0 9.07320119906688 6463346.307047228 0.1838456901748041
/home/xiaowen/c_project/proteomics_cpp/testcases/data/st_no_digestion.msalign 1064 1505 2012 20 19 12991.305030222657 12991.150030222656 888 gi|16763841|ref|NP_459456.1| ATP-binding component [Salmonella typhimurium LT2] 66293.43813534302 113 230 R.(TGDLIARATNDVDRVVFAAGEGVLTLVDS)[40.98]LVMGCAVLIVMSTQISWQLTLLALLPMPIMALMIKRYGDRLHDYFKLAQAAFSSLNDRTQESLTSIRMIKAFGLEDRQSS(LFAADAEDT)[-39.52].G 2 5.0 5.0 10.096851396074657 6474785.5422086045 0.18373493975903615
/home/xiaowen/c_project/proteomics_cpp/testcases/data/st_no_digestion.msalign 1878 2706 3614 11 15 12290.610547933593 12290.705547933592 754 gi|16763772|ref|NP_459387.1| putative exonuclease [Salmonella typhimurium LT2] 34239.647844510495 64 173 Q.IIICARKEEKILPSPVIKQALEAKIQKLEADQGRKLKK(T)[-100.28]EKDSLKDEVLHSLLPRAFSRFSQTMMWIDT(VNGLIMVDCASAKKAEDTLALLRKSLGSLPVVPLALENPIE)[19.20].L 2 6.0 5.0 6.7552306556155 7538276.1130796345 0.18362432269717038
/home/xiaowen/c_project/proteomics_cpp/testcases/data/st_no_digestion.msalign 771 1188 1590 18 15 10278.71210678125 10278.747106781251 7158 gi|16766989|ref|NP_462604.1| phosphoglyceromutase [Salmonella typhimurium LT2] 56333.28439922851 316 405 N.TFGEWMAKNDKT(QLRISETEKYAHVTFFFNGGVEEPFAGEERILINSPKVA)[144.58]TYDLQPEMSSAELTEKLVAAIESGKYDTIICN(YPNGDMV)[-43.77].G 2 5.0 5.0 9.09202610801198 7631060.410640973 0.18351383874849578
/home/xiaowen/c_project/proteomics_cpp/testcases/data/st_no_digestion.msalign 1438 1986 2654 24 26 17447.53344549219 17447.63844549219 7386 gi|16767105|ref|NP_462720.1| putative cytochrome c peroxidase [Salmonella typhimurium LT2] 52273.335596280514 2 355 M.KKITLYATTVITVGLLCYLGLSGYVWYYDKQRSKKSDVQASVVGENNKILGYFR(EKGCDYCHTPSAELPFYSSFPVAKQLMDYDIQLGYKSFNLEAVRAALIADTPVPQSELNKIEWVMQHQTMPPTRYVALHWAGGVSDKERTDILNWIADQRERNYASADTDPAHRNEPVQPIPRNIPVDAKKVDLGFRLYHDERLSGDSTISCAHCHALNAGGVDGRKTSIGVGGAVGPINAPTVFNSVFNIEQFW)[-21693.50]DGRAATLQEQAGGPPLNPIEMASKSWDEIISKLDKDPVLKKDFQAVYPQGFTGENITDA(IAEFEK)[-715.74]TLITPDSAFDKWLRGDENALTAQQKHGYQLFKENKCATCH.G 2 6.0 6.0 2.344707944806548 7686807.615226213 0.18340348767288034
/home/xiaowen/c_project/proteomics_cpp/testcases/data/st_no_digestion.msalign 1744 2412 3222 12 17 13493.20421963672 13493.25421963672 8574 gi|16767704|ref|NP_463319.1| aspartate carbamoyltransferase regulatory subunit [Salmonella typhimurium LT2] 17360.948869901124 2 136 M.(THDNKLQVEAIKCGTVIDHIPAQVGFKLLSLFKLTETDQRITIGLNLPSGEMGR)[42.01](KDLIKIENTFLTEE)[-1673.05]QVNQLALYAPQATVNRIDNYDVVGKSRPSLPERINNVLVCPNSNCISHAEPVSSSFAVKK(RANDIAL)[50.40].K 2 4.0 4.0 34.320046622766014 8529305.925929492 0.18389423076923078
/home/xiaowen/c_project/proteomics_cpp/testcases/data/st_no_digestion.msalign 1280 1772 2368 12 20 14044.571969109375 14044.571969109375 4156 gi|16765483|ref|NP_461098.1| putative ATP-binding protein [Salmonella typhimurium LT2] 40075.52043362182 2 182 M.NEQSQAK(SPDTLRAMVAGTLANFQHPTLKHNLTTLKALHHVAWMDDTLHVELVMPFVWNSAFEVLKEQCSADLLRITGAKAI)[-8326.94](DWKLSYNIATLKRVKNQPGINGVKNIIAVSSGKGGVGKSSTAVNLALALAAEGAKVGVLDADIYGPSIPTM)[3108.55]LGAEDQRPTSPDGTHMAPIMSHGLATNS.I 2 4.0 4.0 14.527384658159951 1.2181995957132969E7 0.1843843843843844
/home/xiaowen/c_project/proteomics_cpp/testcases/data/st_no_digestion.msalign 969 1395 1866 15 9 6851.70670166797 6851.70670166797 1854 gi|16764323|ref|NP_459938.1| hypothetical protein STM0962 [Salmonella typhimurium LT2] 49713.21085567993 127 188 F.(LPHIEDGTIT)[9.81]FIGATTENPSFELNSALLSRARVYLLKSLTTDDIEQVLDQ(AMQDKTRGYGDQ)[-52.57].D 2 4.0 4.0 34.56153781272103 1.6249242486522913E7 0.18487394957983194
/home/xiaowen/c_project/proteomics_cpp/testcases/data/st_no_digestion.msalign 1343 1859 2484 10 13 14917.153129023436 14917.153129023436 4738 gi|16765774|ref|NP_461389.1| putative ethanolamine operon regulator [Salmonella typhimurium LT2] 40143.660192685544 13 144 L.(YHEALPEDVKLTPRVEVDN)[-71.63]VHQRRTTDVYEHALTITAWQQIYDQLHPGKFHGEFTEILLDEIQVFREYTGLALRQSCLVWPNSFWFGIPATRGEQGFIGAQGLGSAEIATRP(GGTEFELSTPDDYTILGVVI)[8.25].S 2 5.0 4.0 20.54508688262615 2.0436552463785816E7 0.1853629274145171
/home/xiaowen/c_project/proteomics_cpp/testcases/data/st_no_digestion.msalign 288 688 923 28 5 3196.4945351601564 3196.4945351601564 258 gi|16763522|ref|NP_459137.1| ATP-binding cell division protein [Salmonella typhimurium LT2] 45798.62402554077 112 138 N.(VVHTAKSVR)[-.02]VRDEHRV(LHVIPQEYAID)[30.80].Y 2 4.0 4.0 101.74845263489938 2.4824286957343828E7 0.18645083932853718
/home/xiaowen/c_project/proteomics_cpp/testcases/data/st_no_digestion.msalign 1957 3089 4124 15 8 9113.788363 9113.753363 5348 gi|16766083|ref|NP_461698.1| phase 2 flagellin [Salmonella typhimurium LT2] 52504.44756908935 152 240 N.(DGETIDIDLKQ)[-.01]INSQTLGLDSLNVQKAYDVKDTAVTTKAYANNGTTLDVSGLDDAAIKAATGGTNGTASVTGGAVKFDA(DNNKYFVTIG)[-10.79].G 2 4.0 4.0 62.61179529769666 3.3128145174139436E7 0.18753744757339724
/home/xiaowen/c_project/proteomics_cpp/testcases/data/st_no_digestion.msalign 1510 2099 2804 13 15 16294.84333034375 16294.98833034375 3122 gi|16764958|ref|NP_460573.1| putative PTS system enzyme IIC component [Salmonella typhimurium LT2] 46949.63995571655 212 363 Q.(KRYGMVGDPVI)[-.04]IGVVLGLIFGLAAGEGFKGCATLMITVAAIMVLFPRMIRLIVEGLMPISDGARKFFQKHFKGREVFIGLDTAVTLGHPTTIAVGLLLIPIMLILASILPGNKVLPLADLPVAPFFICMATVIHRGDLIR(TLLSGIIVMITV)[-43.15].L 2 4.0 4.0 48.726185167403656 3.781485855306281E7 0.18742514970059881
/home/xiaowen/c_project/proteomics_cpp/testcases/data/st_no_digestion.msalign 1695 2336 3120 16 15 11252.875199230468 11252.875199230468 72 gi|16763426|ref|NP_459041.1| putative arylsulfatase regulator [Salmonella typhimurium LT2] 46216.26008434814 61 158 D.IDEVIFAWQGGEPTLM(GIPFYRKAVEFQ)[28.65]QRYCGGKTIVNTFQTNGILINDDWATFFREHDFLVGVSIDGDAALHDEWRVTRSGKPTHEK(VENAVRCLA)[-28.35].Q 2 4.0 4.0 67.30471635200594 4.058135938792948E7 0.18731298623578696
/home/xiaowen/c_project/proteomics_cpp/testcases/data/st_no_digestion.msalign 1916 2804 3744 11 29 28098.777905878906 28098.777905878906 514 gi|16763650|ref|NP_459265.1| putative cytoplasmic protein [Salmonella typhimurium LT2] 70891.3523580603 2 203 M.(DPRLLEYYNRELSYLRETGAEFATLHPKIAARLGMQGTDIADPYVERMIEAFSFLSARTQL)[42.01](KIDAEFPRFTQRLLEVVSPNYVTPTPSMAVVKLYPDTQEGDLAKGVTVPRDTAFVSPIPEGENTACQFRSSQDVTLWPLSIEEVRLTA)[3921.65]APP(DMPALHRYLPPNIHVAGALRIT)[1378.43]LRTFGELTFSELAGPARLPFYLCGEERI.A 2 4.0 4.0 37.439033339791536 4.0844826552307956E7 0.18720095693779903
/home/xiaowen/c_project/proteomics_cpp/testcases/data/st_no_digestion.msalign 638 1047 1402 12 5 3656.9918511250003 3656.981851125 8946 gi|17233426|ref|NP_490543.1| plasmid partition protein B [Salmonella typhimurium LT2] 36914.416902738034 147 178 N.(LREIGLRLMAL)[38.98]KESGFNQ(KEIAELEGLSQAKV)[48.04].T 2 5.0 4.0 135.76136985214268 4.589714323426953E7 0.18708906156604901
/home/xiaowen/c_project/proteomics_cpp/testcases/data/st_no_digestion.msalign 1978 3133 4183 17 37 26821.026666714846 26820.981666714848 7404 gi|16767114|ref|NP_462729.1| 2-oxo-3-deoxygalactonate kinase [Salmonella typhimurium LT2] 31527.772779660645 2 270 M.(TARYIAIDWGSTNLRAWLYQGDKCLESRQSEAGVTRLNGKSPDAVLAEVTTHWRDSATPVVMAGMIGSNVGWQNAPYLPVPALFSAIGEQLTAVGD)[42.01](NIWIIPGLCVSREDNHNVMRGEETQLLGACELSPSSVYVMPGTHCKWVQTDTQQIHDFRTVMTG)[-2360.71]ELHHLLLRHSLVGAGLPEQEVSGDAYAAGLERGLNSPAVLPSLFEVRASHVLGHLAREQVSDFLSGLLIGAEVASMSESFAAQQAITLVAGPALISRYQ(QAFSAIGRDV)[-44.98].S 2 4.0 4.0 100.80158352852129 4.93077949046422E7 0.1869772998805257
/home/xiaowen/c_project/proteomics_cpp/testcases/data/st_no_digestion.msalign 287 687 922 33 5 3196.4945351601564 3196.4945351601564 8634 gi|16767735|ref|NP_463350.1| putative ATP-dependent Lon protease [Salmonella typhimurium LT2] 77755.56052990479 2 95 M.QTHHDL(PVPAVSEGELVAEGYDLDALLNQHFRGRVVRKDLTKQLKEGANVPVYVLEYLLGMYCASDDDQIVEQG)[-7417.78]LQNVKRILADNYVRP(DEAEK)[-58.14].V 2 4.0 4.0 205.70840987728923 4.979440104964605E7 0.18686567164179105
/home/xiaowen/c_project/proteomics_cpp/testcases/data/st_no_digestion.msalign 1594 2208 2950 14 13 11545.274378820312 11545.274378820312 840 gi|39546296|ref|NP_459431.2| putative transport protein [Salmonella typhimurium LT2] 48739.14178295654 307 415 V.(IGVQL)[-10.16]FFLAFNLMEALLPSLISKESPAGYK(GTAMGVYSTSQFLGVALGGSLGGWIDGTFDGQTVFLAGAVLAMVWLAVASTMKEPPYVSSLRVEIPADIVADDRLKQRL)[8.38].L 2 5.0 4.0 105.67592322613876 6.434112096910898E7 0.1873508353221957
/home/xiaowen/c_project/proteomics_cpp/testcases/data/st_no_digestion.msalign 1584 2190 2926 23 15 13647.881758539063 13647.981758539063 2922 gi|16764857|ref|NP_460472.1| dipeptidyl carboxypeptidase II [Salmonella typhimurium LT2] 77440.5658094458 165 284 S.ATLMSQFNQRLLAASKAGGLAVDDAHCLAGLSPEEMTVAAEAA(REKGLEERWFIPLLNTTQQPALATLRDRQTRENLFAASWTRAEK)[210.12]GDAHDTRAIVQR(LVEIRRCQAKLLGFPNYAAWK)[-3.08].M 2 4.0 4.0 67.91506457815535 1.5159841059422067E8 0.18783542039355994
/home/xiaowen/c_project/proteomics_cpp/testcases/data/st_no_digestion.msalign 1757 2442 3262 19 14 16292.855489156253 16292.855489156253 936 gi|16763864|ref|NP_459479.1| DNA polymerase III tau/gamma subunits [Salmonella typhimurium LT2] 70894.17014141602 2 544 M.(SYQVLARKWRPQTFADVVGQEHVLTALANGLSLGRIHHAYLFSGTRGVGKTSIARLLAKGLNCETGITATPCGVCDNCREIEQGRFVDLIEIDAASRT)[42.01](KVEDTRDLLDNVQYAPARGRFKVYLIDEVHMLSRHSFNALLKTLEEPPAHVKFLLATTDPQKLPVTILSRCLQFHLKALDVEQIRHQLEHILNEEHIAHEPRALQLLSRAADGSLRDALSLTDQAIA)[-14517.21]SGDGQVSTQAVSAMLGTLDDDQ(ALSLVEAVVDANGERVMSLINEAAARGIEWEALLVEMLSLLHRIAMVQLSPAALGSDMAAIEQRMRELARTVPPGDLQLYYQTLLIGRKELPWAPDRRMGVEMTLLRALAFHPRMPLPEPETPRQSFAPVAPTAVMTPPQLQQPSAPAPQTSPAPLPASTSQVLAARNQLQRAQGVTKTKKSEPAAASRARPVNNSALERLASVSERVQARPAPSALETAPVKKEAYRWKATTPVVQTKEVVATPKALKKALEHEKTPELAAKLAAEAIERDPWAAQVSQLSLPKLV)[-28889.43]EQVALNAWK.E 2 4.0 4.0 62.47598439385673 2.3735436432689428E8 0.18772348033373062
/home/xiaowen/c_project/proteomics_cpp/testcases/data/st_no_digestion.msalign 1379 1911 2554 10 32 25375.837366124997 25375.694963651124 288 gi|16763537|ref|NP_459152.1| putative beta lactamase regulator [Salmonella typhimurium LT2] 32274.43305416626 52 276 M.VVTFLLLQALKGLLFNVPTLVVWILLGVLCIGAGKVRVHYHAWLKAASRNDPHPCEAMASELTLIHGVPPDCNEREFLRELQNALLWINFRFYLAPLFWFIVGGPWGPVTLVGYAFLRAWQTWLARYQTPHQRLQSGIDAILHVLDWIPVRLAGVVYALLGHGEKALPAWFASLADLHTSQYQVLTRLAQFSLAREPHTDKVETPKAAVSMAKKASFVVVVIIAL.L 0 3.0 3.0 4.648525754470025E-4 8.575016491275616E15 0.18820726622989875
/home/xiaowen/c_project/proteomics_cpp/testcases/data/st_no_digestion.msalign 1920 2809 3751 12 36 31814.105872593755 31814.557981687016 1850 gi|16764321|ref|NP_459936.1| cell division protein [Salmonella typhimurium LT2] 148381.19957180542 548 832 A.GAAAAAPAFSLATGGAPRPQVKEGIGPQLPRPNRVRVPTRRELASYGIKLPSQRIAEEKAREAERNQYETGAQLTDEEIDAMHQDELARQFAQSQQHRYGETYQHDTQQAEDDDTAAEAELARQFAASQQQRYSGEQPAGAQPFSLDDLDFSPMKVLVDEGPHEPLFTPGVMPESTPVQQPVAPQPQPQYQQPQQPVAPQPQYQQPQQPVAPQPQYQQPQQPVAPQPQYQQPQQPVAPQPQYQQPQQPVAPQPQYQQPQQPVAPQPQYQQPQQPVAPQPQYQQPQ.Q 0 3.0 3.0 4.7819742054926097E-4 8.821185433580274E15 0.1880952380952381
/home/xiaowen/c_project/proteomics_cpp/testcases/data/st_no_digestion.msalign 1756 2439 3258 10 31 22072.059812027343 22071.976495938718 1102 gi|16763949|ref|NP_459564.1| putative phosphosugar isomerases [Salmonella typhimurium LT2] 37046.463873105466 10 208 R.RIISDILGKQNIERVWFVGCGGSLTGFWPGKYFLDCEASKLAVGYITSNEFVHATPKALGKNSVVILASQQGNTAETVAAARVAREKGAATIGLVYQPDTPLCEYSDYIIEYQWARYPETVDPAQQKAAYSLWLALEILAQTEGYAQYDELVSAFGRFSDVVHGAQRQVQEDAQRFAAEWKDEKVVYMMGSGPSFGAAH.Q 0 2.0 2.0 0.0020112768911843375 3.7101510073043648E16 0.18798334324806662
/home/xiaowen/c_project/proteomics_cpp/testcases/data/st_no_digestion.msalign 979 1407 1882 11 28 16008.65859559375 16008.465803342291 4832 gi|16765821|ref|NP_461436.1| polyphosphate kinase [Salmonella typhimurium LT2] 80520.19114513916 324 462 W.FDKEKFRNGFDAIRERDVLLYYPYHTFEHVLELLRQASFDPSVLAIKINIYRVAKDSRIIDSMIHAAHNGKKVTVVVELQARFDEEANIHWAKRLTEAGVHVIFSAPGLKIHAKLFLISRKEGDDVVRYAHIGTGNFNE.K 0 4.0 2.0 0.0028329963637323476 5.2259558883520392E16 0.187871581450654
/home/xiaowen/c_project/proteomics_cpp/testcases/data/st_no_digestion.msalign 2015 3177 4242 10 36 23030.777624593753 23030.676229672852 108 gi|16763444|ref|NP_459059.1| putative oxalacetate decarboxylase subunit beta [Salmonella typhimurium LT2] 45028.65541286987 201 419 G.GADGPTAIYLSGKLAPELLGAIAVAAYSYMALVPLIQPPIMKALTSETERKIRMVQLRTVSKREKILFPVVLLMLVALLLPDAAPLLGMFCFGNLMRESGVVERLSDTVQNGLINIVTIFLGLSVGAKLVADKFLQPQTLGILLLGVIAFGIGTAAGVLMAKLLNLCSKNKINPLIGSAGVSAVPMAARVSNKVGLESDPQNFLLMHAMGPNVAGVIGS.A 0 2.0 2.0 0.003047885630069899 5.6223566183836416E16 0.18835412953060013
/home/xiaowen/c_project/proteomics_cpp/testcases/data/st_no_digestion.msalign 284 684 918 16 5 3455.577684554688 3455.5372411779754 1224 gi|16764010|ref|NP_459625.1| lipoate synthase [Salmonella typhimurium LT2] 36474.511991696774 281 311 S.PEEFDEMKAEALAMGFTHAACGPFVRSSYHA.D 0 2.0 2.0 0.00355162556749464 6.5515927889217072E16 0.18883610451306412
/home/xiaowen/c_project/proteomics_cpp/testcases/data/st_no_digestion.msalign 1972 3116 4160 11 17 11758.529946824221 11758.528040128173 7252 gi|16767036|ref|NP_462651.1| putative cytoplasmic protein [Salmonella typhimurium LT2] 13354.25049419922 15 114 A.LRMGYKECPDENAYGDAYYIKDGLKWIFNITGLKKRLGVYSDDDLRKQNYDVDTYYRVENQPEESADDEMQSLYHNLAVEEGEPVYLEGGMYLYPDGSIR. 0 1.0 1.0 0.013475496058058808 2.48579027049292736E17 0.19228486646884274
/home/xiaowen/c_project/proteomics_cpp/testcases/data/st_no_digestion.msalign 1946 2928 3910 10 5 3205.396817875 3205.3759138159153 1324 gi|16764060|ref|NP_459675.1| citrate utilization protein b [Salmonella typhimurium LT2] 42148.79128475708 13 38 T.VLTEPEAEVERVMQVCNACRYCEGFC.A 0 1.0 1.0 0.013711734203809677 2.5293685166440672E17 0.19217081850533807
/home/xiaowen/c_project/proteomics_cpp/testcases/data/st_no_digestion.msalign 1760 2450 3272 11 35 29443.348211097662 29443.464388089604 1580 gi|16764189|ref|NP_459804.1| putative transport protein [Salmonella typhimurium LT2] 81846.62930508179 1 263 .(M)[42.01]RWTLFILFCLLGAPAHAVAIPGVTTGTSTSQQAAPEPSPEQKKAAYAALADVLENEASRNELIAQLREASTTPPTEPAPALAPPAAKDEKTVLENVTTVTRQYGDAFATRFAQLYRNITDAPHKPFNSQTFTNALTHFLFLAVAVFGFYSVIRLCALPLYRKMGLWARKKNRERSNWLQLPAMIVGAFIIDLLLLALTLFIGQMLSDNFHAGSRTIAFQQSLFLNAFALIEFFKAILRLIFCPNVPELRPFAIQDATARYWN.R 0 1.0 1.0 0.07039593356062598 1.2985757702227287E18 0.19264967397747482
/home/xiaowen/c_project/proteomics_cpp/testcases/data/st_no_digestion.msalign 1758 2445 3266 12 25 22073.044202890625 22073.17876644653 3394 gi|16765098|ref|NP_460713.1| putative phosphoesterase [Salmonella typhimurium LT2] 33414.06857128662 1 200 .(M)[42.01]RKMKIGLALGSGAARGWSHIGVIKALKQAGIDIDIVAGCSIGSLVGAAYACNKLSALEQWVCSFRYWDVLRLMDVSWGRGGLLRGERVFNHYRDIMPVTDFDHCSRRFGAVATNLSTGRELWFTEGDLHLAVRASCSMPGLMSPVEHNGYWLVDGAVVNPVPVSLTRALGADIVIAVDLQHDAHLMQQDLLSVNVGNIN.E 0 1.0 1.0 0.07144221938983716 1.31787633714213632E18 0.19253554502369669
/home/xiaowen/c_project/proteomics_cpp/testcases/data/st_no_digestion.msalign 1766 2463 3290 12 11 11567.908548726564 11568.020742612302 70 gi|16763425|ref|NP_459040.1| putative arylsulfatase [Salmonella typhimurium LT2] 56229.4892141394 401 497 T.LKRQKPLIFGIDMPFQDDPTDEWAIRDGDWKMIIDRQNKPKYLYNLKTDRFETLNQIGKQPQIEKQLYGKFLKYKKDIDNDSLMKARGDKPTPVTWG. 0 1.0 1.0 0.08055209324638413 1.48592384871763558E18 0.19242155121373594
/home/xiaowen/c_project/proteomics_cpp/testcases/data/st_no_digestion.msalign 1764 2458 3283 13 27 23820.455142617186 23820.203844266358 2336 gi|16764563|ref|NP_460178.1| putative cytoplasmic protein [Salmonella typhimurium LT2] 32091.539690213624 1 208 .MRSNNNNPLTRDEILSRYFPQYRPAVATSQGLSGGSCIIAHDTHRVVLRRHHDPDAPPAHFLRHYRALSQLPASLAPRALFYTPGWMAVEYLHGVVNSALPDADELAALLYHLHQQPRFGWRIALSPLLAQYWSCCDPARRTPFWLRRLKQLQKNGEPRPLRLAPLHMDVHGDNIVLTSAGLRLIDWEYAGDGDIALELAAVWVEDER.Q 0 1.0 1.0 0.08244293649946476 1.52080375029071437E18 0.19230769230769232
/home/xiaowen/c_project/proteomics_cpp/testcases/data/st_no_digestion.msalign 1765 2460 3286 14 28 25760.785075296873 25761.020750241696 734 gi|16763762|ref|NP_459377.1| putative permease [Salmonella typhimurium LT2] 43663.71051998657 1 237 .(M)[42.01]ESWKVNLISVWFGCFFTGLAISQILPFLPLYISQLGVSSHEALSMWSGLTFSITFLISAIVSPMWGSLADRKGRKLMLLRASLGMAIAILLQAFATHVWQLFLLRGIMGLTSGYIPNAMALVASQVPRERSGWALSTLSTAQISGVIGGPLMGGFVADHIGLRAVFLITAMLLVVSFLVTLFLIKEGVRPVIKKSERLSGKAVFASLPYPALVISLFFTTMVIQLCNGSISPILAL.F 0 1.0 1.0 0.08533002770917406 1.57406118295367834E18 0.192193968066233
/home/xiaowen/c_project/proteomics_cpp/testcases/data/st_no_digestion.msalign 1755 2436 3254 26 50 30654.958225890627 30654.841844754636 3034 gi|16764913|ref|NP_460528.1| formate dehydrogenase-N beta subunit [Salmonella typhimurium LT2] 33261.956773953854 1 272 .MSMETQDIIKRSATNAITPPPQARDYKAEVAKLIDVSSCVGCKACQVACSEWNDIRDNVGHCVGVYDNPADLSAKSWTVMRFTETEQNGKLEWLIRKDGCMHCEDPGCLKACPSAGAIIQYANGIVDFQSEHCIGCGYCIAGCPFNIPRLNKEDNRVYKCTLCVDRVSVGQEPACVKTCPTGAIHFGTKKEMLELGEQRVEKLKARGFEHAGIYNPQGVGGTHVMYVLHHANQPELYHGLPKDPQIDTSINLWKGALKPLAAAGFIATFAGL.I 0 1.0 1.0 0.1593138076744184 2.9388210375781811E18 0.19267139479905437
|
