1
2
3
4
5
6
7
8
9
10
11
12
13
14
15
16
17
18
19
20
21
22
23
24
25
26
27
28
29
30
31
|
#! /bin/sh
### Set verbose mode
test "x$VERBOSE" = "xx" && set -x
### Set environnement
TOPPREDDATA=$srcdir/../data; export TOPPREDDATA
TOPPREDOPT=' -g none -t none'
### detect segment at the beginning of the sequence
base='first_seg'
../src/toppred $TOPPREDOPT $srcdir/${base}.fasta >${base}_tmp.out 2>${base}_tmp.err || exit 1
diff ${base}_tmp.out $srcdir/${base}.out >/dev/null || exit 1
diff ${base}_tmp.err $srcdir/${base}.err >/dev/null || exit 1
### detect segment at the end of the sequence
base='last_seg'
../src/toppred $TOPPREDOPT $srcdir/${base}.fasta >${base}_tmp.out 2>${base}_tmp.err || exit 1
diff ${base}_tmp.out $srcdir/${base}.out >/dev/null || exit 1
diff ${base}_tmp.err $srcdir/${base}.err >/dev/null || exit 1
### no segment found
base='no_seg'
../src/toppred $TOPPREDOPT $srcdir/${base}.fasta >${base}_tmp.out 2>${base}_tmp.err || exit 1
diff ${base}_tmp.out $srcdir/${base}.out >/dev/null || exit 1
diff ${base}_tmp.err $srcdir/${base}.err >/dev/null || exit 1
exit 0
|
